Pregenerated sensors for IFT43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007867Ensembl transcript IDs: ENSMUST00000054565.8, ENSMUST00000222821.2, ENSMUST00000222905.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | ATAAAAACTGTAAGCTGCTTGCAAGCTCTCTTGGTTTaGGACTTCTTGCATTTGTTCAAATGCTCAGTGATG | + |
|
Preference number: 3 (lower is better) Translates to: IKTVSCLQALLV*DFLHLFKCSVM Trigger: CATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTTTTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR GCA 90 bp | GCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGCGGAGGTGGCCGAGCTaGGACGTCTCTCCTCGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: AACKLSWFETSCICSNAQRRWPS*DVSPRP Trigger: TGGGCGAGGAGAGACGTCGCAGCTCGGCCACCTCCG...CTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR GCA 90 bp | AACTGTAAGCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAACGGAGGTGGCCGAGCTaGGACGTCTCTCCTCGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: NCKLLASSLGLRLLAFVQRRWPS*DVSPRP Trigger: TGGGCGAGGAGAGACGTCGCAGCTCGGCCACCTCCG...TTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR GCA 90 bp | GCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGAGGATCCTCCTTCTCTaGCCGCAGCAGGTCCCACTC | + |
|
Preference number: 4 (lower is better) Translates to: AACKLSWFETSCICSNAQRILLL*PQQVPL Trigger: GAGTGGGACCTGCTGCGGGCAGAGAAGGAGGATCCT...CTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR TCA 90 bp | GCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGCTCAGTGAGGAGCTCTaGGGACACCTCGGTGTACAG | + |
|
Preference number: 4 (lower is better) Translates to: AACKLSWFETSCICSNAQLSEEL*GHLGVQ Trigger: CTGTACACCGAGGTGTCCTCAGAGCTCCTCACTGAG...CTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR TCA 90 bp | AGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGTGATGCTCCTCTCAGTGAGGAGCTCTaGGGACACCTCGGTGTACAG | + |
|
Preference number: 4 (lower is better) Translates to: SSLGLRLLAFVQMLSDAPLSEEL*GHLGVQ Trigger: CTGTACACCGAGGTGTCCTCAGAGCTCCTCACTGAG...AGGAGCATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR CCA 90 bp | AGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGTGATGCTCCTTCGCACTTCATGCTCTaGGGCCAGCACTTTGGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: SSLGLRLLAFVQMLSDAPSHFML*GQHFGE Trigger: CTCACCAAAGTGCTGGCCCCAGAGCATGAAGTGCGA...AGGAGCATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR TCA 90 bp | GCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGGGAGCCTCTCCAGTCTaGGTCAGTGAAGAATTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: AACKLSWFETSCICSNAQGASPV*VSEEFL Trigger: CAAGAATTCTTCACTGACTCAGACTGGAGAGGCTCC...CTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR TCA 90 bp | AGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGTGATGCTCCTAATATCGTCGTCGTCTaGCCCCATCAGGTTCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SSLGLRLLAFVQMLSDAPNIVVV*PHQVLL Trigger: CAGCAGAACCTGATGGGGTCAGACGACGACGATATT...AGGAGCATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR CCA 90 bp | AACTGTAAGCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAATCGCACTTCATGCTCTaGGGCCAGCACTTTGGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: NCKLLASSLGLRLLAFVQSHFML*GQHFGE Trigger: CTCACCAAAGTGCTGGCCCCAGAGCATGAAGTGCGA...TTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR TCA 90 bp | AACTGTAAGCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAAGGCCGAGTACTTCATaGGGTCATTGTCCAGGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: NCKLLASSLGLRLLAFVQRPSTS*GHCPGH Trigger: GTGACCTGGACAATGACCTCATGAAGTACTCGGCCT...TTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR TCA 90 bp | AGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGTGATGCTCCTGGGCCAGCACTTTGGTaGGGAGTTTCAGGTCAATTT | + |
