Pregenerated sensors for IFRD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001627Ensembl transcript IDs: ENSMUST00000001672.12, ENSMUST00000164047.2, ENSMUST00000164354.2, ENSMUST00000165027.9, ENSMUST00000169319.8, ENSMUST00000169926.8, ENSMUST00000171530.8
Found 109 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCCCATTGTGCTCCCCAGGGCACAATGAAAGCCACAAACCAAACTaGAGTCCCCCTAGCAGCACAGACCTTCCAGTTTGTTGGGAACAC | + |
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Preference number: 1 (lower is better) Translates to: IPLCSPGHNESHKPN*SPPSSTDLPVCWEH Trigger: GTGTTCCCAACAAACTGGAAGGTCTGTGCTGCTAGGGGGACTTCAGTTTGGTTTGTGGCTTTCATTGTGCCCTGGGGAGCACAATGGGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR TCA 90 bp | TTTCTGTTGGAAAATCCCGTTCCTCCACAGCCCTCAGAACGTCTCTaGAGACAGACCGCTGCTTTCTCTTGTCCACTTTGGCACGGTGTT | + |
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Preference number: 1 (lower is better) Translates to: FLLENPVPPQPSERL*RQTAAFSCPLWHGV Trigger: AACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGGCTGTGGAGGAACGGGATTTTCCAACAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR GCA 90 bp | TCCCGTTCCTCCACAGCCCTCAGAACGTCTCTGAAGACAGACCGCTaGTTTCTCTTGTCCACTTTGGCACGGTGTTTATTTCCATCTGTA | + |
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Preference number: 1 (lower is better) Translates to: SRSSTALRTSLKTDR*FLLSTLARCLFPSV Trigger: TACAGATGGAAATAAACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGGCTGTGGAGGAACGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR TCA 90 bp | GGGCATATGGTCAGTAATAATGTCCACGCGAGAAGCGAGCTGATGTaGAGCACTGTATTTGGAGTGCTGCAAGTAACATTAGTGTCTTTC | + |
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Preference number: 1 (lower is better) Translates to: GHMVSNNVHARSELM*STVFGVLQVTLVSF Trigger: GAAAGACACTAATGTTACTTGCAGCACTCCAAATACAGTGCTTCACATCAGCTCGCTTCTCGCGTGGACATTATTACTGACCATATGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR CCA 90 bp | TCCCTGTACCCTGAAATGCACTCATTGAAGCTATGTGGAGACTCATaGTTATGTTTTATGCACTGCCAAAAGGCTTGCAAGATGCCTCAC | + |
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Preference number: 1 (lower is better) Translates to: SLYPEMHSLKLCGDS*LCFMHCQKACKMPH Trigger: GTGAGGCATCTTGCAAGCCTTTTGGCAGTGCATAAAACATAACCATGAGTCTCCACATAGCTTCAATGAGTGCATTTCAGGGTACAGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR TCA 90 bp | TTGGAAGTTTATGGAAATGCAGCTCCAGCTTTTTCTTCACCTCATTaGTTGGGCATATGGTCAGTAATAATGTCCACGCGAGAAGCGAGC | + |
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Preference number: 1 (lower is better) Translates to: LEVYGNAAPAFSSPH*LGIWSVIMSTREAS Trigger: GCTCGCTTCTCGCGTGGACATTATTACTGACCATATGCCCAATCAATGAGGTGAAGAAAAAGCTGGAGCTGCATTTCCATAAACTTCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR CCA 90 bp | ATTTTGGTACTCAGAAAGTCCATTATCAAACTGGCCACTCAGCACTaGGGAGGTAGAAATAGGATCCACTTCCAGAAAAAGATGATGGAT | + |
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Preference number: 1 (lower is better) Translates to: ILVLRKSIIKLATQH*GGRNRIHFQKKMMD Trigger: ATCCATCATCTTTTTCTGGAAGTGGATCCTATTTCTACCTCCCCAGTGCTGAGTGGCCAGTTTGATAATGGACTTTCTGAGTACCAAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR TCA 90 bp | GTTATGTTCCCAAACATTCAAAAATGTCTCACTCCCTGCCTGCCTTaGCTCATTCTGAACTCTATTTCAGCCATGAACAGCATTTCTTGT | + |
|
Preference number: 1 (lower is better) Translates to: VMFPNIQKCLTPCLP*LILNSISAMNSISC Trigger: ACAAGAAATGCTGTTCATGGCTGAAATAGAGTTCAGAATGAGTCAAGGCAGGCAGGGAGTGAGACATTTTTGAATGTTTGGGAACATAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR CCA 90 bp | TTCAGCCATGAACAGCATTTCTTGTTAACAAAGAAGCCCTTCCAGTaGGGAAAGACCTTTAAATTCAAAGTGAAAGGCAAATGCTTCATC | + |
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Preference number: 1 (lower is better) Translates to: FSHEQHFLLTKKPFQ*GKTFKFKVKGKCFI Trigger: GATGAAGCATTTGCCTTTCACTTTGAATTTAAAGGTCTTTCCCCACTGGAAGGGCTTCTTTGTTAACAAGAAATGCTGTTCATGGCTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR CAA 90 bp | CTCAGAACGTCTCTGAAGACAGACCGCTGCTTTCTCTTGTCCACTTaGGCACGGTGTTTATTTCCATCTGTAGCCAGAGCCCGGAGCATC | + |
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Preference number: 2 (lower is better) Translates to: LRTSLKTDRCFLLST*ARCLFPSVARARSI Trigger: GATGCTCCGGGCTCTGGCTACAGATGGAAATAAACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR CAA 90 bp | TCCACAGCCCTCAGAACGTCTCTGAAGACAGACCGCTGCTTTCTCTaGTCCACTTTGGCACGGTGTTTATTTCCATCTGTAGCCAGAGCC | + |
|
Preference number: 2 (lower is better) Translates to: STALRTSLKTDRCFL*STLARCLFPSVARA Trigger: GGCTCTGGCTACAGATGGAAATAAACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGGCTGTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR-3UTR TCA 90 bp | CTCAGAACGTCTCTGAAGACAGACCGCTGCTTTCTCTTGTCCACTTTGGCACGGAGAAGCGAGCTGATGTaGAGCACTGTATTTGGAGTG | + |
|
Preference number: 2 (lower is better) Translates to: LRTSLKTDRCFLLSTLARRSELM*STVFGV Trigger: CACTCCAAATACAGTGCTTCACATCAGCTCGCTTCT...CCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR-3UTR TCA 90 bp | TTATCAAACTGGCCACTCAGCACTGGGGAGGTAGAAATAGGATCCACTTCCAGACTGAACACAAGGGCTTaGACGCAGCCTTTTGATGAG | + |
