RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IFRD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000010048

Ensembl transcript IDs: ENSMUST00000010192.11, ENSMUST00000193140.2, ENSMUST00000195725.6, ENSMUST00000195746.2

Found 137 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAATGGAGCGCTGGCGCCGCCGGTCAACCTTGGCACGGTACTTATTaGTGTCGGTGGCTAGGGTACGCAGAGATCCACAGAGGGCCTCCA +
Preference number: 1 (lower is better)
Translates to: KWSAGAAGQPWHGTY*CRWLGYAEIHRGPP
Trigger: TGGAGGCCCTCTGTGGATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR CCA 90 bp GCAGCACAGCTCGGAAAATGGAGCGCTGGCGCCGCCGGTCAACCTTaGCACGGTACTTATTGCTGTCGGTGGCTAGGGTACGCAGAGATC +
Preference number: 1 (lower is better)
Translates to: AAQLGKWSAGAAGQP*HGTYCCRWLGYAEI
Trigger: GATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTTCCGAGCTGTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR CCA 90 bp GCTGGCGCCGCCGGTCAACCTTGGCACGGTACTTATTGCTGTCGGTaGCTAGGGTACGCAGAGATCCACAGAGGGCCTCCATGTCTTCAT +
Preference number: 1 (lower is better)
Translates to: AGAAGQPWHGTYCCR*LGYAEIHRGPPCLH
Trigger: ATGAAGACATGGAGGCCCTCTGTGGATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR GCA 90 bp CTCGTTGGCCAGTCTGATTCACAAGATATCTGCCCGCTTGTCCCTTaGACGACTACGGGCCTTGGTCCGGGCTTTGAAGGCTGCAGCATT +
Preference number: 1 (lower is better)
Translates to: LVGQSDSQDICPLVP*TTTGLGPGFEGCSI
Trigger: AATGCTGCAGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAATCAGACTGGCCAACGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR GCA 90 bp GGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATTCACAAGATATCTaGCCGCTTGTCCCTTGCACGACTACGGGCCTTGGTCCGGGCTTT +
Preference number: 1 (lower is better)
Translates to: GMGSLLVGQSDSQDI*PLVPCTTTGLGPGF
Trigger: AAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAATCAGACTGGCCAACGAGAAGGCTACCCATACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR TCA 90 bp CTGCCCGCTTGTCCCTTGCACGACTACGGGCCTTGGTCCGGGCTTTaGAGGCTGCAGCATTGTACAGGTGCTTTTCAAAGCGTGAAATCT +
Preference number: 1 (lower is better)
Translates to: LPACPLHDYGPWSGL*RLQHCTGAFQSVKS
Trigger: AGATTTCACGCTTTGAAAAGCACCTGTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR CCA 90 bp ATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTAAAAATATaGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATTCACAA +
Preference number: 1 (lower is better)
Translates to: ITGRDQFLHCLLLKI*YGMGSLLVGQSDSQ
Trigger: TTGTGAATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR CAA 90 bp AAAATGGAGCGCTGGCGCCGCCGGTCAACCTTGGCACGGTACTTATaGCTGTCGGTGGCTAGGGTACGCAGAGATCCACAGAGGGCCTCC +
Preference number: 2 (lower is better)
Translates to: KMERWRRRSTLARYL*LSVARVRRDPQRAS
Trigger: GGAGGCCCTCTGTGGATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR-3UTR CCA 90 bp TCAAGGTCCCGGGCAAGCTCAAAGAGTAGCGCGATGGCTTCACCAGCAGCAATCTCACTGGACAAGAGCTaGGGCAGCCGGGGCAGCTGC +
Preference number: 2 (lower is better)
Translates to: SRSRASSKSSAMASPAAISLDKS*GSRGSC
Trigger: GCAGCTGCCCCGGCTGCCCCAGCTCTTGTCCAGTGA...GATTGCTGCTGGTGAAGCCATCGCGCTACTCTTTGAGCTTGCCCGGGACCTTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR-3UTR CCA 90 bp GCACAGCTCGGAAAATGGAGCGCTGGCGCCGCCGGTCAACCTTGGCACGGTACTGGTTCACACTTTCACTaGACAAGAGCTGGGGCAGCC +
Preference number: 2 (lower is better)
Translates to: AQLGKWSAGAAGQPWHGTGSHFH*TRAGAA
Trigger: GGCTGCCCCAGCTCTTGTCCAGTGAAAGTGTGAACC...AGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTTCCGAGCTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR-3UTR GCA 90 bp GCCCGCTTGTCCCTTGCACGACTACGGGCCTTGGTCCGGGCTTTGAAGGCTGCACAAAGCGTGAAATCTTaGAGGCCTTCAGGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: ARLSLARLRALVRALKAAQSVKS*RPSGQQ
Trigger: CTGCTGCCCTGAAGGCCTGCAAGATTTCACGCTTTG...TGCAGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR CAA 90 bp GTAGCCTTCTCGTTGGCCAGTCTGATTCACAAGATATCTGCCCGCTaGTCCCTTGCACGACTACGGGCCTTGGTCCGGGCTTTGAAGGCT +
Preference number: 2 (lower is better)
Translates to: VAFSLASLIHKISAR*SLARLRALVRALKA
Trigger: AGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAATCAGACTGGCCAACGAGAAGGCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR CAA 90 bp TCTGCCCGCTTGTCCCTTGCACGACTACGGGCCTTGGTCCGGGCTTaGAAGGCTGCAGCATTGTACAGGTGCTTTTCAAAGCGTGAAATC +
Preference number: 2 (lower is better)
Translates to: SARLSLARLRALVRA*KAAALYRCFSKREI
Trigger: GATTTCACGCTTTGAAAAGCACCTGTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR CAA 90 bp ATTCACAAGATATCTGCCCGCTTGTCCCTTGCACGACTACGGGCCTaGGTCCGGGCTTTGAAGGCTGCAGCATTGTACAGGTGCTTTTCA +
Preference number: 2 (lower is better)
Translates to: IHKISARLSLARLRA*VRALKAAALYRCFS
Trigger: TGAAAAGCACCTGTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR-3UTR TCA 90 bp GTTGGCCAGTCTGATTCACAAGATATCTGCCCGCTTGTCCCTTGCACGACTACGGTGCTTTTCAAAGCGTaGAATCTTGCAGGCCTTCAG +
Preference number: 2 (lower is better)
Translates to: VGQSDSQDICPLVPCTTTVLFKA*NLAGLQ
Trigger: CTGAAGGCCTGCAAGATTTCACGCTTTGAAAAGCAC...CGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAATCAGACTGGCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR-3UTR GCA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTATGCCCGCTTGTCCCTTaGACGACTACGGGCCTTGGT +
Preference number: 2 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLCPLVP*TTTGLG
Trigger: ACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCA...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR-3UTR TCA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTACCACAGCCACAGAGCTaGGTGCACATACAAAGGGCT +