|
Preference number: 4 (lower is better) Translates to: SSLGLRLLAFVQMLSDAPGPALW*GVSGQF Trigger: AAATTGACCTGAAACTCCTCACCAAAGTGCTGGCCC...AGGAGCATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR GCA 90 bp | AGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGTGATGCTCCTACAAAGTCTTCCTCCTaGACATCTTCCAGGTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SSLGLRLLAFVQMLSDAPTKSSS*TSSRSG Trigger: CCCAGACCTGGAAGATGTGCAGGAGGAAGACTTTGT...AGGAGCATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR CCA 90 bp | GCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGCACATCTTCCAGGTCTaGGATCACAGGAATATCGTC | + |
|
Preference number: 4 (lower is better) Translates to: AACKLSWFETSCICSNAQHIFQV*DHRNIV Trigger: GACGATATTCCTGTGATCCCAGACCTGGAAGATGTG...CTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR TCA 90 bp | AACTGTAAGCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAGGAGCCTCTCCAGTCTaGGTCAGTGAAGAATTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: NCKLLASSLGLRLLAFVQGASPV*VSEEFL Trigger: CAAGAATTCTTCACTGACTCAGACTGGAGAGGCTCC...TTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR GCA 90 bp | AACTGTAAGCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAACAAAGTCTTCCTCCTaGACATCTTCCAGGTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: NCKLLASSLGLRLLAFVQTKSSS*TSSRSG Trigger: CCCAGACCTGGAAGATGTGCAGGAGGAAGACTTTGT...TTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR CCA 90 bp | AACTGTAAGCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAACACATCTTCCAGGTCTaGGATCACAGGAATATCGTC | + |
|
Preference number: 4 (lower is better) Translates to: NCKLLASSLGLRLLAFVQHIFQV*DHRNIV Trigger: GACGATATTCCTGTGATCCCAGACCTGGAAGATGTG...TTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| 3UTR CAA 72 bp | TATAAAAACTGTAAGCTGCTTGCAAGCTCTCTTGGTTaGAGACTTCTTGCATTTGTTCAAATGCTCAGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: YKNCKLLASSLG*RLLAFVQMLSD Trigger: ATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTTTTTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS CCA 90 bp | AATTCTCAGCCTGAGTCGACTCCTGATGAGCCCGGCGTCCCATCTTaGCCCCGGAGGTGGCCGAGCTGCGACGTCTCTCCTCGCCCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: NSQPESTPDEPGVPS*PRRWPSCDVSPRPG Trigger: ACCTGGGCGAGGAGAGACGTCGCAGCTCGGCCACCTCCGGGGCCAAGATGGGACGCCGGGCTCATCAGGAGTCGACTCAGGCTGAGAATT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS CCA 90 bp | AGGTCCCACTCAGTGAGGAGCTCTGAGGACACCTCGGTGTACAGATaGTCCCAGTCCCAGCCCACATCATCCTCTCGCACTTCATGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: RSHSVRSSEDTSVYR*SQSQPTSSSRTSCS Trigger: AGAGCATGAAGTGCGAGAGGATGATGTGGGCTGGGACTGGGACCATCTGTACACCGAGGTGTCCTCAGAGCTCCTCACTGAGTGGGACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS-3UTR CAA 90 bp | AGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGTGATGCTCCTGCCCGGCGTCCCATCTaGGCCCCGGAGGTGGCCGAG | + |
|
Preference number: 5 (lower is better) Translates to: SSLGLRLLAFVQMLSDAPARRPI*APEVAE Trigger: CTCGGCCACCTCCGGGGCCAAGATGGGACGCCGGGC...AGGAGCATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS TCA 90 bp | CTGCACATCTTCCAGGTCTGGGATCACAGGAATATCGTCGTCGTCTaGCCCCATCAGGTTCTGCTGTCGGAGGCGGTGATTCGCCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: LHIFQVWDHRNIVVV*PHQVLLSEAVIRHL Trigger: AAGATGGCGAATCACCGCCTCCGACAGCAGAACCTGATGGGGTCAGACGACGACGATATTCCTGTGATCCCAGACCTGGAAGATGTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054565.8 |
||
| CDS TCA 90 bp | CTGCACATCTTCCAGGTCTGGGATCACAGGAATATCGTCGTCGTCTaGCCCCATCAGGTTCTGCTGTCGGAGGCGGTGATCTTCCATCTC | + |
