RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IFT27 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000016637

Ensembl transcript IDs: ENSMUST00000016781.8, ENSMUST00000229476.2, ENSMUST00000230844.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATGGTGGATACTGAGAAATCCCAGGTGATCCCGTCTTCTGTCTCCTaGAAAGACAATGGTCTGCTGGGCTCACAGCAGCAGCGGCAGAGT +
Preference number: 1 (lower is better)
Translates to: MVDTEKSQVIPSSVS*KDNGLLGSQQQRQS
Trigger: ACTCTGCCGCTGCTGCTGTGAGCCCAGCAGACCATTGTCTTTTCAGGAGACAGAAGACGGGATCACCTGGGATTTCTCAGTATCCACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
3UTR-3UTR CCA 90 bp GCTCTTCTCATTTTATTGAAAACCATGGTGGATACTGAGAAATCCCAGGTGATCAAGACAATGGTCTGCTaGGCTCACAGCAGCAGCGGC +
Preference number: 2 (lower is better)
Translates to: ALLILLKTMVDTEKSQVIKTMVC*AHSSSG
Trigger: GCCGCTGCTGCTGTGAGCCCAGCAGACCATTGTCTT...GATCACCTGGGATTTCTCAGTATCCACCATGGTTTTCAATAAAATGAGAAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
3UTR TCA 72 bp ACTGAGAAATCCCAGGTGATCCCGTCTTCTGTCTCCTaGAAAGACAATGGTCTGCTGGGCTCACAGCAGCAG +
Preference number: 3 (lower is better)
Translates to: TEKSQVIPSSVS*KDNGLLGSQQQ
Trigger: CTGCTGCTGTGAGCCCAGCAGACCATTGTCTTTTCAGGAGACAGAAGACGGGATCACCTGGGATTTCTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
3UTR TCA 72 bp TGCTCTTCTCATTTTATTGAAAACCATGGTGGATACTaGGAAATCCCAGGTGATCCCGTCTTCTGTCTCCTG +
Preference number: 3 (lower is better)
Translates to: CSSHFIENHGGY*EIPGDPVFCLL
Trigger: CAGGAGACAGAAGACGGGATCACCTGGGATTTCTCAGTATCCACCATGGTTTTCAATAAAATGAGAAGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR CCA 90 bp GAAAAGACAATGGTCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCAGCCCTGCTGGTAGAACTGCTTaGCCAGACAGTGGAACGGGG +
Preference number: 4 (lower is better)
Translates to: EKTMVCWAHSSSGRVGSPAGRTA*PDSGTG
Trigger: CCCCGTTCCACTGTCTGGCCAAGCAGTTCTACCAGC...AGGGCTGCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGACCATTGTCTTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR CCA 90 bp CTGAAAAGACAATGGTCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCAGCCGCTGGTAGAACTGCTTaGCCAGACAGTGGAACGGGG +
Preference number: 4 (lower is better)
Translates to: LKRQWSAGLTAAAAEWAAAGRTA*PDSGTG
Trigger: CCCCGTTCCACTGTCTGGCCAAGCAGTTCTACCAGC...GGCTGCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGACCATTGTCTTTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR TCA 90 bp CAATGGTCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCAGCCCTTCAGGACCAGCTCCTTGCCGGCTaGGTCAAAAATGAAGAGTTC +
Preference number: 4 (lower is better)
Translates to: QWSAGLTAAAAEWAALQDQLLAG*VKNEEF
Trigger: GAACTCTTCATTTTTGACTCAGCCGGCAAGGAGCTG...GTCCTGAAGGGCTGCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGACCATTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR TCA 90 bp TCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCAGCCCTTCAGGACAGTCCACAGCTCCTTGCCGGCTaGGTCAAAAATGAAGAGTTC +
Preference number: 4 (lower is better)
Translates to: SAGLTAAAAEWAALQDSPQLLAG*VKNEEF
Trigger: GAACTCTTCATTTTTGACTCAGCCGGCAAGGAGCTG...TGGACTGTCCTGAAGGGCTGCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR CCA 90 bp TCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCAGCCCTTCAGGACAGTCCACAAGGCACAGGACGTTaGGATTCTCCCACAACTTAT +
Preference number: 4 (lower is better)
Translates to: SAGLTAAAAEWAALQDSPQGTGR*DSPTTY