Preference number: 2 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLPQPQS*VHIQRA
Trigger: AGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGG...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
3UTR-3UTR CCA 90 bp GCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGTCTTCTGTTAAAAATATaGTATGGTATGGGTAGCCTT +
Preference number: 2 (lower is better)
Translates to: AHTSIIGSFAYPMPWRPGLLLKI*YGMGSL
Trigger: AAGGCTACCCATACCATACCATATTTTTAACAGAAG...ACCTGGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
3UTR-3UTR CCA 90 bp CTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATTCACTTCTGTTAAAAATATaGTATGGTATGGGTAGCCTT +
Preference number: 2 (lower is better)
Translates to: LLKIWYGMGSLLVGQSDSLLLKI*YGMGSL
Trigger: AAGGCTACCCATACCATACCATATTTTTAACAGAAG...TGAATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR-3UTR CCA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTACTTCTGTTAAAAATATaGTATGGTATGGGTAGCCTT +
Preference number: 2 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLLLLKI*YGMGSL
Trigger: AAGGCTACCCATACCATACCATATTTTTAACAGAAG...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
ENSMUST00000195746.2
3UTR GCA 72 bp GCTGGCGCCGCCGGTCAACCTTGGCACGGTACTTATTaGTGTCGGTGGCTAGGGTACGCAGAGATCCACAGA +
Preference number: 3 (lower is better)
Translates to: AGAAGQPWHGTY*CRWLGYAEIHR
Trigger: TCTGTGGATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR CCA 72 bp CTCGGAAAATGGAGCGCTGGCGCCGCCGGTCAACCTTaGCACGGTACTTATTGCTGTCGGTGGCTAGGGTAC +
Preference number: 3 (lower is better)
Translates to: LGKWSAGAAGQP*HGTYCCRWLGY
Trigger: GTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTTCCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR CCA 72 bp GCCGGTCAACCTTGGCACGGTACTTATTGCTGTCGGTaGCTAGGGTACGCAGAGATCCACAGAGGGCCTCCA +
Preference number: 3 (lower is better)
Translates to: AGQPWHGTYCCR*LGYAEIHRGPP
Trigger: TGGAGGCCCTCTGTGGATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR GCA 72 bp CAGTCTGATTCACAAGATATCTGCCCGCTTGTCCCTTaGACGACTACGGGCCTTGGTCCGGGCTTTGAAGGC +
Preference number: 3 (lower is better)
Translates to: QSDSQDICPLVP*TTTGLGPGFEG
Trigger: GCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAATCAGACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR TCA 72 bp TGTCCCTTGCACGACTACGGGCCTTGGTCCGGGCTTTaGAGGCTGCAGCATTGTACAGGTGCTTTTCAAAGC +
Preference number: 3 (lower is better)
Translates to: CPLHDYGPWSGL*RLQHCTGAFQS
Trigger: GCTTTGAAAAGCACCTGTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR GCA 72 bp AGCCTTCTCGTTGGCCAGTCTGATTCACAAGATATCTaGCCGCTTGTCCCTTGCACGACTACGGGCCTTGGT +
Preference number: 3 (lower is better)
Translates to: SLLVGQSDSQDI*PLVPCTTTGLG
Trigger: ACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAATCAGACTGGCCAACGAGAAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR CCA 72 bp TCTAGGACCGTTAGCCCTCCAGGACCGGCACACATTTaGTTTTACCTGAGACAGGACAGGAAGAGGCCACAG +
Preference number: 3 (lower is better)
Translates to: SRTVSPPGPAHI*FYLRQDRKRPQ
Trigger: CTGTGGCCTCTTCCTGTCCTGTCTCAGGTAAAACCAAATGTGTGCCGGTCCTGGAGGGCTAACGGTCCTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
3UTR-3UTR CAA 90 bp GCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGTAGGACCGGCACACATTaGGTTTTACCTGAGACAGGA +
Preference number: 3 (lower is better)
Translates to: AHTSIIGSFAYPMPWRPGRTGTH*VLPETG
Trigger: TCCTGTCTCAGGTAAAACCAAATGTGTGCCGGTCCT...ACCTGGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
3UTR-3UTR CAA 90 bp AAGGTCTATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCTTGACCCTCCCACATTaGTCTATTTTTGGTTTCATC +
Preference number: 3 (lower is better)
Translates to: KVYKTGMVLSHHPPCPLVLTLPH*SIFGFI
Trigger: GATGAAACCAAAAATAGACAAATGTGGGAGGGTCAA...GACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATAGACCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
3UTR-3UTR CAA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATAAGTGTCCTGATCCCTaGACCCTCCCACATTTGTCT +
Preference number: 3 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDKCPDP*TLPHLS
Trigger: AGACAAATGTGGGAGGGTCAAGGGATCAGGACACTT...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
3UTR-3UTR CAA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATGGCAGGGACCAGTTCTaGCACTGTCTTCTGTTAAAA +
Preference number: 3 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDGRDQF*HCLLLK
Trigger: TTTTAACAGAAGACAGTGCAAGAACTGGTCCCTGCC...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
ENSMUST00000195746.2
3UTR-3UTR CAA 90 bp AAGTGTCCTGATCCCTTGACCCTCCCACATTTGTCTATTTTTGGTTTCATCATTGGCAGGGACCAGTTCTaGCACTGTCTTCTGTTAAAA +
Preference number: 3 (lower is better)
Translates to: KCPDPLTLPHLSIFGFIIGRDQF*HCLLLK
Trigger: TTTTAACAGAAGACAGTGCAAGAACTGGTCCCTGCC...AATGATGAAACCAAAAATAGACAAATGTGGGAGGGTCAAGGGATCAGGACACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
3UTR TCA 72 bp CATACAAAGGGCTTGAGTCTAAGTGTCCTGATCCCTTaGCCCTCCCACATTTGTCTATTTTTGGTTTCATCA +
Preference number: 3 (lower is better)
Translates to: HTKGLSLSVLIP*PSHICLFLVSS
Trigger: TGATGAAACCAAAAATAGACAAATGTGGGAGGGTCAAGGGATCAGGACACTTAGACTCAAGCCCTTTGTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
3UTR-3UTR CAA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTATTGACCCTCCCACATTaGTCTATTTTTGGTTTCATC +
Preference number: 3 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLLTLPH*SIFGFI
Trigger: GATGAAACCAAAAATAGACAAATGTGGGAGGGTCAA...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
