RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IFNZ (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096854

Ensembl transcript IDs: ENSMUST00000105144.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCACGCCCATTTCGCCTGTTGGTGCTGAATCCGAATCCGTGCGTCTaGTTTGAATGGAGAGAGGGTGCGTGGTGTCACGAGAGCAGAGAG +
Preference number: 1 (lower is better)
Translates to: ARPFRLLVLNPNPCV*FEWREGAWCHESRE
Trigger: CTCTCTGCTCTCGTGACACCACGCACCCTCTCTCCATTCAAAGCAGACGCACGGATTCGGATTCAGCACCAACAGGCGAAATGGGCGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR TCA 90 bp CCCATTTCGCCTGTTGGTGCTGAATCCGAATCCGTGCGTCTGCTTTaGATGGAGAGAGGGTGCGTGGTGTCACGAGAGCAGAGAGATTCC +
Preference number: 1 (lower is better)
Translates to: PISPVGAESESVRLL*MERGCVVSREQRDS
Trigger: GGAATCTCTCTGCTCTCGTGACACCACGCACCCTCTCTCCATTCAAAGCAGACGCACGGATTCGGATTCAGCACCAACAGGCGAAATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR CCA 90 bp CATCTTTCGCAGTGTATGATGTACAGTAGGATGCTTCGGGGCCTCTaGCAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACG +
Preference number: 1 (lower is better)
Translates to: HLSQCMMYSRMLRGL*QGRHKELEVLCRCT
Trigger: CGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTGCCAGAGGCCCCGAAGCATCCTACTGTACATCATACACTGCGAAAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR TCA 90 bp AAATGCAAGAGCACAGGTTTTCTTACAAACATCTTTCGCAGTGTATaGTGTACAGTAGGATGCTTCGGGGCCTCTGGCAGGGAAGACATA +
Preference number: 1 (lower is better)
Translates to: KCKSTGFLTNIFRSV*CTVGCFGASGREDI
Trigger: TATGTCTTCCCTGCCAGAGGCCCCGAAGCATCCTACTGTACATCATACACTGCGAAAGATGTTTGTAAGAAAACCTGTGCTCTTGCATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR-3UTR CCA 90 bp CTCTGGCAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCATTTGCGTCTGCTTTGAATaGAGAGAGGGTGCGTGGTGT +
Preference number: 2 (lower is better)
Translates to: LWQGRHKELEVLCRCTPICVCFE*REGAWC
Trigger: ACACCACGCACCCTCTCTCCATTCAAAGCAGACGCA...AATGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTGCCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR-3UTR TCA 90 bp TTTATTCAGAAGCCACCTCAAATGCAAGAGCACAGGTTTTCTTACAAACATCTTTCCGTGCGTCTGCTTTaGATGGAGAGAGGGTGCGTG +
Preference number: 2 (lower is better)
Translates to: FIQKPPQMQEHRFSYKHLSVRLL*MERGCV
Trigger: CACGCACCCTCTCTCCATTCAAAGCAGACGCACGGA...AAGATGTTTGTAAGAAAACCTGTGCTCTTGCATTTGAGGTGGCTTCTGAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR-3UTR CCA 90 bp AGATCATCAATTTATTCAGAAGCCACCTCAAATGCAAGAGCACAGGTTTTCTTATGGAGAGAGGGTGCGTaGTGTCACGAGAGCAGAGAG +
Preference number: 2 (lower is better)
Translates to: RSSIYSEATSNARAQVFLWREGA*CHESRE
Trigger: CTCTCTGCTCTCGTGACACCACGCACCCTCTCTCCA...TAAGAAAACCTGTGCTCTTGCATTTGAGGTGGCTTCTGAATAAATTGATGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR TCA 72 bp CCTGTTGGTGCTGAATCCGAATCCGTGCGTCTGCTTTaGATGGAGAGAGGGTGCGTGGTGTCACGAGAGCAG +
