Pregenerated sensors for IFT20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001105Ensembl transcript IDs: ENSMUST00000050366.15, ENSMUST00000108275.2, ENSMUST00000128788.8
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTACAGACACTGAGTTTGTGCTGAGAAGTCGAGCTGAAGCCCTGTaGTGCCTGGCCACTAGCAGAGGCTGTGCACTGTTTATCAGCTGC | + |
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Preference number: 1 (lower is better) Translates to: FTDTEFVLRSRAEAL*CLATSRGCALFISC Trigger: GCAGCTGATAAACAGTGCACAGCCTCTGCTAGTGGCCAGGCAGCACAGGGCTTCAGCTCGACTTCTCAGCACAAACTCAGTGTCTGTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| 3UTR-3UTR GCA 90 bp | TTTACAGACACTGAGTTTGTGCTGAGAAGTCGAGCTGAAGCCCTGTGCTGCCTGGCACTGTTTATCAGCTaGCCCCGTAACACTGCATGC | + |
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Preference number: 2 (lower is better) Translates to: FTDTEFVLRSRAEALCCLALFIS*PRNTAC Trigger: GCATGCAGTGTTACGGGGGCAGCTGATAAACAGTGC...CAGGCAGCACAGGGCTTCAGCTCGACTTCTCAGCACAAACTCAGTGTCTGTAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| 3UTR-3UTR GCA 90 bp | TTGCTTTTCCTTGAGAGCTTTGTGAATGTACCAAAGTTTACAGACACTGAGTTTCGAGCTGAAGCCCTGTaGTGCCTGGCCACTAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: LLFLESFVNVPKFTDTEFRAEAL*CLATSR Trigger: TCTGCTAGTGGCCAGGCAGCACAGGGCTTCAGCTCG...AAACTCAGTGTCTGTAAACTTTGGTACATTCACAAAGCTCTCAAGGAAAAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| 3UTR GCA 72 bp | GAGTTTGTGCTGAGAAGTCGAGCTGAAGCCCTGTGCTaGCTGGCCACTAGCAGAGGCTGTGCACTGTTTATC | + |
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Preference number: 3 (lower is better) Translates to: EFVLRSRAEALC*LATSRGCALFI Trigger: GATAAACAGTGCACAGCCTCTGCTAGTGGCCAGGCAGCACAGGGCTTCAGCTCGACTTCTCAGCACAAACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| 3UTR GCA 72 bp | ACTGAGTTTGTGCTGAGAAGTCGAGCTGAAGCCCTGTaGTGCCTGGCCACTAGCAGAGGCTGTGCACTGTTT | + |
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Preference number: 3 (lower is better) Translates to: TEFVLRSRAEAL*CLATSRGCALF Trigger: AAACAGTGCACAGCCTCTGCTAGTGGCCAGGCAGCACAGGGCTTCAGCTCGACTTCTCAGCACAAACTCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| 3UTR TCA 72 bp | GCAAATGGTATTTATTGCTTTTCCTTGAGAGCTTTGTaGATGTACCAAAGTTTACAGACACTGAGTTTGTGC | + |
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Preference number: 3 (lower is better) Translates to: ANGIYCFSLRAL*MYQSLQTLSLC Trigger: GCACAAACTCAGTGTCTGTAAACTTTGGTACATTCACAAAGCTCTCAAGGAAAAGCAATAAATACCATTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR GCA 90 bp | GAGCTGAAGCCCTGTGCTGCCTGGCCACTAGCAGAGGCTGTGCACTGTTTATCAATCAGGGCCTGCAGCTaGTGCTGCTGGGCTTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: ELKPCAAWPLAEAVHCLSIRACS*CCWASL Trigger: GAGAGAAGCCCAGCAGCAGCAGCTGCAGGCCCTGAT...TGATAAACAGTGCACAGCCTCTGCTAGTGGCCAGGCAGCACAGGGCTTCAGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR GCA 90 bp | GAGCTGAAGCCCTGTGCTGCCTGGCCACTAGCAGAGGCTGTGCACTGTTTATCATCTGCTATCAGGGCCTaGAGCTGCTGCTGCTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: ELKPCAAWPLAEAVHCLSSAIRA*SCCCWA Trigger: AGCCCAGCAGCAGCAGCTGCAGGCCCTGATAGCAGA...TGATAAACAGTGCACAGCCTCTGCTAGTGGCCAGGCAGCACAGGGCTTCAGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR CCA 90 bp | TGCCTGGCCACTAGCAGAGGCTGTGCACTGTTTATCAGCTGCCCCCGTAACACTAGCTCCACAGTCTGCTaGGTGACCTCTGGGTCCAAC | + |