ENSMUST00000195746.2
CDS-3UTR TCA 90 bp AGAGGGCCTCCATGTCTTCATAGACGAAGTCCTCCTCAAGGTCCCGGGCAAGCTCCTCCTCCACGGCGCTaGCCGCCCTTGCGGAGCGCA +
Preference number: 4 (lower is better)
Translates to: RGPPCLHRRSPPQGPGQAPPPRR*PPLRSA
Trigger: TGCGCTCCGCAAGGGCGGTCAGCGCCGTGGAGGAGG...AGCTTGCCCGGGACCTTGAGGAGGACTTCGTCTATGAAGACATGGAGGCCCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR GCA 90 bp TCCCGGGCAAGCTCAAAGAGTAGCGCGATGGCTTCACCAGCAGCAATCCGCAGGGGCGCTGACCGCCCTTaGGGAGCGCATTGCCCTTCC +
Preference number: 4 (lower is better)
Translates to: SRASSKSSAMASPAAIRRGADRP*GAHCPS
Trigger: GGAAGGGCAATGCGCTCCGCAAGGGCGGTCAGCGCC...CCTGCGGATTGCTGCTGGTGAAGCCATCGCGCTACTCTTTGAGCTTGCCCGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR CCA 90 bp TGCCTACCCTATGCCATGGAGGCCAGGTGCCAGACCCCCAAGGGAAGCAGCCCCGCACAGAGAAGGCCATaGAGGCTGGCGGGAACCAGA +
Preference number: 4 (lower is better)
Translates to: CLPYAMEARCQTPKGSSPAQRRP*RLAGTR
Trigger: TCTGGTTCCCGCCAGCCTCCATGGCCTTCTCTGTGC...GGGGCTGCTTCCCTTGGGGGTCTGGCACCTGGCCTCCATGGCATAGGGTAGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp CCGCAGGTTCACACTTTCACTGGACAAGAGCTGGGGCAGCCGGGGCAGCTGCCTAGTCAGCCTGGGTACTaGTCCTGGCACCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: PQVHTFTGQELGQPGQLPSQPGY*SWHLLH
Trigger: GTGGAGGAGGTGCCAGGAGCAGTACCCAGGCTGACT...AGGCAGCTGCCCCGGCTGCCCCAGCTCTTGTCCAGTGAAAGTGTGAACCTGCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR CCA 90 bp GCTCGGAAAATGGAGCGCTGGCGCCGCCGGTCAACCTTGGCACGGTACTTATTGGGCTGGGACAGTCACTaGTGGTGCTCCGGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: ARKMERWRRRSTLARYLLGWDSH*WCSGPH
Trigger: GTGAGGCCCGGAGCACCACCAGTGACTGTCCCAGCC...CAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTTCCGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR CCA 90 bp TGCCTACCCTATGCCATGGAGGCCAGGTGCCAGACCCCCAAGGGAAGCAGCCCCGCCGCCGGTCAACCTTaGCACGGTACTTATTGCTGT +
Preference number: 4 (lower is better)
Translates to: CLPYAMEARCQTPKGSSPAAGQP*HGTYCC
Trigger: ACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGC...GGGGCTGCTTCCCTTGGGGGTCTGGCACCTGGCCTCCATGGCATAGGGTAGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
3UTR CAA 72 bp CGCTGGCGCCGCCGGTCAACCTTGGCACGGTACTTATaGCTGTCGGTGGCTAGGGTACGCAGAGATCCACAG +
Preference number: 4 (lower is better)
Translates to: RWRRRSTLARYL*LSVARVRRDPQ
Trigger: CTGTGGATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR GCA 90 bp TGCCTACCCTATGCCATGGAGGCCAGGTGCCAGACCCCCAAGGGAAGCAGCCCCTGGCACGGTACTTATTaGTGTCGGTGGCTAGGGTAC +
Preference number: 4 (lower is better)
Translates to: CLPYAMEARCQTPKGSSPWHGTY*CRWLGY
Trigger: GTACCCTAGCCACCGACAGCAATAAGTACCGTGCCA...GGGGCTGCTTCCCTTGGGGGTCTGGCACCTGGCCTCCATGGCATAGGGTAGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp CACAGAGGGCCTCCATGTCTTCATAGACGAAGTCCTCCTCAAGGTCCCGGGCAACCTGGGTACTGCTCCTaGCACCTCCTCCACGGCGCT +
Preference number: 4 (lower is better)
Translates to: HRGPPCLHRRSPPQGPGQPGYCS*HLLHGA
Trigger: AGCGCCGTGGAGGAGGTGCCAGGAGCAGTACCCAGG...TTGCCCGGGACCTTGAGGAGGACTTCGTCTATGAAGACATGGAGGCCCTCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR CCA 90 bp CCTCCTCAAGGTCCCGGGCAAGCTCAAAGAGTAGCGCGATGGCTTCACCAGCAGGAGCCAGAGTCAGCCTaGGTACTGCTCCTGGCACCT +
Preference number: 4 (lower is better)
Translates to: PPQGPGQAQRVARWLHQQEPESA*VLLLAP
Trigger: AGGTGCCAGGAGCAGTACCCAGGCTGACTCTGGCTC...CTGCTGGTGAAGCCATCGCGCTACTCTTTGAGCTTGCCCGGGACCTTGAGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR CCA 90 bp GAGGGCCTCCATGTCTTCATAGACGAAGTCCTCCTCAAGGTCCCGGGCAAGCTCTGCTCCGGGCCTCACTaGCCGCTTCATCCTCACTGG +
Preference number: 4 (lower is better)
Translates to: EGLHVFIDEVLLKVPGKLCSGPH*PLHPHW
Trigger: CCAGTGAGGATGAAGCGGCCAGTGAGGCCCGGAGCA...GAGCTTGCCCGGGACCTTGAGGAGGACTTCGTCTATGAAGACATGGAGGCCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
3UTR CAA 72 bp GCTCGGAAAATGGAGCGCTGGCGCCGCCGGTCAACCTaGGCACGGTACTTATTGCTGTCGGTGGCTAGGGTA +
Preference number: 4 (lower is better)
Translates to: ARKMERWRRRST*ARYLLLSVARV
Trigger: TACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTTCCGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR CCA 90 bp CATAGACGAAGTCCTCCTCAAGGTCCCGGGCAAGCTCAAAGAGTAGCGCGATGGTGGGACAGTCACTGGTaGTGCTCCGGGCCTCACTGG +
Preference number: 4 (lower is better)
Translates to: HRRSPPQGPGQAQRVARWWDSHW*CSGPHW
Trigger: CCAGTGAGGCCCGGAGCACCACCAGTGACTGTCCCA...CCATCGCGCTACTCTTTGAGCTTGCCCGGGACCTTGAGGAGGACTTCGTCTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR CCA 90 bp CAGCAATCCGCAGGTTCACACTTTCACTGGACAAGAGCTGGGGCAGCCGGGGCACTCCTTGACGGGTCTTaGCACTCTTGTCAGTCAGGC +
Preference number: 4 (lower is better)
Translates to: QQSAGSHFHWTRAGAAGALLDGS*HSCQSG
Trigger: GCCTGACTGACAAGAGTGCCAAGACCCGTCAAGGAG...TGCCCCGGCTGCCCCAGCTCTTGTCCAGTGAAAGTGTGAACCTGCGGATTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR TCA 90 bp CCTCCATGTCTTCATAGACGAAGTCCTCCTCAAGGTCCCGGGCAAGCTCAAAGACCTCTGTGGTGGCGCTaGGAAGGCTGGGACAGTCAC +
Preference number: 4 (lower is better)
Translates to: PPCLHRRSPPQGPGQAQRPLWWR*EGWDSH
Trigger: GTGACTGTCCCAGCCTTCTCAGCGCCACCACAGAGG...TCTTTGAGCTTGCCCGGGACCTTGAGGAGGACTTCGTCTATGAAGACATGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR GCA 90 bp GTCTATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCCTAGGCAGCCGGGGCAGCTaGCTGTCAAGGATATGGCTG +
Preference number: 4 (lower is better)
Translates to: VYKTGMVLSHHPPCPLVLGSRGS*LSRIWL