Preference number: 3 (lower is better)
Translates to: PVGAESESVRLL*MERGCVVSREQ
Trigger: CTGCTCTCGTGACACCACGCACCCTCTCTCCATTCAAAGCAGACGCACGGATTCGGATTCAGCACCAACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR-3UTR CAA 90 bp GCCTCTGGCAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCAATCCGTGCGTCTGCTTaGAATGGAGAGAGGGTGCGT +
Preference number: 3 (lower is better)
Translates to: ASGREDIKNSKFFVDARPIRASA*NGERVR
Trigger: ACGCACCCTCTCTCCATTCAAAGCAGACGCACGGAT...TGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTGCCAGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
3UTR GCA 72 bp CAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATaGACGCCCATTTCGCCTGTTGGTGCTGAATCCGAA +
Preference number: 3 (lower is better)
Translates to: QGRHKELEVLCR*TPISPVGAESE
Trigger: TTCGGATTCAGCACCAACAGGCGAAATGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR TCA 90 bp GCCTCTGGCAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCAGGTGGAGGACCTGCTTaGGGGTCTGGGAGTAGCAAC +
Preference number: 4 (lower is better)
Translates to: ASGREDIKNSKFFVDARPGGGPA*GSGSSN
Trigger: GTTGCTACTCCCAGACCCTCAAGCAGGTCCTCCACC...TGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTGCCAGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR GCA 90 bp CTCTGGCAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCATTCGTGCCAGGCAGCTCTaGTGGCCTCTGTGTCAAAGA +
Preference number: 4 (lower is better)
Translates to: LWQGRHKELEVLCRCTPIRARQL*WPLCQR
Trigger: TCTTTGACACAGAGGCCAGCAGAGCTGCCTGGCACG...AATGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTGCCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR GCA 90 bp TCTGGCAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCATTTGGACAGGACTGGCCCTaGTCTCTTGGCCTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: SGREDIKNSKFFVDARPFGQDWP*SLGLFS
Trigger: GCTGAAGAGGCCAAGAGAGCAGGGCCAGTCCTGTCC...AAATGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTGCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR CCA 90 bp TGTATGATGTACAGTAGGATGCTTCGGGGCCTCTGGCAGGGAAGACATAAAGAAGCCAGGCAGCTCTGCTaGCCTCTGTGTCAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: CMMYSRMLRGLWQGRHKEARQLC*PLCQRG
Trigger: ACCTCTTTGACACAGAGGCCAGCAGAGCTGCCTGGC...TTCTTTATGTCTTCCCTGCCAGAGGCCCCGAAGCATCCTACTGTACATCATACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR CCA 90 bp CTCTGGCAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCATTGGGAGTAGCAACTGGTaGTTTCTCCCAGAGTCATCG +
Preference number: 4 (lower is better)
Translates to: LWQGRHKELEVLCRCTPIGSSNW*FLPESS