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Preference number: 4 (lower is better) Translates to: CLATSRGCALFISCPRNTSSTVC*VTSGSN Trigger: GTTGGACCCAGAGGTCACCCAGCAGACTGTGGAGCT...AGTGTTACGGGGGCAGCTGATAAACAGTGCACAGCCTCTGCTAGTGGCCAGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR CCA 90 bp | TGCCTGGCCACTAGCAGAGGCTGTGCACTGTTTATCAGCTGCCCCCGTAACACTCTCTCTGCTTCGCTATaGACTTCAGCAAGTTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: CLATSRGCALFISCPRNTLSASL*TSASSE Trigger: CTCGGAACTTGCTGAAGTCCATAGCGAAGCAGAGAG...AGTGTTACGGGGGCAGCTGATAAACAGTGCACAGCCTCTGCTAGTGGCCAGGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR GCA 90 bp | TCAGCTGCCCCCGTAACACTGCATGCGCACATCAGTGACATCACTGGAATGGTACTGCGTCTTCTTTTCTaGTATCAGGGCCTGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: SAAPVTLHAHISDITGMVLRLLF*YQGLQL Trigger: CAGCTGCAGGCCCTGATAGCAGAAAAGAAGACGCAG...TACCATTCCAGTGATGTCACTGATGTGCGCATGCAGTGTTACGGGGGCAGCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR CCA 90 bp | ACAGACACTGAGTTTGTGCTGAGAAGTCGAGCTGAAGCCCTGTGCTGCCTGGCCAGTTCCGAGCACCAATaGCCTTCATCTTCTCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: TDTEFVLRSRAEALCCLASSEHQ*PSSSRS Trigger: AGAACGAGAAGATGAAGGCCATTGGTGCTCGGAACT...GGCCAGGCAGCACAGGGCTTCAGCTCGACTTCTCAGCACAAACTCAGTGTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR GCA 90 bp | CTGAAGCCCTGTGCTGCCTGGCCACTAGCAGAGGCTGTGCACTGTTTATCAGCTCATCTTCTCGTTCTCTaGTTCTTTGGCAAGCTGATC | + |
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Preference number: 4 (lower is better) Translates to: LKPCAAWPLAEAVHCLSAHLLVL*FFGKLI Trigger: GATCAGCTTGCCAAAGAAGCAGAGAACGAGAAGATG...AGCTGATAAACAGTGCACAGCCTCTGCTAGTGGCCAGGCAGCACAGGGCTTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR TCA 90 bp | ACTGAGTTTGTGCTGAGAAGTCGAGCTGAAGCCCTGTGCTGCCTGGCCACTAGCCCACCAACAATTTTCTaGAACTGGCCAATTTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: TEFVLRSRAEALCCLATSPPTIF*NWPILS Trigger: GGACAAAATTGGCCAGTTTCAGAAAATTGTTGGTGG...GCTAGTGGCCAGGCAGCACAGGGCTTCAGCTCGACTTCTCAGCACAAACTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR GCA 90 bp | TGCCTGGCCACTAGCAGAGGCTGTGCACTGTTTATCAGCTGCCCCCGTAACACTCGATACCTTTCTAGCTaGGTCTTCTTTTCTGCTATC | + |
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Preference number: 4 (lower is better) Translates to: CLATSRGCALFISCPRNTRYLSS*VFFSAI Trigger: GATAGCAGAAAAGAAGACGCAGCTAGAAAGGTATCG...AGTGTTACGGGGGCAGCTGATAAACAGTGCACAGCCTCTGCTAGTGGCCAGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR TCA 90 bp | AAAGACCAAGCCACTTGCAAATGGTATTTATTGCTTTTCCTTGAGAGCTTTGTGCCTTGCACTCCTCCTTaGGCTCCACAGTCTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: KDQATCKWYLLLFLESFVPCTPP*APQSAG Trigger: CCCAGCAGACTGTGGAGCTCAAGGAGGAGTGCAAGG...CACAAAGCTCTCAAGGAAAAGCAATAAATACCATTTGCAAGTGGCTTGGTCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS CCA 90 bp | TTGTCCACAAAGTCCTTGCACTCCTCCTTGAGCTCCACAGTCTGCTaGGTGACCTCTGGGTCCAACACTCGGAGCTTGTTCAGTTCATCA | + |