Trigger: CAGCCATATCCTTGACAGGCAGCTGCCCCGGCTGCC...TAGGACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp GCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGTTGCTCCGGGCCTCACTaGCCGCTTCATCCTCACTGG +
Preference number: 4 (lower is better)
Translates to: AHTSIIGSFAYPMPWRPGCSGPH*PLHPHW
Trigger: CCAGTGAGGATGAAGCGGCCAGTGAGGCCCGGAGCA...ACCTGGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp AGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTGTGGCTGGGACAGTCACTaGTGGTGCTCCGGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: RGHSHRAECTYKGLESKCGWDSH*WCSGPH
Trigger: GTGAGGCCCGGAGCACCACCAGTGACTGTCCCAGCC...ACACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
3UTR CAA 72 bp ATATCTGCCCGCTTGTCCCTTGCACGACTACGGGCCTaGGTCCGGGCTTTGAAGGCTGCAGCATTGTACAGG +
Preference number: 4 (lower is better)
Translates to: ISARLSLARLRA*VRALKAAALYR
Trigger: CCTGTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
3UTR CAA 72 bp TCGTTGGCCAGTCTGATTCACAAGATATCTGCCCGCTaGTCCCTTGCACGACTACGGGCCTTGGTCCGGGCT +
Preference number: 4 (lower is better)
Translates to: SLASLIHKISAR*SLARLRALVRA
Trigger: AGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAATCAGACTGGCCAACGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
CDS-3UTR GCA 90 bp ACCAGCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGTCAGCCTGGGTACTaGTCCTGGCACCTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: TSTHIHYRQLCLPYAMEASQPGY*SWHLLH
Trigger: GTGGAGGAGGTGCCAGGAGCAGTACCCAGGCTGACT...GGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp AAGGTCTATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCCCGGGCAGTGGGGCTTaGTGTACTGTCACTGAGCAC +
Preference number: 4 (lower is better)
Translates to: KVYKTGMVLSHHPPCPLVPGSGA*CTVTEH
Trigger: GTGCTCAGTGACAGTACAGCAAGCCCCACTGCCCGG...GACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATAGACCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp GAAGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTGATGGTGAGCAGCAATaGCCAGGCCTGCAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: EEATATELSAHTKGLSLSDGEQQ*PGLQGS
Trigger: GCTGCCCTGCAGGCCTGGGCATTGCTGCTCACCATC...ACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp GTCTATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCCTAGAGCCAGAGTCAGCCTaGGTACTGCTCCTGGCACCT +
Preference number: 4 (lower is better)
Translates to: VYKTGMVLSHHPPCPLVLEPESA*VLLLAP
Trigger: AGGTGCCAGGAGCAGTACCCAGGCTGACTCTGGCTC...TAGGACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp GTCTATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCCTACCGCTTCATCCTCACTaGAGCCAGAGTCAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: VYKTGMVLSHHPPCPLVLPLHPH*SQSQPG
Trigger: CCCAGGCTGACTCTGGCTCCAGTGAGGATGAAGCGG...TAGGACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp AGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTGTTGGGACAGTCACTGGTaGTGCTCCGGGCCTCACTGG +
Preference number: 4 (lower is better)
Translates to: RGHSHRAECTYKGLESKCWDSHW*CSGPHW
Trigger: CCAGTGAGGCCCGGAGCACCACCAGTGACTGTCCCA...ACACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp AATGGAGCGCTGGCGCCGCCGGTCAACCTTGGCACGGTACTTATTGCTGTCGGTAGGATATGGCTGATGTaGGTACCAGGACAGATGGTG +
Preference number: 4 (lower is better)
Translates to: NGALAPPVNLGTVLIAVGRIWLM*VPGQMV
Trigger: CACCATCTGTCCTGGTACCCACATCAGCCATATCCT...ACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195725.6
CDS-3UTR TCA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTCCTCCTCCACGGCGCTaGCCGCCCTTGCGGAGCGCA +
Preference number: 4 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSPPPRR*PPLRSA
Trigger: TGCGCTCCGCAAGGGCGGTCAGCGCCGTGGAGGAGG...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp TATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCCTAGGTAGAGCAGAAGCACAATaGAGCCGGGCAGTGGGGCTT +
Preference number: 4 (lower is better)
Translates to: YKTGMVLSHHPPCPLVLGRAEAQ*SRAVGL
Trigger: AAGCCCCACTGCCCGGCTCCATTGTGCTTCTGCTCT...ACCTAGGACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR TCA 90 bp GCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGTCCTTGGTCCGGGCTTTaGAGGCTGCAGCATTGTACA +
Preference number: 4 (lower is better)
Translates to: AHTSIIGSFAYPMPWRPGPWSGL*RLQHCT
Trigger: TGTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGG...ACCTGGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp AGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTGTAATGGAGCCGGGCAGTaGGGCTTGCTGTACTGTCAC +
Preference number: 4 (lower is better)
Translates to: RGHSHRAECTYKGLESKCNGAGQ*GLLYCH
Trigger: GTGACAGTACAGCAAGCCCCACTGCCCGGCTCCATT...ACACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp AAGGTCTATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCGGTTCACACTTTCACTaGACAAGAGCTGGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: KVYKTGMVLSHHPPCPLVGSHFH*TRAGAA
Trigger: GGCTGCCCCAGCTCTTGTCCAGTGAAAGTGTGAACC...GACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATAGACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATGGCGCTGACCGCCCTTaGGGAGCGCATTGCCCTTCC +
Preference number: 4 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDGADRP*GAHCPS
Trigger: GGAAGGGCAATGCGCTCCGCAAGGGCGGTCAGCGCC...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp ACCAGCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCCCGGGCTTTGAAGGCTaGAGCATTGTACAGGTGCTT +
Preference number: 4 (lower is better)
Translates to: TSTHIHYRQLCLPYAMEAPGFEG*SIVQVL
Trigger: AAGCACCTGTACAATGCTGCAGCCTTCAAAGCCCGG...GGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATCCTGGGTACTGCTCCTaGCACCTCCTCCACGGCGCT +