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Preference number: 2 (lower is better) Translates to: LSNWPLSTGEVEIGSTSRLNTRA*TQPFDE Trigger: CTCATCAAAAGGCTGCGTTCAAGCCCTTGTGTTCAG...TCTGGAAGTGGATCCTATTTCTACCTCCCCAGTGCTGAGTGGCCAGTTTGATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR GCA 90 bp | CTCAGAACGTCTCTGAAGACAGACCGCTGCTTTCTCTTGTCCACTTTGGCACGGGGAAGTTTATGGAAATaGAGCTCCAGCTTTTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: LRTSLKTDRCFLLSTLARGSLWK*SSSFFF Trigger: GAAGAAAAAGCTGGAGCTGCATTTCCATAAACTTCC...CCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR-3UTR CCA 90 bp | GACCGCTGCTTTCTCTTGTCCACTTTGGCACGGTGTTTATTTCCATCTGTAGCCAGGCTTGGAAGTTTATaGAAATGCAGCTCCAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: DRCFLLSTLARCLFPSVARLGSL*KCSSSF Trigger: AAAGCTGGAGCTGCATTTCCATAAACTTCCAAGCCT...GGCTACAGATGGAAATAAACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR CAA 90 bp | CTCTGCATCAAGGACACTGAGTCCCTGTACCCTGAAATGCACTCATaGAAGCTATGTGGAGACTCATGGTTATGTTTTATGCACTGCCAA | + |
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Preference number: 2 (lower is better) Translates to: LCIKDTESLYPEMHS*KLCGDSWLCFMHCQ Trigger: TTGGCAGTGCATAAAACATAACCATGAGTCTCCACATAGCTTCAATGAGTGCATTTCAGGGTACAGGGACTCAGTGTCCTTGATGCAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR TCA 90 bp | TTATGTTTTATGCACTGCCAAAAGGCTTGCAAGATGCCTCACAAGGGCAACAGAACTCCCTGCCTGCCTTaGCTCATTCTGAACTCTATT | + |
|
Preference number: 2 (lower is better) Translates to: LCFMHCQKACKMPHKGNRTPCLP*LILNSI Trigger: AATAGAGTTCAGAATGAGTCAAGGCAGGCAGGGAGT...TCTGTTGCCCTTGTGAGGCATCTTGCAAGCCTTTTGGCAGTGCATAAAACATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR TCA 90 bp | ATACATGCGCTCAGGACCAAATTTAACAGTTTCTGTTGGAAAATCCCGTTCCTCACGCGAGAAGCGAGCTaGTGTGAAGCACTGTATTTG | + |
|
Preference number: 2 (lower is better) Translates to: IHALRTKFNSFCWKIPFLTREAS*CEALYL Trigger: CAAATACAGTGCTTCACATCAGCTCGCTTCTCGCGT...GAGGAACGGGATTTTCCAACAGAAACTGTTAAATTTGGTCCTGAGCGCATGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR CAA 90 bp | CGCCAGCAGCAATTCTCATGTTTACATCATCACAAGAAAGGAGGCTaGGAAGTTTATGGAAATGCAGCTCCAGCTTTTTCTTCACCTCAT | + |
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Preference number: 2 (lower is better) Translates to: RQQQFSCLHHHKKGG*EVYGNAAPAFSSPH Trigger: ATGAGGTGAAGAAAAAGCTGGAGCTGCATTTCCATAAACTTCCAAGCCTCCTTTCTTGTGATGATGTAAACATGAGAATTGCTGCTGGCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR-3UTR TCA 90 bp | TTATCAAACTGGCCACTCAGCACTGGGGAGGTAGAAATAGGATCCACTTCCAGATTAACCTTCTCATTGTaGAATACCATCTGCTCACTA | + |
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Preference number: 2 (lower is better) Translates to: LSNWPLSTGEVEIGSTSRLTFSL*NTICSL Trigger: TAGTGAGCAGATGGTATTTCACAATGAGAAGGTTAA...TCTGGAAGTGGATCCTATTTCTACCTCCCCAGTGCTGAGTGGCCAGTTTGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR TCA 90 bp | TTAACAAAGAAGCCCTTCCAGTGGGGAAAGACCTTTAAATTCAAAGTGAAAGGCTCAATTCCCAAGATCTaGACACAAGGGCTTGAACGC | + |
|
Preference number: 2 (lower is better) Translates to: LTKKPFQWGKTFKFKVKGSIPKI*TQGLER Trigger: GCGTTCAAGCCCTTGTGTTCAGATCTTGGGAATTGA...GCCTTTCACTTTGAATTTAAAGGTCTTTCCCCACTGGAAGGGCTTCTTTGTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR CCA 90 bp | TTATGTTTTATGCACTGCCAAAAGGCTTGCAAGATGCCTCACAAGGGCAACAGAAAGAAGCCCTTCCAGTaGGGAAAGACCTTTAAATTC | + |
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Preference number: 2 (lower is better) Translates to: LCFMHCQKACKMPHKGNRKKPFQ*GKTFKF Trigger: GAATTTAAAGGTCTTTCCCCACTGGAAGGGCTTCTT...TCTGTTGCCCTTGTGAGGCATCTTGCAAGCCTTTTGGCAGTGCATAAAACATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR CCA 90 bp | CTCAGGACCAAATTTAACAGTTTCTGTTGGAAAATCCCGTTCCTCCACAGCCCTGTGAAGCACTGTATTTaGAGTGCTGCAAGTAACATT | + |
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Preference number: 2 (lower is better) Translates to: LRTKFNSFCWKIPFLHSPVKHCI*SAASNI Trigger: AATGTTACTTGCAGCACTCCAAATACAGTGCTTCAC...AGGGCTGTGGAGGAACGGGATTTTCCAACAGAAACTGTTAAATTTGGTCCTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGCATCAAGCATCACAGGGGGTCCAAGCTCAAATACATTTCGAAGGAATTCATTTAACAGTTTCTGTTaGAAAATCCCGTTCCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: AASSITGGPSSNTFRRNSFNSFC*KIPFLH Trigger: GTGGAGGAACGGGATTTTCCAACAGAAACTGTTAAA...TGAATTCCTTCGAAATGTATTTGAGCTTGGACCCCCTGTGATGCTTGATGCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR CAA 90 bp | CGTTATGTTCCCAAACATTCAAAAATGTCTCACTCCCTGCCTGCCTaGACTCATTCTGAACTCTATTTCAGCCATGAACAGCATTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: RYVPKHSKMSHSLPA*THSELYFSHEQHFL Trigger: CAAGAAATGCTGTTCATGGCTGAAATAGAGTTCAGAATGAGTCAAGGCAGGCAGGGAGTGAGACATTTTTGAATGTTTGGGAACATAACG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR TCA 90 bp | CAGAAGTGCCAAAGATTCGCCAGCAGCAATTCTCATGTTTACATCATCACAAGATTTTCTTCACCTCATTaGTTGGGCATATGGTCAGTA | + |
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Preference number: 2 (lower is better) Translates to: QKCQRFASSNSHVYIITRFSSPH*LGIWSV Trigger: TACTGACCATATGCCCAATCAATGAGGTGAAGAAAA...TCTTGTGATGATGTAAACATGAGAATTGCTGCTGGCGAATCTTTGGCACTTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR-3UTR GCA 90 bp | AATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACATTCACGCCCCAAAACTACAAGTaGCATGTGTGTGTCATAAGA | + |