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Preference number: 5 (lower is better) Translates to: LSTKSLHSSLSSTVC*VTSGSNTRSLFSSS Trigger: TGATGAACTGAACAAGCTCCGAGTGTTGGACCCAGAGGTCACCCAGCAGACTGTGGAGCTCAAGGAGGAGTGCAAGGACTTTGTGGACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050366.15 ENSMUST00000108275.2 ENSMUST00000128788.8 |
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| CDS GCA 90 bp | ATTTTGTCCACAAAGTCCTTGCACTCCTCCTTGAGCTCCACAGTCTaGTGGGTGACCTCTGGGTCCAACACTCGGAGCTTGTTCAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: ILSTKSLHSSLSSTV*WVTSGSNTRSLFSS Trigger: TGAACTGAACAAGCTCCGAGTGTTGGACCCAGAGGTCACCCAGCAGACTGTGGAGCTCAAGGAGGAGTGCAAGGACTTTGTGGACAAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050366.15 ENSMUST00000108275.2 ENSMUST00000128788.8 |
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| CDS-3UTR CAA 90 bp | TCAGCTGCCCCCGTAACACTGCATGCGCACATCAGTGACATCACTGGAATGGTATCCAACACTCGGAGCTaGTTCAGTTCATCAAAATGC | + |
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Preference number: 5 (lower is better) Translates to: SAAPVTLHAHISDITGMVSNTRS*FSSSKC Trigger: GCATTTTGATGAACTGAACAAGCTCCGAGTGTTGGA...TACCATTCCAGTGATGTCACTGATGTGCGCATGCAGTGTTACGGGGGCAGCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR CAA 90 bp | AAAGACCAAGCCACTTGCAAATGGTATTTATTGCTTTTCCTTGAGAGCTTTGTGTCCTTGCACTCCTCCTaGAGCTCCACAGTCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: KDQATCKWYLLLFLESFVSLHSS*SSTVCW Trigger: CCAGCAGACTGTGGAGCTCAAGGAGGAGTGCAAGGA...CACAAAGCTCTCAAGGAAAAGCAATAAATACCATTTGCAAGTGGCTTGGTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS-3UTR CAA 90 bp | AAAGACCAAGCCACTTGCAAATGGTATTTATTGCTTTTCCTTGAGAGCTTTGTGTTGTCCACAAAGTCCTaGCACTCCTCCTTGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: KDQATCKWYLLLFLESFVLSTKS*HSSLSS Trigger: GGAGCTCAAGGAGGAGTGCAAGGACTTTGTGGACAA...CACAAAGCTCTCAAGGAAAAGCAATAAATACCATTTGCAAGTGGCTTGGTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128788.8 |
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| CDS GCA 72 bp | ACAAAGTCCTTGCACTCCTCCTTGAGCTCCACAGTCTaGTGGGTGACCTCTGGGTCCAACACTCGGAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: TKSLHSSLSSTV*WVTSGSNTRSL Trigger: CAAGCTCCGAGTGTTGGACCCAGAGGTCACCCAGCAGACTGTGGAGCTCAAGGAGGAGTGCAAGGACTTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050366.15 ENSMUST00000108275.2 ENSMUST00000128788.8 |
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| CDS GCA 72 bp | AGCTGCGTCTTCTTTTCTGCTATCAGGGCCTGCAGCTaGTGCTGCTGGGCTTCTCTCTGCTTCGCTATGGAC | + |
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Preference number: 6 (lower is better) Translates to: SCVFFSAIRACS*CCWASLCFAMD Trigger: GTCCATAGCGAAGCAGAGAGAAGCCCAGCAGCAGCAGCTGCAGGCCCTGATAGCAGAAAAGAAGACGCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050366.15 ENSMUST00000108275.2 ENSMUST00000128788.8 |
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