Preference number: 4 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDPGYCS*HLLHGA
Trigger: AGCGCCGTGGAGGAGGTGCCAGGAGCAGTACCCAGG...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp ACCAGCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGATATGGCTGATGTaGGTACCAGGACAGATGGTG +
Preference number: 4 (lower is better)
Translates to: TSTHIHYRQLCLPYAMEARIWLM*VPGQMV
Trigger: CACCATCTGTCCTGGTACCCACATCAGCCATATCCT...GGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGCTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATGCACAGCTCGGAAAATaGAGCGCTGGCGCCGCCGGT +
Preference number: 4 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDAQLGK*SAGAAG
Trigger: ACCGGCGGCGCCAGCGCTCCATTTTCCGAGCTGTGC...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR TCA 90 bp GAAGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTTGTCAAGGATATGGCTaGTGTGGGTACCAGGACAGA +
Preference number: 4 (lower is better)
Translates to: EEATATELSAHTKGLSLSCQGYG*CGYQDR
Trigger: TCTGTCCTGGTACCCACATCAGCCATATCCTTGACA...ACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTAGACAGTCACTGGTGGTaGTCCGGGCCTCACTGGCCG +
Preference number: 4 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLDSHWW*SGPHWP
Trigger: CGGCCAGTGAGGCCCGGAGCACCACCAGTGACTGTC...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp ACCAGCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCGGAGGTGATAGTGTATaGCAGAGCCCAACACATCTT +
Preference number: 4 (lower is better)
Translates to: TSTHIHYRQLCLPYAMEAGGDSV*QSPTHL
Trigger: AAGATGTGTTGGGCTCTGGCATACACTATCACCTCC...GGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGCTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp TCTGATTCACAAGATATCTGCCCGCTTGTCCCTTGCACGACTACGGGCCTTGGTGGAGGTGATAGTGTATaGCAGAGCCCAACACATCTT +
Preference number: 4 (lower is better)
Translates to: SDSQDICPLVPCTTTGLGGGDSV*QSPTHL
Trigger: AAGATGTGTTGGGCTCTGGCATACACTATCACCTCC...ACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGAATCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
CDS-3UTR CCA 90 bp GAAGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTTGCCTGTCAAGGATATaGCTGATGTGGGTACCAGGA +
Preference number: 4 (lower is better)
Translates to: EEATATELSAHTKGLSLSCLSRI*LMWVPG
Trigger: TCCTGGTACCCACATCAGCCATATCCTTGACAGGCA...ACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp AAGTGTCCTGATCCCTTGACCCTCCCACATTTGTCTATTTTTGGTTTCATCATTTCACTGGACAAGAGCTaGGGCAGCCGGGGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: KCPDPLTLPHLSIFGFIISLDKS*GSRGSC
Trigger: GCAGCTGCCCCGGCTGCCCCAGCTCTTGTCCAGTGA...AATGATGAAACCAAAAATAGACAAATGTGGGAGGGTCAAGGGATCAGGACACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTAGCACAGCTCGGAAAATaGAGCGCTGGCGCCGCCGGT +
Preference number: 4 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLAQLGK*SAGAAG
Trigger: ACCGGCGGCGCCAGCGCTCCATTTTCCGAGCTGTGC...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
3UTR CAA 72 bp GCAGCATTGTACAGGTGCTTTTCAAAGCGTGAAATCTaGCAGGCCTTCAGGGCAGCAGCATCCAACACTAGC +
Preference number: 4 (lower is better)
Translates to: AALYRCFSKREI*QAFRAAASNTS
Trigger: GCTAGTGTTGGATGCTGCTGCCCTGAAGGCCTGCAAGATTTCACGCTTTGAAAAGCACCTGTACAATGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
CDS-3UTR TCA 90 bp AAGTGTCCTGATCCCTTGACCCTCCCACATTTGTCTATTTTTGGTTTCATCATTCCTCTGTGGTGGCGCTaGGAAGGCTGGGACAGTCAC +
Preference number: 4 (lower is better)
Translates to: KCPDPLTLPHLSIFGFIIPLWWR*EGWDSH
Trigger: GTGACTGTCCCAGCCTTCTCAGCGCCACCACAGAGG...AATGATGAAACCAAAAATAGACAAATGTGGGAGGGTCAAGGGATCAGGACACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR TCA 90 bp AGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTGTGTGCTTTTCAAAGCGTaGAATCTTGCAGGCCTTCAG +
Preference number: 4 (lower is better)
Translates to: RGHSHRAECTYKGLESKCVLFKA*NLAGLQ
Trigger: CTGAAGGCCTGCAAGATTTCACGCTTTGAAAAGCAC...ACACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTTGCCCGCTTGTCCCTTaGACGACTACGGGCCTTGGT +
Preference number: 4 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSCPLVP*TTTGLG
Trigger: ACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCA...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CCA 90 bp AAGTGTCCTGATCCCTTGACCCTCCCACATTTGTCTATTTTTGGTTTCATCATTACAGCTCCTCGCCCTTaGGTCCAGGGCCCAACTGCA +
Preference number: 4 (lower is better)
Translates to: KCPDPLTLPHLSIFGFIITAPRP*VQGPTA
Trigger: TGCAGTTGGGCCCTGGACCCAAGGGCGAGGAGCTGT...AATGATGAAACCAAAAATAGACAAATGTGGGAGGGTCAAGGGATCAGGACACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR TCA 90 bp AAGTGTCCTGATCCCTTGACCCTCCCACATTTGTCTATTTTTGGTTTCATCATTTACCAGGACAGATGGTaGGCAGCAATGCCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: KCPDPLTLPHLSIFGFIIYQDRW*AAMPRP
Trigger: AGGCCTGGGCATTGCTGCTCACCATCTGTCCTGGTA...AATGATGAAACCAAAAATAGACAAATGTGGGAGGGTCAAGGGATCAGGACACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGCCGCCGGTCAACCTTaGCACGGTACTTATTGCTGT +
Preference number: 4 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSAAGQP*HGTYCC
Trigger: ACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGC...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR TCA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTACCTTGGTCCGGGCTTTaGAGGCTGCAGCATTGTACA +
Preference number: 4 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLPWSGL*RLQHCT
Trigger: TGTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGG...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR GCA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTTGGCACGGTACTTATTaGTGTCGGTGGCTAGGGTAC +