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Preference number: 2 (lower is better) Translates to: NRIHFQKKMMDPEKLTFTPQNYK*HVCVIR Trigger: TCTTATGACACACACATGGCACTTGTAGTTTTGGGG...CGTGAATGTTAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR CAA 90 bp | GGCTTGCAAGATGCCTCACAAGGGCAACAGAAAACACTTCTGAAATaGGCTAACCTAAGTCCTGGTTACGTATTTCTTAATAATCTATTT | + |
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Preference number: 2 (lower is better) Translates to: GLQDASQGQQKTLLK*ANLSPGYVFLNNLF Trigger: AAATAGATTATTAAGAAATACGTAACCAGGACTTAGGTTAGCCAATTTCAGAAGTGTTTTCTGTTGCCCTTGTGAGGCATCTTGCAAGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR TCA 90 bp | GGAGGTAGAAATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACTCTATTTCAGCCATaGACAGCATTTCTTGTTAAC | + |
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Preference number: 2 (lower is better) Translates to: GGRNRIHFQKKMMDPEKLTLFQP*TAFLVN Trigger: GTTAACAAGAAATGCTGTTCATGGCTGAAATAGAGT...TAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATTTCTACCTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR TCA 72 bp | TGCTCCCCAGGGCACAATGAAAGCCACAAACCAAACTaGAGTCCCCCTAGCAGCACAGACCTTCCAGTTTGT | + |
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Preference number: 3 (lower is better) Translates to: CSPGHNESHKPN*SPPSSTDLPVC Trigger: ACAAACTGGAAGGTCTGTGCTGCTAGGGGGACTTCAGTTTGGTTTGTGGCTTTCATTGTGCCCTGGGGAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR TCA 72 bp | GAAAATCCCGTTCCTCCACAGCCCTCAGAACGTCTCTaGAGACAGACCGCTGCTTTCTCTTGTCCACTTTGG | + |
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Preference number: 3 (lower is better) Translates to: ENPVPPQPSERL*RQTAAFSCPLW Trigger: CCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGGCTGTGGAGGAACGGGATTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR TCA 72 bp | TTCGGGATGAAGCCTGGCAGCCTTTGTGGCATAGGCTaGCATCAATTCCCAAGATCTGAACACAAGGGCTTG | + |
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Preference number: 3 (lower is better) Translates to: FGMKPGSLCGIG*HQFPRSEHKGL Trigger: CAAGCCCTTGTGTTCAGATCTTGGGAATTGATGTCAGCCTATGCCACAAAGGCTGCCAGGCTTCATCCCGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR GCA 72 bp | TCCACAGCCCTCAGAACGTCTCTGAAGACAGACCGCTaGTTTCTCTTGTCCACTTTGGCACGGTGTTTATTT | + |
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Preference number: 3 (lower is better) Translates to: STALRTSLKTDR*FLLSTLARCLF Trigger: AAATAAACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGGCTGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR TCA 72 bp | CCTTTGTGGCATAGGCTGACATCAATTCCCAAGATCTaGACACAAGGGCTTGAACGCAGCCTTTTGATGAGC | + |
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Preference number: 3 (lower is better) Translates to: PLWHRLTSIPKI*TQGLERSLLMS Trigger: GCTCATCAAAAGGCTGCGTTCAAGCCCTTGTGTTCAGATCTTGGGAATTGATGTCAGCCTATGCCACAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR CCA 72 bp | GTGAACTCTGACTTGAACATCAATCCAAAGGATAACTaGGATGTTTCACGAAGCCACTTGCACTCGTGGGCG | + |
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Preference number: 3 (lower is better) Translates to: VNSDLNINPKDN*DVSRSHLHSWA Trigger: CGCCCACGAGTGCAAGTGGCTTCGTGAAACATCCCAGTTATCCTTTGGATTGATGTTCAAGTCAGAGTTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR-3UTR CAA 90 bp | AATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACATTCACGGCACTGCCAAAAGGCTaGCAAGATGCCTCACAAGGG | + |
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Preference number: 3 (lower is better) Translates to: NRIHFQKKMMDPEKLTFTALPKG*QDASQG Trigger: CCCTTGTGAGGCATCTTGCAAGCCTTTTGGCAGTGC...CGTGAATGTTAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR GCA 72 bp | GTCACTCTCCATTCCTCTGGCCAATTCAAACAGAAGTaGCAAAGATTCGCCAGCAGCAATTCTCATGTTTAC | + |
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Preference number: 3 (lower is better) Translates to: VTLHSSGQFKQK*QRFASSNSHVY Trigger: GTAAACATGAGAATTGCTGCTGGCGAATCTTTGGCACTTCTGTTTGAATTGGCCAGAGGAATGGAGAGTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR-3UTR CAA 90 bp | TGCAGCATCAAGCATCACAGGGGGTCCAAGCTCAAATACATTTCGAAGGAATTCCACAAGAAAGGAGGCTaGGAAGTTTATGGAAATGCA | + |
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Preference number: 3 (lower is better) Translates to: CSIKHHRGSKLKYISKEFHKKGG*EVYGNA Trigger: TGCATTTCCATAAACTTCCAAGCCTCCTTTCTTGTG...GAATTCCTTCGAAATGTATTTGAGCTTGGACCCCCTGTGATGCTTGATGCTGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR TCA 72 bp | CCAAACATTCAAAAATGTCTCACTCCCTGCCTGCCTTaGCTCATTCTGAACTCTATTTCAGCCATGAACAGC | + |
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Preference number: 3 (lower is better) Translates to: PNIQKCLTPCLP*LILNSISAMNS Trigger: GCTGTTCATGGCTGAAATAGAGTTCAGAATGAGTCAAGGCAGGCAGGGAGTGAGACATTTTTGAATGTTTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR TCA 72 bp | GTCAGTAATAATGTCCACGCGAGAAGCGAGCTGATGTaGAGCACTGTATTTGGAGTGCTGCAAGTAACATTA | + |
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Preference number: 3 (lower is better) Translates to: VSNNVHARSELM*STVFGVLQVTL Trigger: TAATGTTACTTGCAGCACTCCAAATACAGTGCTTCACATCAGCTCGCTTCTCGCGTGGACATTATTACTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR TCA 72 bp | TATGGAAATGCAGCTCCAGCTTTTTCTTCACCTCATTaGTTGGGCATATGGTCAGTAATAATGTCCACGCGA | + |