|
Preference number: 5 (lower is better) Translates to: LHIFQVWDHRNIVVV*PHQVLLSEAVIFHL Trigger: GAGATGGAAGATCACCGCCTCCGACAGCAGAACCTGATGGGGTCAGACGACGACGATATTCCTGTGATCCCAGACCTGGAAGATGTGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS-3UTR CAA 90 bp | AACTGTAAGCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAGCCCGGCGTCCCATCTaGGCCCCGGAGGTGGCCGAG | + |
|
Preference number: 5 (lower is better) Translates to: NCKLLASSLGLRLLAFVQARRPI*APEVAE Trigger: CTCGGCCACCTCCGGGGCCAAGATGGGACGCCGGGC...TTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGCTTACAGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS TCA 90 bp | CCACATCATCCTCTCGCACTTCATGCTCTGGGGCCAGCACTTTGGTaGGGAGTTTCAGGTCAATTTCTCCATCCAAAGTCTGAAAGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: PHHPLALHALGPALW*GVSGQFLHPKSERP Trigger: CGGCCTTTCAGACTTTGGATGGAGAAATTGACCTGAAACTCCTCACCAAAGTGCTGGCCCCAGAGCATGAAGTGCGAGAGGATGATGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS GCA 90 bp | TGGATACTTGGAGGAGACGCCACCTGTAGCACAAAGTCTTCCTCCTaGACATCTTCCAGGTCTGGGATCACAGGAATATCGTCGTCGTCT | + |
|
Preference number: 5 (lower is better) Translates to: WILGGDATCSTKSSS*TSSRSGITGISSSS Trigger: AGACGACGACGATATTCCTGTGATCCCAGACCTGGAAGATGTGCAGGAGGAAGACTTTGTGCTACAGGTGGCGTCTCCTCCAAGTATCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS GCA 90 bp | GTTTCGGTGGGGGAGCCTCTCCAGTCTGAGTCAGTGAAGAATTCTTaGTGTTTAAGTAATTCTCAGCCTGAGTCGACTCCTGATGAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: VSVGEPLQSESVKNS*CLSNSQPESTPDEP Trigger: GGGCTCATCAGGAGTCGACTCAGGCTGAGAATTACTTAAACAGCAAGAATTCTTCACTGACTCAGACTGGAGAGGCTCCCCCACCGAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS-3UTR CAA 90 bp | GCTGCTTGCAAGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGTCTGGGGCCAGCACTTaGGTGAGGAGTTTCAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: AACKLSWFETSCICSNAQSGAST*VRSFRS Trigger: TGACCTGAAACTCCTCACCAAAGTGCTGGCCCCAGA...CTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCTTGCAAGCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS TCA 90 bp | TCAGGTCAATTTCTCCATCCAAAGTCTGAAAGGCCGAGTACTTCATaGGGTCATTGTCCAGGTCACGGTAGGTCATCACTCGGTTTACCT | + |
|
Preference number: 5 (lower is better) Translates to: SGQFLHPKSERPSTS*GHCPGHGRSSLGLP Trigger: AGGTAAACCGAGTGATGACCTACCGTGACCTGGACAATGACCTCATGAAGTACTCGGCCTTTCAGACTTTGGATGGAGAAATTGACCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS-3UTR CAA 90 bp | AGCTCTCTTGGTTTGAGACTTCTTGCATTTGTTCAAATGCTCAGTGATGCTCCTTCTGGGGCCAGCACTTaGGTGAGGAGTTTCAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SSLGLRLLAFVQMLSDAPSGAST*VRSFRS Trigger: TGACCTGAAACTCCTCACCAAAGTGCTGGCCCCAGA...AGGAGCATCACTGAGCATTTGAACAAATGCAAGAAGTCTCAAACCAAGAGAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS CCA 72 bp | CATGGAGTCATCCGCCCAGCCTCCCTGCCTTCGAGGTaGTTTCGGTGGGGGAGCCTCTCCAGTCTGAGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: HGVIRPASLPSR*FRWGSLSSLSQ Trigger: CTGACTCAGACTGGAGAGGCTCCCCCACCGAAACCACCTCGAAGGCAGGGAGGCTGGGCGGATGACTCCATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS TCA 72 bp | CTCTGCCCGCAGCAGGTCCCACTCAGTGAGGAGCTCTaGGGACACCTCGGTGTACAGATGGTCCCAGTCCCA | + |
|
Preference number: 6 (lower is better) Translates to: LCPQQVPLSEEL*GHLGVQMVPVP Trigger: TGGGACTGGGACCATCTGTACACCGAGGTGTCCTCAGAGCTCCTCACTGAGTGGGACCTGCTGCGGGCAGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS CCA 72 bp | GGTTCTGCTGTCGGAGGCGGTGATTCGCCATCTTCATaGAGTCATCCGCCCAGCCTCCCTGCCTTCGAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: GSAVGGGDSPSS*SHPPSLPAFEV Trigger: CACCTCGAAGGCAGGGAGGCTGGGCGGATGACTCCATGAAGATGGCGAATCACCGCCTCCGACAGCAGAACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054565.8 |