Preference number: 4 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSWHGTY*CRWLGY
Trigger: GTACCCTAGCCACCGACAGCAATAAGTACCGTGCCA...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR GCA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATCAAAGCGTGAAATCTTaGAGGCCTTCAGGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDQSVKS*RPSGQQ
Trigger: CTGCTGCCCTGAAGGCCTGCAAGATTTCACGCTTTG...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR GCA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTCAAAGCGTGAAATCTTaGAGGCCTTCAGGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSQSVKS*RPSGQQ
Trigger: CTGCTGCCCTGAAGGCCTGCAAGATTTCACGCTTTG...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR GCA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATCCGGGCTTTGAAGGCTaGAGCATTGTACAGGTGCTT +
Preference number: 4 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDPGFEG*SIVQVL
Trigger: AAGCACCTGTACAATGCTGCAGCCTTCAAAGCCCGG...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CCA 90 bp AAGTGTCCTGATCCCTTGACCCTCCCACATTTGTCTATTTTTGGTTTCATCATTCTCCTTGACGGGTCTTaGCACTCTTGTCAGTCAGGC +
Preference number: 4 (lower is better)
Translates to: KCPDPLTLPHLSIFGFIILLDGS*HSCQSG
Trigger: GCCTGACTGACAAGAGTGCCAAGACCCGTCAAGGAG...AATGATGAAACCAAAAATAGACAAATGTGGGAGGGTCAAGGGATCAGGACACTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CCA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTACAAAGAGTAGCGCGATaGCTTCACCAGCAGCAATCC +
Preference number: 4 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLQRVAR*LHQQQS
Trigger: GGATTGCTGCTGGTGAAGCCATCGCGCTACTCTTTG...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR GCA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATGGAGGTGATAGTGTATaGCAGAGCCCAACACATCTT +
Preference number: 4 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDGGDSV*QSPTHL
Trigger: AAGATGTGTTGGGCTCTGGCATACACTATCACCTCC...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
ENSMUST00000195746.2
CDS-3UTR TCA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTAGTGCTTTTCAAAGCGTaGAATCTTGCAGGCCTTCAG +
Preference number: 4 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLVLFKA*NLAGLQ
Trigger: CTGAAGGCCTGCAAGATTTCACGCTTTGAAAAGCAC...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS GCA 90 bp CACTGGCCGCTTCATCCTCACTGGAGCCAGAGTCAGCCTGGGTACTaGTCCTGGCACCTCCTCCACGGCGCTGACCGCCCTTGCGGAGCG +
Preference number: 5 (lower is better)
Translates to: HWPLHPHWSQSQPGY*SWHLLHGADRPCGA
Trigger: CGCTCCGCAAGGGCGGTCAGCGCCGTGGAGGAGGTGCCAGGAGCAGTACCCAGGCTGACTCTGGCTCCAGTGAGGATGAAGCGGCCAGTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS TCA 90 bp GTTCGTCCACCGCTTCGCCACCCAGGCAGTCCTCTGTGGTGGCGCTaGGAAGGCTGGGACAGTCACTGGTGGTGCTCCGGGCCTCACTGG +
Preference number: 5 (lower is better)
Translates to: VRPPLRHPGSPLWWR*EGWDSHWWCSGPHW
Trigger: CCAGTGAGGCCCGGAGCACCACCAGTGACTGTCCCAGCCTTCTCAGCGCCACCACAGAGGACTGCCTGGGTGGCGAAGCGGTGGACGAAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS CCA 90 bp CCGCTTCATCCTCACTGGAGCCAGAGTCAGCCTGGGTACTGCTCCTaGCACCTCCTCCACGGCGCTGACCGCCCTTGCGGAGCGCATTGC +
Preference number: 5 (lower is better)
Translates to: PLHPHWSQSQPGYCS*HLLHGADRPCGAHC
Trigger: GCAATGCGCTCCGCAAGGGCGGTCAGCGCCGTGGAGGAGGTGCCAGGAGCAGTACCCAGGCTGACTCTGGCTCCAGTGAGGATGAAGCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS CCA 90 bp GTGAGCAGCAATGCCCAGGCCTGCAGGGCAGCACAGAGAAGGCCATaGAGGCTGGCGGGAACCAGAGACGCCGCAGAGCCACTAGTGCCA +
Preference number: 5 (lower is better)
Translates to: VSSNAQACRAAQRRP*RLAGTRDAAEPLVP
Trigger: TGGCACTAGTGGCTCTGCGGCGTCTCTGGTTCCCGCCAGCCTCCATGGCCTTCTCTGTGCTGCCCTGCAGGCCTGGGCATTGCTGCTCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CCA 90 bp AGTCACTGGTGGTGCTCCGGGCCTCACTGGCCGCTTCATCCTCACTaGAGCCAGAGTCAGCCTGGGTACTGCTCCTGGCACCTCCTCCAC +
Preference number: 5 (lower is better)
Translates to: SHWWCSGPHWPLHPH*SQSQPGYCSWHLLH
Trigger: GTGGAGGAGGTGCCAGGAGCAGTACCCAGGCTGACTCTGGCTCCAGTGAGGATGAAGCGGCCAGTGAGGCCCGGAGCACCACCAGTGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS GCA 90 bp GTGGGGCTTGCTGTACTGTCACTGAGCACCGAGATGAGCAAGGGCTaGAGGCTACGGAACAGCTCCTCGCCCTTGGGTCCAGGGCCCAAC +
Preference number: 5 (lower is better)
Translates to: VGLAVLSLSTEMSKG*RLRNSSSPLGPGPN
Trigger: GTTGGGCCCTGGACCCAAGGGCGAGGAGCTGTTCCGTAGCCTGCAGCCCTTGCTCATCTCGGTGCTCAGTGACAGTACAGCAAGCCCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS GCA 90 bp TGCAGGCTACGGAACAGCTCCTCGCCCTTGGGTCCAGGGCCCAACTaGACACAGAGAATGCCTAGCACAGCAGCAGCCAGAGCCTGTTCT +
Preference number: 5 (lower is better)
Translates to: CRLRNSSSPLGPGPN*TQRMPSTAAARACS
Trigger: AGAACAGGCTCTGGCTGCTGCTGTGCTAGGCATTCTCTGTGTGCAGTTGGGCCCTGGACCCAAGGGCGAGGAGCTGTTCCGTAGCCTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS GCA 90 bp ACCCAAGCCAAGAGCAGAAGCACAATGGAGCCGGGCAGTGGGGCTTaGTGTACTGTCACTGAGCACCGAGATGAGCAAGGGCTGCAGGCT +
Preference number: 5 (lower is better)
Translates to: TQAKSRSTMEPGSGA*CTVTEHRDEQGLQA
Trigger: AGCCTGCAGCCCTTGCTCATCTCGGTGCTCAGTGACAGTACAGCAAGCCCCACTGCCCGGCTCCATTGTGCTTCTGCTCTTGGCTTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CCA 90 bp GCGCGATGGCTTCACCAGCAGCAATCCGCAGGTTCACACTTTCACTaGACAAGAGCTGGGGCAGCCGGGGCAGCTGCCTGTCAAGGATAT +
Preference number: 5 (lower is better)
Translates to: ARWLHQQQSAGSHFH*TRAGAAGAAACQGY