Trigger: ATAAGTTGTGGGAGAATCCCAACGTCCTGTGCCTTG...TGGACTGTCCTGAAGGGCTGCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR CCA 90 bp AGACAATGGTCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCAGCCCTTCAGCAAGGCACAGGACGTTaGGATTCTCCCACAACTTAT +
Preference number: 4 (lower is better)
Translates to: RQWSAGLTAAAAEWAALQQGTGR*DSPTTY
Trigger: ATAAGTTGTGGGAGAATCCCAACGTCCTGTGCCTTG...CTGAAGGGCTGCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGACCATTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR GCA 90 bp CTTCTCATTTTATTGAAAACCATGGTGGATACTGAGAAATCCCAGGTGATCCCGGGTCCCCTGCCAGGATaGATTTGGCAGCTAGCTTCA +
Preference number: 4 (lower is better)
Translates to: LLILLKTMVDTEKSQVIPGPLPG*IWQLAS
Trigger: TGAAGCTAGCTGCCAAATGCATCCTGGCAGGGGACC...CGGGATCACCTGGGATTTCTCAGTATCCACCATGGTTTTCAATAAAATGAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000016781.8
CDS GCA 90 bp GGAAATGGGTCCCGTCGCTGCGGAACATCTGCACCAGGGCCGTCTTaGCTACGGCTGGGTCCCCTGCCAGGATGCATTTGGCAGCTAGCT +
Preference number: 5 (lower is better)
Translates to: GNGSRRCGTSAPGPS*LRLGPLPGCIWQLA
Trigger: AGCTAGCTGCCAAATGCATCCTGGCAGGGGACCCAGCCGTAGGCAAGACGGCCCTGGTGCAGATGTTCCGCAGCGACGGGACCCATTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000016781.8
CDS GCA 90 bp CTCCAGTTGTCAGGGTGTAGTTCTTCTGGAAATGGGTCCCGTCGCTaGGGAACATCTGCACCAGGGCCGTCTTGCCTACGGCTGGGTCCC +
Preference number: 5 (lower is better)
Translates to: LQLSGCSSSGNGSRR*GTSAPGPSCLRLGP
Trigger: GGGACCCAGCCGTAGGCAAGACGGCCCTGGTGCAGATGTTCCGCAGCGACGGGACCCATTTCCAGAAGAACTACACCCTGACAACTGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000229476.2
CDS-3UTR CAA 90 bp TCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCAGCCCTTCAGGACAGTCCAGTTCCACACTGTCATTaGTGTCAAGAACTGGCACTG +
Preference number: 5 (lower is better)
Translates to: SAGLTAAAAEWAALQDSPVPHCH*CQELAL
Trigger: CAGTGCCAGTTCTTGACACAAATGACAGTGTGGAAC...TGGACTGTCCTGAAGGGCTGCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR CAA 90 bp CTGAAAAGACAATGGTCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCAGCCACCTTCTCCAACCACTaGGTGCAGCTGATGAAGGAC +
Preference number: 5 (lower is better)
Translates to: LKRQWSAGLTAAAAEWAATFSNH*VQLMKD
Trigger: GTCCTTCATCAGCTGCACCAAGTGGTTGGAGAAGGT...GGCTGCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGACCATTGTCTTTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR CAA 90 bp TCTCCTGAAAAGACAATGGTCTGCTGGGCTCACAGCAGCAGCGGCAGAGTGGGCTCAGAGAACAGCTCCTaGCCGGCTGAGTCAAAAATG +
Preference number: 5 (lower is better)
Translates to: SPEKTMVCWAHSSSGRVGSENSS*PAESKM
Trigger: CATTTTTGACTCAGCCGGCAAGGAGCTGTTCTCTGA...GCCCACTCTGCCGCTGCTGCTGTGAGCCCAGCAGACCATTGTCTTTTCAGGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS TCA 90 bp AAAGAATTCCAGGCCTTGACTCAGTGCCCATACCTGGGCCTGAGCTaGATCCACTGTTTGTCGGCCAGCCAGGTCTGTCTTAGTTCCCAC +
Preference number: 5 (lower is better)
Translates to: KEFQALTQCPYLGLS*IHCLSASQVCLSSH
Trigger: GTGGGAACTAAGACAGACCTGGCTGGCCGACAAACAGTGGATTCAGCTCAGGCCCAGGTATGGGCACTGAGTCAAGGCCTGGAATTCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS TCA 90 bp CTCCCACAACTTATCCAGCATTTCAGAGAACAGCTCCTTGCCGGCTaGGTCAAAAATGAAGAGTTCCACACTGTCATTTGTGTCAAGAAC +
Preference number: 5 (lower is better)
Translates to: LPQLIQHFREQLLAG*VKNEEFHTVICVKN