||
| CDS GCA 72 bp | TCCCAGTCCCAGCCCACATCATCCTCTCGCACTTCATaGTCTGGGGCCAGCACTTTGGTGAGGAGTTTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: SQSQPTSSSRTS*SGASTLVRSFR Trigger: CCTGAAACTCCTCACCAAAGTGCTGGCCCCAGAGCATGAAGTGCGAGAGGATGATGTGGGCTGGGACTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS CCA 72 bp | TCAGTGAGGAGCTCTGAGGACACCTCGGTGTACAGATaGTCCCAGTCCCAGCCCACATCATCCTCTCGCACT | + |
|
Preference number: 6 (lower is better) Translates to: SVRSSEDTSVYR*SQSQPTSSSRT Trigger: AGTGCGAGAGGATGATGTGGGCTGGGACTGGGACCATCTGTACACCGAGGTGTCCTCAGAGCTCCTCACTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS TCA 72 bp | TTCCAGGTCTGGGATCACAGGAATATCGTCGTCGTCTaGCCCCATCAGGTTCTGCTGTCGGAGGCGGTGATC | + |
|
Preference number: 6 (lower is better) Translates to: FQVWDHRNIVVV*PHQVLLSEAVI Trigger: GATCACCGCCTCCGACAGCAGAACCTGATGGGGTCAGACGACGACGATATTCCTGTGATCCCAGACCTGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS TCA 72 bp | TTCCAGGTCTGGGATCACAGGAATATCGTCGTCGTCTaGCCCCATCAGGTTCTGCTGTCGGAGGCGGTGATT | + |
|
Preference number: 6 (lower is better) Translates to: FQVWDHRNIVVV*PHQVLLSEAVI Trigger: AATCACCGCCTCCGACAGCAGAACCTGATGGGGTCAGACGACGACGATATTCCTGTGATCCCAGACCTGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054565.8 |
||
| CDS CCA 72 bp | GTCCCAGCCCACATCATCCTCTCGCACTTCATGCTCTaGGGCCAGCACTTTGGTGAGGAGTTTCAGGTCAAT | + |
|
Preference number: 6 (lower is better) Translates to: VPAHIILSHFML*GQHFGEEFQVN Trigger: ATTGACCTGAAACTCCTCACCAAAGTGCTGGCCCCAGAGCATGAAGTGCGAGAGGATGATGTGGGCTGGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS GCA 72 bp | GGAGGAGACGCCACCTGTAGCACAAAGTCTTCCTCCTaGACATCTTCCAGGTCTGGGATCACAGGAATATCG | + |
|
Preference number: 6 (lower is better) Translates to: GGDATCSTKSSS*TSSRSGITGIS Trigger: CGATATTCCTGTGATCCCAGACCTGGAAGATGTGCAGGAGGAAGACTTTGTGCTACAGGTGGCGTCTCCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS CCA 72 bp | CTTCAGAAACTTTCTTTCCCAATTTCGCCATCTTCATaGAGTCATCCGCCCAGCCTCCCTGCCTTCGAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: LQKLSFPISPSS*SHPPSLPAFEV Trigger: CACCTCGAAGGCAGGGAGGCTGGGCGGATGACTCCATGAAGATGGCGAAATTGGGAAAGAAAGTTTCTGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS CAA 72 bp | GGTCACGGTAGGTCATCACTCGGTTTACCTGGATACTaGGAGGAGACGCCACCTGTAGCACAAAGTCTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: GHGRSSLGLPGY*EETPPVAQSLP Trigger: AGGAAGACTTTGTGCTACAGGTGGCGTCTCCTCCAAGTATCCAGGTAAACCGAGTGATGACCTACCGTGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS TCA 72 bp | CCTCTCGCACTTCATGCTCTGGGGCCAGCACTTTGGTaGGGAGTTTCAGGTCAATTTCTCCATCCAAAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: PLALHALGPALW*GVSGQFLHPKS Trigger: AGACTTTGGATGGAGAAATTGACCTGAAACTCCTCACCAAAGTGCTGGCCCCAGAGCATGAAGTGCGAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 |
||
| CDS TCA 72 bp | TTTCTCCATCCAAAGTCTGAAAGGCCGAGTACTTCATaGGGTCATTGTCCAGGTCACGGTAGGTCATCACTC | + |
|
Preference number: 6 (lower is better) Translates to: FLHPKSERPSTS*GHCPGHGRSSL Trigger: GAGTGATGACCTACCGTGACCTGGACAATGACCTCATGAAGTACTCGGCCTTTCAGACTTTGGATGGAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 ENSMUST00000222905.2 |
||
| CDS GCA 72 bp | GGGGAGCCTCTCCAGTCTGAGTCAGTGAAGAATTCTTaGTGTTTAAGTAATTCTCAGCCTGAGTCGACTCCT | + |
|
Preference number: 6 (lower is better) Translates to: GEPLQSESVKNS*CLSNSQPESTP Trigger: AGGAGTCGACTCAGGCTGAGAATTACTTAAACAGCAAGAATTCTTCACTGACTCAGACTGGAGAGGCTCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000054565.8 ENSMUST00000222821.2 ENSMUST00000222905.2 |
||