Trigger: CGATGACTCTGGGAGAAACCACCAGTTGCTACTCCC...AATGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTGCCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR TCA 90 bp GGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCATTTCGCCTGTTCTTGCAATTGGACTCTaGCGATCTCCCAGGAGCAAG +
Preference number: 4 (lower is better)
Translates to: GRHKELEVLCRCTPISPVLAIGL*RSPRSK
Trigger: CTTGCTCCTGGGAGATCGTCAGAGTCCAATTGCAAG...AACAGGCGAAATGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR CCA 90 bp AGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCATTTCGCCTGTTGGTTCTGTGTCAAAGAGGTaGAGGACCTGCTTGAGGGTC +
Preference number: 4 (lower is better)
Translates to: RHKELEVLCRCTPISPVGSVSKR*RTCLRV
Trigger: GACCCTCAAGCAGGTCCTCCACCTCTTTGACACAGA...ACCAACAGGCGAAATGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR CCA 90 bp AGATCATCAATTTATTCAGAAGCCACCTCAAATGCAAGAGCACAGGTTTTCTTAGGCAGTGGACAGGACTaGCCCTGCTCTCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: RSSIYSEATSNARAQVFLGSGQD*PCSLGL
Trigger: GAGGCCAAGAGAGCAGGGCCAGTCCTGTCCACTGCC...TAAGAAAACCTGTGCTCTTGCATTTGAGGTGGCTTCTGAATAAATTGATGATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR GCA 90 bp TATTCAGAAGCCACCTCAAATGCAAGAGCACAGGTTTTCTTACAAACATCTTTCAACCTCGGAAGTAGGTaGGGATGGCCAGGGCAAAAG +
Preference number: 4 (lower is better)
Translates to: YSEATSNARAQVFLQTSFNLGSR*GWPGQK
Trigger: CTTTTGCCCTGGCCATCCGCACCTACTTCCGAGGTT...GAAAGATGTTTGTAAGAAAACCTGTGCTCTTGCATTTGAGGTGGCTTCTGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR CCA 90 bp TATTCAGAAGCCACCTCAAATGCAAGAGCACAGGTTTTCTTACAAACATCTTTCCAGAATCAAGTGAGCTaGCTGGGCTGCAGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: YSEATSNARAQVFLQTSFQNQVS*LGCSSA
Trigger: TGCTGAGCTGCAGCCCAGCCAGCTCACTTGATTCTG...GAAAGATGTTTGTAAGAAAACCTGTGCTCTTGCATTTGAGGTGGCTTCTGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR TCA 90 bp TTTATTCAGAAGCCACCTCAAATGCAAGAGCACAGGTTTTCTTACAAACATCTTTTTACCAGAATCAAGTaGGCTGGCTGGGCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: FIQKPPQMQEHRFSYKHLFTRIK*AGWAAA
Trigger: AGCTGCAGCCCAGCCAGCTCACTTGATTCTGGTAAA...AAGATGTTTGTAAGAAAACCTGTGCTCTTGCATTTGAGGTGGCTTCTGAATAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR GCA 90 bp TTTATTCAGAAGCCACCTCAAATGCAAGAGCACAGGTTTTCTTACAAACATCTTGGAGCAAGCGCTGTATaGCTTTGCCTTCAGATAGCG +
Preference number: 4 (lower is better)
Translates to: FIQKPPQMQEHRFSYKHLGASAV*LCLQIA
Trigger: CGCTATCTGAAGGCAAAGGCATACAGCGCTTGCTCC...AAGATGTTTGTAAGAAAACCTGTGCTCTTGCATTTGAGGTGGCTTCTGAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS GCA 90 bp GGCAGTGGACAGGACTGGCCCTGCTCTCTTGGCCTCTTCAGCACTTaGAGCTCACGCCACAGGCTAGATAGTAGCTGGTCCAGCGCCCTC +
Preference number: 5 (lower is better)
Translates to: GSGQDWPCSLGLFST*SSRHRLDSSWSSAL