Trigger: GTTCTTGACACAAATGACAGTGTGGAACTCTTCATTTTTGACTCAGCCGGCAAGGAGCTGTTCTCTGAAATGCTGGATAAGTTGTGGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000016781.8
ENSMUST00000229476.2
ENSMUST00000230844.2
CDS-3UTR CAA 90 bp CTTCTCATTTTATTGAAAACCATGGTGGATACTGAGAAATCCCAGGTGATCCCGAAAGAATTCCAGGCCTaGACTCAGTGCCCATACCTG +
Preference number: 5 (lower is better)
Translates to: LLILLKTMVDTEKSQVIPKEFQA*TQCPYL
Trigger: CAGGTATGGGCACTGAGTCAAGGCCTGGAATTCTTT...CGGGATCACCTGGGATTTCTCAGTATCCACCATGGTTTTCAATAAAATGAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS-3UTR CAA 90 bp GCTCTTCTCATTTTATTGAAAACCATGGTGGATACTGAGAAATCCCAGGTGATCGTTCCACACTGTCATTaGTGTCAAGAACTGGCACTG +
Preference number: 5 (lower is better)
Translates to: ALLILLKTMVDTEKSQVIVPHCH*CQELAL
Trigger: CAGTGCCAGTTCTTGACACAAATGACAGTGTGGAAC...GATCACCTGGGATTTCTCAGTATCCACCATGGTTTTCAATAAAATGAGAAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000230844.2
CDS GCA 72 bp TCCCGTCGCTGCGGAACATCTGCACCAGGGCCGTCTTaGCTACGGCTGGGTCCCCTGCCAGGATGCATTTGG +
Preference number: 6 (lower is better)
Translates to: SRRCGTSAPGPS*LRLGPLPGCIW
Trigger: CCAAATGCATCCTGGCAGGGGACCCAGCCGTAGGCAAGACGGCCCTGGTGCAGATGTTCCGCAGCGACGGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000016781.8
CDS GCA 72 bp TTCTTCTGGAAATGGGTCCCGTCGCTGCGGAACATCTaGACCAGGGCCGTCTTGCCTACGGCTGGGTCCCCC +
Preference number: 6 (lower is better)
Translates to: FFWKWVPSLRNI*TRAVLPTAGSP
Trigger: GGGGGACCCAGCCGTAGGCAAGACGGCCCTGGTGCAGATGTTCCGCAGCGACGGGACCCATTTCCAGAAGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229476.2
CDS CAA 90 bp TGGAAATGGGTCCCGTCGCTGCGGAACATCTGCACCAGGGCCGTCTaGCCTACGGCTGGGTCCCCTGCCAGGATGCATTTGGCAGCTAGC +
Preference number: 6 (lower is better)
Translates to: WKWVPSLRNICTRAV*PTAGSPARMHLAAS
Trigger: GCTAGCTGCCAAATGCATCCTGGCAGGGGACCCAGCCGTAGGCAAGACGGCCCTGGTGCAGATGTTCCGCAGCGACGGGACCCATTTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000016781.8
CDS GCA 72 bp TTCTTCTGGAAATGGGTCCCGTCGCTGCGGAACATCTaGACCAGGGCCGTCTTGCCTACGGCTGGGTCCCCT +
Preference number: 6 (lower is better)
Translates to: FFWKWVPSLRNI*TRAVLPTAGSP
Trigger: AGGGGACCCAGCCGTAGGCAAGACGGCCCTGGTGCAGATGTTCCGCAGCGACGGGACCCATTTCCAGAAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000016781.8
CDS GCA 72 bp TCAGGGTGTAGTTCTTCTGGAAATGGGTCCCGTCGCTaGGGAACATCTGCACCAGGGCCGTCTTGCCTACGG +
Preference number: 6 (lower is better)
Translates to: SGCSSSGNGSRR*GTSAPGPSCLR
Trigger: CCGTAGGCAAGACGGCCCTGGTGCAGATGTTCCGCAGCGACGGGACCCATTTCCAGAAGAACTACACCCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000016781.8
ENSMUST00000229476.2
CDS CAA 90 bp TTGGGATTCTCCCACAACTTATCCAGCATTTCAGAGAACAGCTCCTaGCCGGCTGAGTCAAAAATGAAGAGTTCCACACTGTCATTTGTG +
Preference number: 6 (lower is better)
Translates to: LGFSHNLSSISENSS*PAESKMKSSTLSFV
Trigger: CACAAATGACAGTGTGGAACTCTTCATTTTTGACTCAGCCGGCAAGGAGCTGTTCTCTGAAATGCTGGATAAGTTGTGGGAGAATCCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000016781.8
ENSMUST00000229476.2
ENSMUST00000230844.2
CDS TCA 72 bp TTTCAGAGAACAGCTCCTTGCCGGCTGAGTCAAAAATaGAGAGTTCCACACTGTCATTTGTGTCAAGAACTG +
Preference number: 6 (lower is better)
Translates to: FQRTAPCRLSQK*RVPHCHLCQEL
Trigger: CAGTTCTTGACACAAATGACAGTGTGGAACTCTTCATTTTTGACTCAGCCGGCAAGGAGCTGTTCTCTGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000016781.8
ENSMUST00000229476.2
ENSMUST00000230844.2