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Preference number: 3 (lower is better) Translates to: YGNAAPAFSSPH*LGIWSVIMSTR Trigger: TCGCGTGGACATTATTACTGACCATATGCCCAATCAATGAGGTGAAGAAAAAGCTGGAGCTGCATTTCCATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR TCA 72 bp | CTGACGAGTAGTGGAAACAAGTTAACCTTCTCATTGTaGAATACCATCTGCTCACTACACAGAATACGACCA | + |
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Preference number: 3 (lower is better) Translates to: LTSSGNKLTFSL*NTICSLHRIRP Trigger: TGGTCGTATTCTGTGTAGTGAGCAGATGGTATTTCACAATGAGAAGGTTAACTTGTTTCCACTACTCGTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR TCA 72 bp | CACTTGCACTCGTGGGCGAGAGAAACTAACCTGCATTaGCTGATAAACAATGAACCAAATTGTATACATGTC | + |
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Preference number: 3 (lower is better) Translates to: HLHSWARETNLH*LINNEPNCIHV Trigger: GACATGTATACAATTTGGTTCATTGTTTATCAGTCAATGCAGGTTAGTTTCTCTCGCCCACGAGTGCAAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| 3UTR TCA 72 bp | AAGGAATTCATTTGTCTGCAAGTGGTACTGCATCCCTaGTCCAAGAACCTCTTTAAACGTGTCATAGGTATG | + |
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Preference number: 3 (lower is better) Translates to: KEFICLQVVLHP*SKNLFKRVIGM Trigger: CATACCTATGACACGTTTAAAGAGGTTCTTGGATCAGGGATGCAGTACCACTTGCAGACAAATGAATTCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| 3UTR-3UTR CAA 90 bp | AATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACATTCACGAGACCTTCCAGTTTGTaGGGAACACAGAATAACTTG | + |
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Preference number: 3 (lower is better) Translates to: NRIHFQKKMMDPEKLTFTRPSSL*GTQNNL Trigger: CAAGTTATTCTGTGTTCCCAACAAACTGGAAGGTCT...CGTGAATGTTAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| CDS-3UTR CCA 90 bp | CATCAAGCATCACAGGGGGTCCAAGCTCAAATACATTTCGAAGGAATTCATTTGCCCCCGCCACCGCGGTaGGGAGCGTTCCGCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: HQASQGVQAQIHFEGIHLPPPPR*GAFRFL Trigger: CAAGAAGCGGAACGCTCCCCACCGCGGTGGCGGGGG...CAAATGAATTCCTTCGAAATGTATTTGAGCTTGGACCCCCTGTGATGCTTGATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
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| CDS-3UTR CCA 90 bp | AAATACCATCTGCTCACTACACAGAATACGACCAAACATCACAAACACTTTATTCCCCCGCCACCGCGGTaGGGAGCGTTCCGCTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: KYHLLTTQNTTKHHKHFIPPPPR*GAFRFL Trigger: CAAGAAGCGGAACGCTCCCCACCGCGGTGGCGGGGG...AATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAGTGAGCAGATGGTATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| 3UTR CAA 72 bp | TCTCTGAAGACAGACCGCTGCTTTCTCTTGTCCACTTaGGCACGGTGTTTATTTCCATCTGTAGCCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SLKTDRCFLLST*ARCLFPSVARA Trigger: GGCTCTGGCTACAGATGGAAATAAACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS-3UTR TCA 90 bp | TTATCAAACTGGCCACTCAGCACTGGGGAGGTAGAAATAGGATCCACTTCCAGAAATCCAGGGCCCAGCTaGATACAAAGAACAGATGCG | + |
|
Preference number: 4 (lower is better) Translates to: LSNWPLSTGEVEIGSTSRNPGPS*IQRTDA Trigger: CGCATCTGTTCTTTGTATTCAGCTGGGCCCTGGATT...TCTGGAAGTGGATCCTATTTCTACCTCCCCAGTGCTGAGTGGCCAGTTTGATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | TTATCAAACTGGCCACTCAGCACTGGGGAGGTAGAAATAGGATCCACTTCCAGAAACACCAAAGCAAGTTaGACAAGTCTGCCTAGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: LSNWPLSTGEVEIGSTSRNTKAS*TSLPSL Trigger: CAGGCTAGGCAGACTTGTGCAACTTGCTTTGGTGTT...TCTGGAAGTGGATCCTATTTCTACCTCCCCAGTGCTGAGTGGCCAGTTTGATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | TTATCAAACTGGCCACTCAGCACTGGGGAGGTAGAAATAGGATCCACTTCCAGACTGAAGACAGACCGCTaGTTTCTCTTGTCCACTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LSNWPLSTGEVEIGSTSRLKTDR*FLLSTL Trigger: CAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAG...TCTGGAAGTGGATCCTATTTCTACCTCCCCAGTGCTGAGTGGCCAGTTTGATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| 3UTR CAA 72 bp | CTCAGAACGTCTCTGAAGACAGACCGCTGCTTTCTCTaGTCCACTTTGGCACGGTGTTTATTTCCATCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: LRTSLKTDRCFL*STLARCLFPSV Trigger: TACAGATGGAAATAAACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS-3UTR GCA 90 bp | TTGTCCACTTTGGCACGGTGTTTATTTCCATCTGTAGCCAGAGCCCGGAGCATCCATTGTTTCAATGGATaGATCTTCATCACTGAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: LSTLARCLFPSVARARSIHCFNG*IFITER Trigger: CCTTTCAGTGATGAAGATGCATCCATTGAAACAATG...GATGCTCCGGGCTCTGGCTACAGATGGAAATAAACACCGTGCCAAAGTGGACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS-3UTR GCA 90 bp | TTATGTTTTATGCACTGCCAAAAGGCTTGCAAGATGCCTCACAAGGGCAACAGAAAGACCTTCAAGAGCTaGCTGTCTTGTCTTCGCACT | + |
|
Preference number: 4 (lower is better) Translates to: LCFMHCQKACKMPHKGNRKTFKS*LSCLRT Trigger: AGTGCGAAGACAAGACAGGCAGCTCTTGAAGGTCTT...TCTGTTGCCCTTGTGAGGCATCTTGCAAGCCTTTTGGCAGTGCATAAAACATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR CCA 90 bp | TTAACAAAGAAGCCCTTCCAGTGGGGAAAGACCTTTAAATTCAAAGTGAAAGGCCATCCTCCGCAAAACTaGAAGGATCGCTATAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: LTKKPFQWGKTFKFKVKGHPPQN*KDRYSR Trigger: GCGGCTATAGCGATCCTTCCAGTTTTGCGGAGGATG...GCCTTTCACTTTGAATTTAAAGGTCTTTCCCCACTGGAAGGGCTTCTTTGTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR TCA 90 bp | TTAACAAAGAAGCCCTTCCAGTGGGGAAAGACCTTTAAATTCAAAGTGAAAGGCACGCGAGAAGCGAGCTaGTGTGAAGCACTGTATTTG | + |