Trigger: GAGGGCGCTGGACCAGCTACTATCTAGCCTGTGGCGTGAGCTGCAAGTGCTGAAGAGGCCAAGAGAGCAGGGCCAGTCCTGTCCACTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS TCA 90 bp TTCGCTGCGCTCCAGGTGCAGGCTCCCAGATTTACCAGAATCAAGTaGGCTGGCTGGGCTGCAGCTCAGCATCACCCCTCCCACCAGGAA +
Preference number: 5 (lower is better)
Translates to: FAALQVQAPRFTRIK*AGWAAAQHHPSHQE
Trigger: TTCCTGGTGGGAGGGGTGATGCTGAGCTGCAGCCCAGCCAGCTCACTTGATTCTGGTAAATCTGGGAGCCTGCACCTGGAGCGCAGCGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CCA 90 bp GAAGAAACCTCGGAAGTAGGTGCGGATGGCCAGGGCAAAAGGCAGTaGACAGGACTGGCCCTGCTCTCTTGGCCTCTTCAGCACTTGCAG +
Preference number: 5 (lower is better)
Translates to: EETSEVGADGQGKRQ*TGLALLSWPLQHLQ
Trigger: CTGCAAGTGCTGAAGAGGCCAAGAGAGCAGGGCCAGTCCTGTCCACTGCCTTTTGCCCTGGCCATCCGCACCTACTTCCGAGGTTTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR CAA 90 bp GCCTCTGGCAGGGAAGACATAAAGAACTCGAAGTTCTTTGTCGATGCACGCCCATGGCCTCTTCAGCACTaGCAGCTCACGCCACAGGCT +
Preference number: 5 (lower is better)
Translates to: ASGREDIKNSKFFVDARPWPLQH*QLTPQA
Trigger: AGCCTGTGGCGTGAGCTGCAAGTGCTGAAGAGGCCA...TGGGCGTGCATCGACAAAGAACTTCGAGTTCTTTATGTCTTCCCTGCCAGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS-3UTR CAA 90 bp TCTTACAAACATCTTTCGCAGTGTATGATGTACAGTAGGATGCTTCGGGGCCTCACTGGCCCTGCTCTCTaGGCCTCTTCAGCACTTGCA +
Preference number: 5 (lower is better)
Translates to: SYKHLSQCMMYSRMLRGLTGPAL*ASSALA
Trigger: TGCAAGTGCTGAAGAGGCCAAGAGAGCAGGGCCAGT...GAGGCCCCGAAGCATCCTACTGTACATCATACACTGCGAAAGATGTTTGTAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CCA 72 bp AGCACTTGCAGCTCACGCCACAGGCTAGATAGTAGCTaGTCCAGCGCCCTCTCGTGCCAGGCAGCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: STCSSRHRLDSS*SSALSCQAALL
Trigger: CAGCAGAGCTGCCTGGCACGAGAGGGCGCTGGACCAGCTACTATCTAGCCTGTGGCGTGAGCTGCAAGTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CCA 72 bp GTGCGGATGGCCAGGGCAAAAGGCAGTGGACAGGACTaGCCCTGCTCTCTTGGCCTCTTCAGCACTTGCAGC +
Preference number: 6 (lower is better)
Translates to: VRMARAKGSGQD*PCSLGLFSTCS
Trigger: GCTGCAAGTGCTGAAGAGGCCAAGAGAGCAGGGCCAGTCCTGTCCACTGCCTTTTGCCCTGGCCATCCGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS GCA 72 bp ATGGCCAGGGCAAAAGGCAGTGGACAGGACTGGCCCTaGTCTCTTGGCCTCTTCAGCACTTGCAGCTCACGC +
Preference number: 6 (lower is better)
Translates to: MARAKGSGQDWP*SLGLFSTCSSR
Trigger: GCGTGAGCTGCAAGTGCTGAAGAGGCCAAGAGAGCAGGGCCAGTCCTGTCCACTGCCTTTTGCCCTGGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CCA 72 bp TCGGAAGTAGGTGCGGATGGCCAGGGCAAAAGGCAGTaGACAGGACTGGCCCTGCTCTCTTGGCCTCTTCAG +
Preference number: 6 (lower is better)
Translates to: SEVGADGQGKRQ*TGLALLSWPLQ
Trigger: CTGAAGAGGCCAAGAGAGCAGGGCCAGTCCTGTCCACTGCCTTTTGCCCTGGCCATCCGCACCTACTTCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CCA 72 bp GGTGCAGGCTCCCAGATTTACCAGAATCAAGTGAGCTaGCTGGGCTGCAGCTCAGCATCACCCCTCCCACCA +