Trigger: ATATCCTTGACAGGCAGCTGCCCCGGCTGCCCCAGCTCTTGTCCAGTGAAAGTGTGAACCTGCGGATTGCTGCTGGTGAAGCCATCGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CCA 90 bp TCACCAGCAGCAATCCGCAGGTTCACACTTTCACTGGACAAGAGCTaGGGCAGCCGGGGCAGCTGCCTGTCAAGGATATGGCTGATGTGG +
Preference number: 5 (lower is better)
Translates to: SPAAIRRFTLSLDKS*GSRGSCLSRIWLMW
Trigger: CCACATCAGCCATATCCTTGACAGGCAGCTGCCCCGGCTGCCCCAGCTCTTGTCCAGTGAAAGTGTGAACCTGCGGATTGCTGCTGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CCA 90 bp TCACCACCCTCAACAAAGTGCAGCACAGCTCGGAAAATGGAGCGCTaGCGCCGCCGGTCAACCTTGGCACGGTACTTATTGCTGTCGGTG +
Preference number: 5 (lower is better)
Translates to: SPPSTKCSTARKMER*RRRSTLARYLLLSV
Trigger: CACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTTCCGAGCTGTGCTGCACTTTGTTGAGGGTGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp AAGGTCTATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCAACAGCTCCTCGCCCTaGGGTCCAGGGCCCAACTGC +
Preference number: 5 (lower is better)
Translates to: KVYKTGMVLSHHPPCPLVNSSSP*GPGPNC
Trigger: GCAGTTGGGCCCTGGACCCAAGGGCGAGGAGCTGTT...GACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATAGACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CCA 90 bp CCTCACATTCACCACCCTCAACAAAGTGCAGCACAGCTCGGAAAATaGAGCGCTGGCGCCGCCGGTCAACCTTGGCACGGTACTTATTGC +
Preference number: 5 (lower is better)
Translates to: PHIHHPQQSAAQLGK*SAGAAGQPWHGTYC
Trigger: GCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTTCCGAGCTGTGCTGCACTTTGTTGAGGGTGGTGAATGTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp TATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCCTAGGTGCACGACTACGGGCCTaGGTCCGGGCTTTGAAGGCT +
Preference number: 5 (lower is better)
Translates to: YKTGMVLSHHPPCPLVLGARLRA*VRALKA
Trigger: AGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGC...ACCTAGGACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CAA 90 bp GTCTATAAAACAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCCTACGCCGCCGGTCAACCTaGGCACGGTACTTATTGCTG +
Preference number: 5 (lower is better)
Translates to: VYKTGMVLSHHPPCPLVLRRRST*ARYLLL
Trigger: CAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCG...TAGGACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGTTTTATAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CAA 90 bp GCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGTTTGGCACGGTACTTATaGCTGTCGGTGGCTAGGGTA +
Preference number: 5 (lower is better)
Translates to: AHTSIIGSFAYPMPWRPGLARYL*LSVARV
Trigger: TACCCTAGCCACCGACAGCAATAAGTACCGTGCCAA...ACCTGGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CAA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTCTGCCCGCTTGTCCCTaGCACGACTACGGGCCTTGG +
Preference number: 5 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSLPACP*HDYGPW
Trigger: CCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAG...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS TCA 90 bp CATTGTTCTGGAGGTGATAGTGTATGCCAGAGCCCAACACATCTTTaGAGGCTGTGTAGATGCGGTGGCGAGCCCAGCTGTCTATGTAGA +
Preference number: 5 (lower is better)
Translates to: HCSGGDSVCQSPTHL*RLCRCGGEPSCLCR
Trigger: TCTACATAGACAGCTGGGCTCGCCACCGCATCTACACAGCCTTCAAAGATGTGTTGGGCTCTGGCATACACTATCACCTCCAGAACAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS TCA 90 bp CAATTAGCTGGAGGTGATAGTGTATGCCAGAGCCCAACACATCTTTaGAGGCTGTGTAGATGCGGTGGCGAGCCCAGCTGTCTATGTAGA +
Preference number: 5 (lower is better)
Translates to: QLAGGDSVCQSPTHL*RLCRCGGEPSCLCR
Trigger: TCTACATAGACAGCTGGGCTCGCCACCGCATCTACACAGCCTTCAAAGATGTGTTGGGCTCTGGCATACACTATCACCTCCAGCTAATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193140.2
CDS-3UTR CAA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATGCACGACTACGGGCCTaGGTCCGGGCTTTGAAGGCT +
Preference number: 5 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDARLRA*VRALKA
Trigger: AGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGC...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTACTGCCCGCTTGTCCCTaGCACGACTACGGGCCTTGG +
Preference number: 5 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLLPACP*HDYGPW
Trigger: CCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAG...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTCGCCGCCGGTCAACCTaGGCACGGTACTTATTGCTG +
Preference number: 5 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSRRRST*ARYLLL
Trigger: CAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCG...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp GAAGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTTTGAAGGCTGCAGCATaGTACAGGTGCTTTTCAAAG +
Preference number: 5 (lower is better)
Translates to: EEATATELSAHTKGLSLSLKAAA*YRCFSK
Trigger: CTTTGAAAAGCACCTGTACAATGCTGCAGCCTTCAA...ACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS-3UTR CAA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGCCTTGGTCCGGGCTTaGAAGGCTGCAGCATTGTAC +
Preference number: 5 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSALVRA*KAAALY
Trigger: GTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGGC...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATGCCTTGGTCCGGGCTTaGAAGGCTGCAGCATTGTAC +
Preference number: 5 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDALVRA*KAAALY
Trigger: GTACAATGCTGCAGCCTTCAAAGCCCGGACCAAGGC...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTTTGGCACGGTACTTATaGCTGTCGGTGGCTAGGGTA +
Preference number: 5 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSLARYL*LSVARV
Trigger: TACCCTAGCCACCGACAGCAATAAGTACCGTGCCAA...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp CTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTGATTCAAAGCGTGAAATCTaGCAGGCCTTCAGGGCAGCA +