|
Preference number: 4 (lower is better) Translates to: LTKKPFQWGKTFKFKVKGTREAS*CEALYL Trigger: CAAATACAGTGCTTCACATCAGCTCGCTTCTCGCGT...GCCTTTCACTTTGAATTTAAAGGTCTTTCCCCACTGGAAGGGCTTCTTTGTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | CAAAGATTCGCCAGCAGCAATTCTCATGTTTACATCATCACAAGAAAGGAGGCTGATCGCTATAGCCGCTaGAGTGGCTCATTGTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: QRFASSNSHVYIITRKEADRYSR*SGSLFQ Trigger: TTGAAACAATGAGCCACTGCAGCGGCTATAGCGATC...AGCCTCCTTTCTTGTGATGATGTAAACATGAGAATTGCTGCTGGCGAATCTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS-3UTR GCA 90 bp | AAGGCAAATGCTTCATCTAGCATGTCCTGCTCTTGGTTCTTCGGGATGAAGCCTTCAGACAGCGCTCAATaGTATCAGTTAAAGTCATTC | + |
|
Preference number: 4 (lower is better) Translates to: KANASSSMSCSWFFGMKPSDSAQ*YQLKSF Trigger: GAATGACTTTAACTGATAGCATTGAGCGCTGTCTGA...AGGCTTCATCCCGAAGAACCAAGAGCAGGACATGCTAGATGAAGCATTTGCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| 3UTR CAA 72 bp | CCCAAACATTCAAAAATGTCTCACTCCCTGCCTGCCTaGACTCATTCTGAACTCTATTTCAGCCATGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: PKHSKMSHSLPA*THSELYFSHEQ Trigger: CTGTTCATGGCTGAAATAGAGTTCAGAATGAGTCAAGGCAGGCAGGGAGTGAGACATTTTTGAATGTTTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR TCA 90 bp | AAATACCATCTGCTCACTACACAGAATACGACCAAACATCACAAACACTTTATTCCCTCAGAACGTCTCTaGAGACAGACCGCTGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: KYHLLTTQNTTKHHKHFIPSERL*RQTAAF Trigger: GAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGG...AATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAGTGAGCAGATGGTATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | AAGGCAAATGCTTCATCTAGCATGTCCTGCTCTTGGTTCTTCGGGATGAAGCCTCATTGTTTCAATGGATaGATCTTCATCACTGAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: KANASSSMSCSWFFGMKPHCFNG*IFITER Trigger: CCTTTCAGTGATGAAGATGCATCCATTGAAACAATG...AGGCTTCATCCCGAAGAACCAAGAGCAGGACATGCTAGATGAAGCATTTGCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | TTATCAAACTGGCCACTCAGCACTGGGGAGGTAGAAATAGGATCCACTTCCAGAAGCCTGGATACTAGCTaGTCCATCACAAATTATTTT | + |
|
Preference number: 4 (lower is better) Translates to: LSNWPLSTGEVEIGSTSRSLDTS*SITNYF Trigger: AAAATAATTTGTGATGGAGCAGCTAGTATCCAGGCT...TCTGGAAGTGGATCCTATTTCTACCTCCCCAGTGCTGAGTGGCCAGTTTGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR CCA 90 bp | GCAATTCTCATGTTTACATCATCACAAGAAAGGAGGCTTGGAAGTTTATGGAAACATCCTCCGCAAAACTaGAAGGATCGCTATAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: AILMFTSSQERRLGSLWKHPPQN*KDRYSR Trigger: GCGGCTATAGCGATCCTTCCAGTTTTGCGGAGGATG...TTTCCATAAACTTCCAAGCCTCCTTTCTTGTGATGATGTAAACATGAGAATTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS-3UTR TCA 90 bp | AATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACATTCACGAGAAGCGAGCTGATGTaGAGCACTGTATTTGGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: NRIHFQKKMMDPEKLTFTRSELM*STVFGV Trigger: CACTCCAAATACAGTGCTTCACATCAGCTCGCTTCT...CGTGAATGTTAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | TCAAAGTACCAACCTTCCACTCAAACCCATTCCCCAAAACTACAAGTGCCATGTGGAAGTTTATGGAAATaGAGCTCCAGCTTTTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SKYQPSTQTHSPKLQVPCGSLWK*SSSFFF Trigger: GAAGAAAAAGCTGGAGCTGCATTTCCATAAACTTCC...ACATGGCACTTGTAGTTTTGGGGAATGGGTTTGAGTGGAAGGTTGGTACTTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | TTAACAAAGAAGCCCTTCCAGTGGGGAAAGACCTTTAAATTCAAAGTGAAAGGCCAATTCAAACAGAAGTaGCAAAGATTCGCCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LTKKPFQWGKTFKFKVKGQFKQK*QRFASS Trigger: GCTGCTGGCGAATCTTTGGCACTTCTGTTTGAATTG...GCCTTTCACTTTGAATTTAAAGGTCTTTCCCCACTGGAAGGGCTTCTTTGTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR TCA 90 bp | AACAGAAGTGCCAAAGATTCGCCAGCAGCAATTCTCATGTTTACATCATCACAAATGCATCTTCATCACTaGAAGGTTGAACAGTCCGAT | + |
|
Preference number: 4 (lower is better) Translates to: NRSAKDSPAAILMFTSSQMHLHH*KVEQSD Trigger: ATCGGACTGTTCAACCTTTCAGTGATGAAGATGCAT...TTGTGATGATGTAAACATGAGAATTGCTGCTGGCGAATCTTTGGCACTTCTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS-3UTR TCA 90 bp | ACCATCTGCTCACTACACAGAATACGACCAAACATCACAAACACTTTATTTGTGGTGGTACTGCATCCCTaGTCCAAGAACCTCTTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: TICSLHRIRPNITNTLFVVVLHP*SKNLFK Trigger: TTTAAAGAGGTTCTTGGATCAGGGATGCAGTACCAC...CACAAATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAGTGAGCAGATGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | AAATACCATCTGCTCACTACACAGAATACGACCAAACATCACAAACACTTTATTGTCTGCAAGTGGTACTaGATCCCTGATCCAAGAACC | + |
|
Preference number: 4 (lower is better) Translates to: KYHLLTTQNTTKHHKHFIVCKWY*IPDPRT Trigger: GGTTCTTGGATCAGGGATGCAGTACCACTTGCAGAC...AATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAGTGAGCAGATGGTATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR CCA 90 bp | TTAACAAAGAAGCCCTTCCAGTGGGGAAAGACCTTTAAATTCAAAGTGAAAGGCAGGCTTGGAAGTTTATaGAAATGCAGCTCCAGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: LTKKPFQWGKTFKFKVKGRLGSL*KCSSSF Trigger: AAAGCTGGAGCTGCATTTCCATAAACTTCCAAGCCT...GCCTTTCACTTTGAATTTAAAGGTCTTTCCCCACTGGAAGGGCTTCTTTGTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR TCA 90 bp | AATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACATTCACGATGCATCTTCATCACTaGAAGGTTGAACAGTCCGAT | + |