Preference number: 6 (lower is better)
Translates to: GAGSQIYQNQVS*LGCSSASPLPP
Trigger: TGGTGGGAGGGGTGATGCTGAGCTGCAGCCCAGCCAGCTCACTTGATTCTGGTAAATCTGGGAGCCTGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CCA 72 bp TCAGATAGCGGAAGAAACCTCGGAAGTAGGTGCGGATaGCCAGGGCAAAAGGCAGTGGACAGGACTGGCCCT +
Preference number: 6 (lower is better)
Translates to: SDSGRNLGSRCG*PGQKAVDRTGP
Trigger: AGGGCCAGTCCTGTCCACTGCCTTTTGCCCTGGCCATCCGCACCTACTTCCGAGGTTTCTTCCGCTATCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS GCA 72 bp CTTCTCGCAGACAGTGGGAACGCTGGAAGGTCCACTTaGAATTGGACTCTGACGATCTCCCAGGAGCAAGCG +
Preference number: 6 (lower is better)
Translates to: LLADSGNAGRST*NWTLTISQEQA
Trigger: CGCTTGCTCCTGGGAGATCGTCAGAGTCCAATTGCAAGTGGACCTTCCAGCGTTCCCACTGTCTGCGAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CCA 72 bp CATCGGTGTGATGTTAGTTCCTTCCTTCCAGGGACATaGGAAATCGGTCCTGTCCCGCAGGCACTGGTGACC +
Preference number: 6 (lower is better)
Translates to: HRCDVSSFLPGT*EIGPVPQALVT
Trigger: GGTCACCAGTGCCTGCGGGACAGGACCGATTTCCCATGTCCCTGGAAGGAAGGAACTAACATCACACCGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CAA 72 bp CGCAGACAGTGGGAACGCTGGAAGGTCCACTTGCAATaGGACTCTGACGATCTCCCAGGAGCAAGCGCTGTA +
Preference number: 6 (lower is better)
Translates to: RRQWERWKVHLQ*DSDDLPGASAV
Trigger: TACAGCGCTTGCTCCTGGGAGATCGTCAGAGTCCAATTGCAAGTGGACCTTCCAGCGTTCCCACTGTCTGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS GCA 72 bp TTGCCTTCAGATAGCGGAAGAAACCTCGGAAGTAGGTaGGGATGGCCAGGGCAAAAGGCAGTGGACAGGACT +
Preference number: 6 (lower is better)
Translates to: LPSDSGRNLGSR*GWPGQKAVDRT
Trigger: AGTCCTGTCCACTGCCTTTTGCCCTGGCCATCCGCACCTACTTCCGAGGTTTCTTCCGCTATCTGAAGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CCA 72 bp GCAGACAGTGGGAACGCTGGAAGGTCCACTTGCAATTaGACTCTGACGATCTCCCAGGAGCAAGCGCTGTAT +
Preference number: 6 (lower is better)
Translates to: ADSGNAGRSTCN*TLTISQEQALY
Trigger: ATACAGCGCTTGCTCCTGGGAGATCGTCAGAGTCCAATTGCAAGTGGACCTTCCAGCGTTCCCACTGTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS CAA 72 bp TCTTCTCGCAGACAGTGGGAACGCTGGAAGGTCCACTaGCAATTGGACTCTGACGATCTCCCAGGAGCAAGC +
Preference number: 6 (lower is better)
Translates to: SSRRQWERWKVH*QLDSDDLPGAS
Trigger: GCTTGCTCCTGGGAGATCGTCAGAGTCCAATTGCAAGTGGACCTTCCAGCGTTCCCACTGTCTGCGAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2
CDS GCA 72 bp TCCCAGATTTACCAGAATCAAGTGAGCTGGCTGGGCTaGAGCTCAGCATCACCCCTCCCACCAGGAATAGAT +
Preference number: 6 (lower is better)
Translates to: SQIYQNQVSWLG*SSASPLPPGID
Trigger: ATCTATTCCTGGTGGGAGGGGTGATGCTGAGCTGCAGCCCAGCCAGCTCACTTGATTCTGGTAAATCTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105144.2