Preference number: 5 (lower is better)
Translates to: LLLKIWYGMGSLLVGQSDSKREI*QAFRAA
Trigger: TGCTGCCCTGAAGGCCTGCAAGATTTCACGCTTTGA...ATCAGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp AAAAATAAAGTGACAATCACTGGCAGGGACCAGTTCTTGCACTGTCTTCTGTTATCAAAGCGTGAAATCTaGCAGGCCTTCAGGGCAGCA +
Preference number: 5 (lower is better)
Translates to: KNKVTITGRDQFLHCLLLSKREI*QAFRAA
Trigger: TGCTGCCCTGAAGGCCTGCAAGATTTCACGCTTTGA...TAACAGAAGACAGTGCAAGAACTGGTCCCTGCCAGTGATTGTCACTTTATTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS-3UTR CAA 90 bp TGTCTTCTGTTAAAAATATGGTATGGTATGGGTAGCCTTCTCGTTGGCCAGTCTTTGAAGGCTGCAGCATaGTACAGGTGCTTTTCAAAG +
Preference number: 5 (lower is better)
Translates to: CLLLKIWYGMGSLLVGQSLKAAA*YRCFSK
Trigger: CTTTGAAAAGCACCTGTACAATGCTGCAGCCTTCAA...AGACTGGCCAACGAGAAGGCTACCCATACCATACCATATTTTTAACAGAAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS TCA 72 bp GCCTGGGTACTGCTCCTGGCACCTCCTCCACGGCGCTaGCCGCCCTTGCGGAGCGCATTGCCCTTCCGAGCA +
Preference number: 6 (lower is better)
Translates to: AWVLLLAPPPRR*PPLRSALPFRA
Trigger: TGCTCGGAAGGGCAATGCGCTCCGCAAGGGCGGTCAGCGCCGTGGAGGAGGTGCCAGGAGCAGTACCCAGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS TCA 72 bp CCGCTTCGCCACCCAGGCAGTCCTCTGTGGTGGCGCTaGGAAGGCTGGGACAGTCACTGGTGGTGCTCCGGG +
Preference number: 6 (lower is better)
Translates to: PLRHPGSPLWWR*EGWDSHWWCSG
Trigger: CCCGGAGCACCACCAGTGACTGTCCCAGCCTTCTCAGCGCCACCACAGAGGACTGCCTGGGTGGCGAAGCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS CCA 72 bp CCTCACTGGAGCCAGAGTCAGCCTGGGTACTGCTCCTaGCACCTCCTCCACGGCGCTGACCGCCCTTGCGGA +
Preference number: 6 (lower is better)
Translates to: PHWSQSQPGYCS*HLLHGADRPCG
Trigger: TCCGCAAGGGCGGTCAGCGCCGTGGAGGAGGTGCCAGGAGCAGTACCCAGGCTGACTCTGGCTCCAGTGAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS CCA 72 bp AATGCCCAGGCCTGCAGGGCAGCACAGAGAAGGCCATaGAGGCTGGCGGGAACCAGAGACGCCGCAGAGCCA +
Preference number: 6 (lower is better)
Translates to: NAQACRAAQRRP*RLAGTRDAAEP
Trigger: TGGCTCTGCGGCGTCTCTGGTTCCCGCCAGCCTCCATGGCCTTCTCTGTGCTGCCCTGCAGGCCTGGGCATT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CCA 72 bp GGCTGGGACAGTCACTGGTGGTGCTCCGGGCCTCACTaGCCGCTTCATCCTCACTGGAGCCAGAGTCAGCCT +
Preference number: 6 (lower is better)
Translates to: GWDSHWWCSGPH*PLHPHWSQSQP
Trigger: AGGCTGACTCTGGCTCCAGTGAGGATGAAGCGGCCAGTGAGGCCCGGAGCACCACCAGTGACTGTCCCAGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS GCA 72 bp CGGAACAGCTCCTCGCCCTTGGGTCCAGGGCCCAACTaGACACAGAGAATGCCTAGCACAGCAGCAGCCAGA +
Preference number: 6 (lower is better)
Translates to: RNSSSPLGPGPN*TQRMPSTAAAR
Trigger: TCTGGCTGCTGCTGTGCTAGGCATTCTCTGTGTGCAGTTGGGCCCTGGACCCAAGGGCGAGGAGCTGTTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CAA 90 bp ACCGAGATGAGCAAGGGCTGCAGGCTACGGAACAGCTCCTCGCCCTaGGGTCCAGGGCCCAACTGCACACAGAGAATGCCTAGCACAGCA +
Preference number: 6 (lower is better)
Translates to: TEMSKGCRLRNSSSP*GPGPNCTQRMPSTA
Trigger: TGCTGTGCTAGGCATTCTCTGTGTGCAGTTGGGCCCTGGACCCAAGGGCGAGGAGCTGTTCCGTAGCCTGCAGCCCTTGCTCATCTCGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS GCA 72 bp GCTGTACTGTCACTGAGCACCGAGATGAGCAAGGGCTaGAGGCTACGGAACAGCTCCTCGCCCTTGGGTCCA +
Preference number: 6 (lower is better)
Translates to: AVLSLSTEMSKG*RLRNSSSPLGP
Trigger: TGGACCCAAGGGCGAGGAGCTGTTCCGTAGCCTGCAGCCCTTGCTCATCTCGGTGCTCAGTGACAGTACAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CAA 90 bp TGCAGCACAGCTCGGAAAATGGAGCGCTGGCGCCGCCGGTCAACCTaGGCACGGTACTTATTGCTGTCGGTGGCTAGGGTACGCAGAGAT +
Preference number: 6 (lower is better)
Translates to: CSTARKMERWRRRST*ARYLLLSVARVRRD
Trigger: ATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCGCCAGCGCTCCATTTTCCGAGCTGTGCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195746.2
CDS CCA 72 bp CCAGGCGCAGGCTCTCCAGGGCTCCTTGACGGGTCTTaGCACTCTTGTCAGTCAGGCAGTCCACATAACCTT +
Preference number: 6 (lower is better)
Translates to: PGAGSPGLLDGS*HSCQSGSPHNL
Trigger: AAGGTTATGTGGACTGCCTGACTGACAAGAGTGCCAAGACCCGTCAAGGAGCCCTGGAGAGCCTGCGCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000010192.11
ENSMUST00000195725.6
CDS CCA 72 bp AGCAGGCCAAGCAAGAGACCAGGTCCTGGACGTCGGTaGCAGCCACATAGCAACCCAAGCCAAGAGCAGAAG +
Preference number: 6 (lower is better)
Translates to: SRPSKRPGPGRR*QPHSNPSQEQK
Trigger: CTTCTGCTCTTGGCTTGGGTTGCTATGTGGCTGCCACCGACGTCCAGGACCTGGTCTCTTGCTTGGCCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS CCA 72 bp AGCCGGGGCAGCTGCCTGTCAAGGATATGGCTGATGTaGGTACCAGGACAGATGGTGAGCAGCAATGCCCAG +
Preference number: 6 (lower is better)
Translates to: SRGSCLSRIWLM*VPGQMVSSNAQ
Trigger: CTGGGCATTGCTGCTCACCATCTGTCCTGGTACCCACATCAGCCATATCCTTGACAGGCAGCTGCCCCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS GCA 72 bp AAGAGCAGAAGCACAATGGAGCCGGGCAGTGGGGCTTaGTGTACTGTCACTGAGCACCGAGATGAGCAAGGG +
Preference number: 6 (lower is better)
Translates to: KSRSTMEPGSGA*CTVTEHRDEQG
Trigger: CCCTTGCTCATCTCGGTGCTCAGTGACAGTACAGCAAGCCCCACTGCCCGGCTCCATTGTGCTTCTGCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000010192.11
CDS TCA 72 bp GGAGGTGATAGTGTATGCCAGAGCCCAACACATCTTTaGAGGCTGTGTAGATGCGGTGGCGAGCCCAGCTGT +
Preference number: 6 (lower is better)
Translates to: GGDSVCQSPTHL*RLCRCGGEPSC
Trigger: ACAGCTGGGCTCGCCACCGCATCTACACAGCCTTCAAAGATGTGTTGGGCTCTGGCATACACTATCACCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000010192.11
ENSMUST00000193140.2
ENSMUST00000195746.2