|
Preference number: 4 (lower is better) Translates to: NRIHFQKKMMDPEKLTFTMHLHH*KVEQSD Trigger: ATCGGACTGTTCAACCTTTCAGTGATGAAGATGCAT...CGTGAATGTTAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR TCA 90 bp | GGAGGTAGAAATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTATTTTCTTCACCTCATTaGTTGGGCATATGGTCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: GGRNRIHFQKKMMDPEKLFSSPH*LGIWSV Trigger: TACTGACCATATGCCCAATCAATGAGGTGAAGAAAA...TAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATTTCTACCTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | CTACACAGAATACGACCAAACATCACAAACACTTTATTTGTGGTTACCAGTTATGATCGCTATAGCCGCTaGAGTGGCTCATTGTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: LHRIRPNITNTLFVVTSYDRYSR*SGSLFQ Trigger: TTGAAACAATGAGCCACTGCAGCGGCTATAGCGATC...ATAACTGGTAACCACAAATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR GCA 90 bp | AATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACATTCACGAGGAATTCATTTGTCTaGAAGTGGTACTGCATCCCT | + |
|
Preference number: 4 (lower is better) Translates to: NRIHFQKKMMDPEKLTFTRNSFV*KWYCIP Trigger: AGGGATGCAGTACCACTTGCAGACAAATGAATTCCT...CGTGAATGTTAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR CCA 90 bp | TTAACAAAGAAGCCCTTCCAGTGGGGAAAGACCTTTAAATTCAAAGTGAAAGGCTTCTCTTGTCCACTTTaGCACGGTGTTTATTTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LTKKPFQWGKTFKFKVKGFSCPL*HGVYFH Trigger: ATGGAAATAAACACCGTGCCAAAGTGGACAAGAGAA...GCCTTTCACTTTGAATTTAAAGGTCTTTCCCCACTGGAAGGGCTTCTTTGTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR TCA 90 bp | AATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACATTCACGCTCATACAGCACTTTTaGAGACAGTGCATTCTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: NRIHFQKKMMDPEKLTFTLIQHF*RQCILK Trigger: CTTAAGAATGCACTGTCTTCAAAAGTGCTGTATGAG...CGTGAATGTTAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR CCA 90 bp | AATAGGATCCACTTCCAGAAAAAGATGATGGATCCTGAGAAGTTAACATTCACGGTGAAGCACTGTATTTaGAGTGCTGCAAGTAACATT | + |
|
Preference number: 4 (lower is better) Translates to: NRIHFQKKMMDPEKLTFTVKHCI*SAASNI Trigger: AATGTTACTTGCAGCACTCCAAATACAGTGCTTCAC...CGTGAATGTTAACTTCTCAGGATCCATCATCTTTTTCTGGAAGTGGATCCTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR CCA 90 bp | ACCATCTGCTCACTACACAGAATACGACCAAACATCACAAACACTTTATTTGTGTTTAACAGTTTCTGTTaGAAAATCCCGTTCCTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: TICSLHRIRPNITNTLFVFNSFC*KIPFLH Trigger: GTGGAGGAACGGGATTTTCCAACAGAAACTGTTAAA...CACAAATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAGTGAGCAGATGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR CCA 90 bp | AAATACCATCTGCTCACTACACAGAATACGACCAAACATCACAAACACTTTATTTCATTTGTCTGCAAGTaGTACTGCATCCCTGATCCA | + |
|
Preference number: 4 (lower is better) Translates to: KYHLLTTQNTTKHHKHFISFVCK*YCIPDP Trigger: TGGATCAGGGATGCAGTACCACTTGCAGACAAATGA...AATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAGTGAGCAGATGGTATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR TCA 90 bp | CACTGTATTTGGAGTGCTGCAAGTAACATTAGTGTCTTTCTCTTTAAGATAGGATACTCTAAGTCTTCTTaGGTTCCTTCCTCATCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: HCIWSAASNISVFLFKIGYSKSS*VPSSSR Trigger: TCTTGATGAGGAAGGAACTCAAGAAGACTTAGAGTA...TCCTATCTTAAAGAGAAAGACACTAATGTTACTTGCAGCACTCCAAATACAGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS-3UTR GCA 90 bp | AGTGCTGCAAGTAACATTAGTGTCTTTCTCTTTAAGATAGGACTTGGTGAAGATTCAGACAGCGCTCAATaGTATCAGTTAAAGTCATTC | + |
|
Preference number: 4 (lower is better) Translates to: SAASNISVFLFKIGLGEDSDSAQ*YQLKSF Trigger: GAATGACTTTAACTGATAGCATTGAGCGCTGTCTGA...ATCTTCACCAAGTCCTATCTTAAAGAGAAAGACACTAATGTTACTTGCAGCACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS-3UTR TCA 90 bp | AAATACCATCTGCTCACTACACAGAATACGACCAAACATCACAAACACTTTATTTACTCTAAGTCTTCTTaGGTTCCTTCCTCATCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: KYHLLTTQNTTKHHKHFIYSKSS*VPSSSR Trigger: TCTTGATGAGGAAGGAACTCAAGAAGACTTAGAGTA...AATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAGTGAGCAGATGGTATTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS GCA 90 bp | TGCATCTTCATCACTGAAAGGTTGAACAGTCCGATGCGGGCCACCTaGCGTGGCCGCCGACGTCGCTGCCCCGGAGCCGCCGCCACCCCC | + |
|
Preference number: 5 (lower is better) Translates to: CIFITERLNSPMRAT*RGRRRRCPGAAATP Trigger: GGGGGTGGCGGCGGCTCCGGGGCAGCGACGTCGGCGGCCACGGCAGGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
||
| CDS TCA 90 bp | AGCCGCTGCAGTGGCTCATTGTTTCAATGGATGCATCTTCATCACTaGAAGGTTGAACAGTCCGATGCGGGCCACCTGCCGTGGCCGCCG | + |
|
Preference number: 5 (lower is better) Translates to: SRCSGSLFQWMHLHH*KVEQSDAGHLPWPP Trigger: CGGCGGCCACGGCAGGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGAAACAATGAGCCACTGCAGCGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
||
| CDS TCA 90 bp | CAGTGGCTCATTGTTTCAATGGATGCATCTTCATCACTGAAAGGTTaGACAGTCCGATGCGGGCCACCTGCCGTGGCCGCCGACGTCGCT | + |
|
Preference number: 5 (lower is better) Translates to: QWLIVSMDASSSLKG*TVRCGPPAVAADVA Trigger: AGCGACGTCGGCGGCCACGGCAGGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGAAACAATGAGCCACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
||
| CDS GCA 90 bp | GGAAGGATCGCTATAGCCGCTGCAGTGGCTCATTGTTTCAATGGATaGATCTTCATCACTGAAAGGTTGAACAGTCCGATGCGGGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: GRIAIAAAVAHCFNG*IFITERLNSPMRAT Trigger: GGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGAAACAATGAGCCACTGCAGCGGCTATAGCGATCCTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
||
| CDS TCA 90 bp | CATTTCGAAGGAATTCATTTGTCTCCACAGCCCTCAGAACGTCTCTaGAGACAGACCGCTGCTTTCTCTTGTCCACTTTGGCACGGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: HFEGIHLSPQPSERL*RQTAAFSCPLWHGV Trigger: AACACCGTGCCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGGCTGTGGAGACAAATGAATTCCTTCGAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164047.2 |
||
| CDS-3UTR CAA 90 bp | AAGGCAAATGCTTCATCTAGCATGTCCTGCTCTTGGTTCTTCGGGATGAAGCCTCTCTTATCTCGGCATTaGCTTCGAGCTTTTGTTCGA | + |
|
Preference number: 5 (lower is better) Translates to: KANASSSMSCSWFFGMKPLLSRH*LRAFVR Trigger: TCGAACAAAAGCTCGAAGCAAATGCCGAGATAAGAG...AGGCTTCATCCCGAAGAACCAAGAGCAGGACATGCTAGATGAAGCATTTGCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS-3UTR CAA 90 bp | CAAAGATTCGCCAGCAGCAATTCTCATGTTTACATCATCACAAGAAAGGAGGCTCAAGAGCTGCCTGTCTaGTCTTCGCACTCTTATCAA | + |
|
Preference number: 5 (lower is better) Translates to: QRFASSNSHVYIITRKEAQELPV*SSHSYQ Trigger: TTGATAAGAGTGCGAAGACAAGACAGGCAGCTCTTG...AGCCTCCTTTCTTGTGATGATGTAAACATGAGAATTGCTGCTGGCGAATCTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171530.8 |
||
| CDS TCA 90 bp | AGGGTTAGGTCAATTAATCCCTTCAACTTGTACTCTAAGTCTTCTTaGGTTCCTTCCTCATCAAGAACTTCTGGCCCATCCTCCGCAAAA | + |
|
Preference number: 5 (lower is better) Translates to: RVRSINPFNLYSKSS*VPSSSRTSGPSSAK Trigger: TTTTGCGGAGGATGGGCCAGAAGTTCTTGATGAGGAAGGAACTCAAGAAGACTTAGAGTACAAGTTGAAGGGATTAATTGACCTAACCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000001672.12 ENSMUST00000164354.2 ENSMUST00000165027.9 ENSMUST00000169319.8 ENSMUST00000169926.8 ENSMUST00000171530.8 |
||
| CDS-3UTR CAA 90 bp | TCAAAGTACCAACCTTCCACTCAAACCCATTCCCCAAAACTACAAGTGCCATGTCACAAGAAAGGAGGCTaGGAAGTTTATGGAAATGCA | + |
|
Preference number: 5 (lower is better) Translates to: SKYQPSTQTHSPKLQVPCHKKGG*EVYGNA Trigger: TGCATTTCCATAAACTTCCAAGCCTCCTTTCTTGTG...ACATGGCACTTGTAGTTTTGGGGAATGGGTTTGAGTGGAAGGTTGGTACTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
||
| CDS TCA 90 bp | CTGCTCTCTTATCTCGGCATTTGCTTCGAGCTTTTGTTCGAGCTTTaGAAGCTGCAGAGTTATATAAATGCCTTTCAAAACGAGAAATCT | + |
|
Preference number: 5 (lower is better) Translates to: LLSYLGICFELLFEL*KLQSYINAFQNEKS Trigger: AGATTTCTCGTTTTGAAAGGCATTTATATAACTCTGCAGCTTTCAAAGCTCGAACAAAAGCTCGAAGCAAATGCCGAGATAAGAGAGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001672.12 ENSMUST00000164047.2 ENSMUST00000165027.9 |
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| CDS-3UTR CAA 90 bp | CTACACAGAATACGACCAAACATCACAAACACTTTATTTGTGGTTACCAGTTATCAAGAGCTGCCTGTCTaGTCTTCGCACTCTTATCAA | + |
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Preference number: 5 (lower is better) Translates to: LHRIRPNITNTLFVVTSYQELPV*SSHSYQ Trigger: TTGATAAGAGTGCGAAGACAAGACAGGCAGCTCTTG...ATAACTGGTAACCACAAATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| CDS-3UTR CAA 90 bp | CTACACAGAATACGACCAAACATCACAAACACTTTATTTGTGGTTACCAGTTATTTCGAAGGAATTCATTaGTCTGCAAGTGGTACTGCA | + |
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Preference number: 5 (lower is better) Translates to: LHRIRPNITNTLFVVTSYFEGIH*SASGTA Trigger: TGCAGTACCACTTGCAGACAAATGAATTCCTTCGAA...ATAACTGGTAACCACAAATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| CDS-3UTR CAA 90 bp | CTACACAGAATACGACCAAACATCACAAACACTTTATTTGTGGTTACCAGTTATGCTTTTGTTCGAGCTTaGAAAGCTGCAGAGTTATAT | + |
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Preference number: 5 (lower is better) Translates to: LHRIRPNITNTLFVVTSYAFVRA*KAAELY Trigger: ATATAACTCTGCAGCTTTCAAAGCTCGAACAAAAGC...ATAACTGGTAACCACAAATAAAGTGTTTGTGATGTTTGGTCGTATTCTGTGTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001672.12 |
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| CDS CAA 90 bp | GCAGTGGCTCATTGTTTCAATGGATGCATCTTCATCACTGAAAGGTaGAACAGTCCGATGCGGGCCACCTGCCGTGGCCGCCGACGTCGC | + |
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Preference number: 6 (lower is better) Translates to: AVAHCFNGCIFITER*NSPMRATCRGRRRR Trigger: GCGACGTCGGCGGCCACGGCAGGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGAAACAATGAGCCACTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
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| CDS GCA 72 bp | CTCAAATCCAGGGCCCAGCTGAATACAAAGAACAGATaGGACAGCTGCAGCCGCACGCTGCTCGTCACTCTT | + |
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Preference number: 6 (lower is better) Translates to: LKSRAQLNTKNR*DSCSRTLLVTL Trigger: AAGAGTGACGAGCAGCGTGCGGCTGCAGCTGTCGCATCTGTTCTTTGTATTCAGCTGGGCCCTGGATTTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001672.12 ENSMUST00000165027.9 ENSMUST00000169926.8 |
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| CDS TCA 72 bp | ATTGTTTCAATGGATGCATCTTCATCACTGAAAGGTTaGACAGTCCGATGCGGGCCACCTGCCGTGGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: IVSMDASSSLKG*TVRCGPPAVAA Trigger: GGCGGCCACGGCAGGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGAAACAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
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| CDS CCA 72 bp | CCTCATCAAGAACTTCTGGCCCATCCTCCGCAAAACTaGAAGGATCGCTATAGCCGCTGCAGTGGCTCATTG | + |
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Preference number: 6 (lower is better) Translates to: PHQELLAHPPQN*KDRYSRCSGSL Trigger: CAATGAGCCACTGCAGCGGCTATAGCGATCCTTCCAGTTTTGCGGAGGATGGGCCAGAAGTTCTTGATGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
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| CDS CAA 72 bp | CATTGTTTCAATGGATGCATCTTCATCACTGAAAGGTaGAACAGTCCGATGCGGGCCACCTGCCGTGGCCGC | + |
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Preference number: 6 (lower is better) Translates to: HCFNGCIFITER*NSPMRATCRGR Trigger: GCGGCCACGGCAGGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGAAACAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
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| CDS TCA 72 bp | AGTGGCTCATTGTTTCAATGGATGCATCTTCATCACTaGAAGGTTGAACAGTCCGATGCGGGCCACCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: SGSLFQWMHLHH*KVEQSDAGHLP Trigger: CGGCAGGTGGCCCGCATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGAAACAATGAGCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
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| CDS TCA 72 bp | GGAATTCATTTGTCTCCACAGCCCTCAGAACGTCTCTaGAGACAGACCGCTGCTTTCTCTTGTCCACTTTGG | + |
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Preference number: 6 (lower is better) Translates to: GIHLSPQPSERL*RQTAAFSCPLW Trigger: CCAAAGTGGACAAGAGAAAGCAGCGGTCTGTCTTCAGAGACGTTCTGAGGGCTGTGGAGACAAATGAATTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164047.2 |
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| CDS GCA 72 bp | CATCCTCCGCAAAACTGGAAGGATCGCTATAGCCGCTaGAGTGGCTCATTGTTTCAATGGATGCATCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: HPPQNWKDRYSR*SGSLFQWMHLH Trigger: ATGAAGATGCATCCATTGAAACAATGAGCCACTGCAGCGGCTATAGCGATCCTTCCAGTTTTGCGGAGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
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| CDS GCA 72 bp | GCTATAGCCGCTGCAGTGGCTCATTGTTTCAATGGATaGATCTTCATCACTGAAAGGTTGAACAGTCCGATG | + |
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Preference number: 6 (lower is better) Translates to: AIAAAVAHCFNG*IFITERLNSPM Trigger: CATCGGACTGTTCAACCTTTCAGTGATGAAGATGCATCCATTGAAACAATGAGCCACTGCAGCGGCTATAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000171530.8 |
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| CDS CAA 72 bp | AAGAATTCTCCAACATCTGCTCTCTTATCTCGGCATTaGCTTCGAGCTTTTGTTCGAGCTTTGAAAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: KNSPTSALLSRH*LRAFVRALKAA Trigger: TGCAGCTTTCAAAGCTCGAACAAAAGCTCGAAGCAAATGCCGAGATAAGAGAGCAGATGTTGGAGAATTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001672.12 ENSMUST00000164047.2 ENSMUST00000165027.9 |
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| CDS TCA 72 bp | CATTCTTCTCTCGAGAACAAACTCATACAGCACTTTTaGAGACAGTGCATTCTTAAGACCTTCAAGAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: HSSLENKLIQHF*RQCILKTFKSC Trigger: GCAGCTCTTGAAGGTCTTAAGAATGCACTGTCTTCAAAAGTGCTGTATGAGTTTGTTCTCGAGAGAAGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000001672.12 ENSMUST00000164354.2 ENSMUST00000165027.9 ENSMUST00000169319.8 ENSMUST00000169926.8 ENSMUST00000171530.8 |
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| CDS CAA 90 bp | TCTGCTCTCTTATCTCGGCATTTGCTTCGAGCTTTTGTTCGAGCTTaGAAAGCTGCAGAGTTATATAAATGCCTTTCAAAACGAGAAATC | + |
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Preference number: 6 (lower is better) Translates to: SALLSRHLLRAFVRA*KAAELYKCLSKREI Trigger: GATTTCTCGTTTTGAAAGGCATTTATATAACTCTGCAGCTTTCAAAGCTCGAACAAAAGCTCGAAGCAAATGCCGAGATAAGAGAGCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001672.12 ENSMUST00000164047.2 ENSMUST00000165027.9 |
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| CDS TCA 72 bp | GGACTTGGTGAAGATATTTTCGAAGCATTCCAGAGTTaGATACAGCTCAGTGATATCATCTGTGGCAATAAA | + |
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Preference number: 6 (lower is better) Translates to: GLGEDIFEAFQS*IQLSDIICGNK Trigger: TTTATTGCCACAGATGATATCACTGAGCTGTATTCAACTCTGGAATGCTTCGAAAATATCTTCACCAAGTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001672.12 ENSMUST00000165027.9 |
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| CDS CAA 72 bp | TTATCTCGGCATTTGCTTCGAGCTTTTGTTCGAGCTTaGAAAGCTGCAGAGTTATATAAATGCCTTTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: LSRHLLRAFVRA*KAAELYKCLSK Trigger: TTTTGAAAGGCATTTATATAACTCTGCAGCTTTCAAAGCTCGAACAAAAGCTCGAAGCAAATGCCGAGATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001672.12 ENSMUST00000164047.2 ENSMUST00000165027.9 |
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