Pregenerated sensors for IFNK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042993Ensembl transcript IDs: ENSMUST00000058595.7
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTTAAGACTTTCTTTGACTGCACTGCCTTGAACCCTGAACTTGAAAAGTCTTGCAGAATAAAGCGTTCTTaGAGACATTTGAGCAATTGC | + |
|
Preference number: 2 (lower is better) Translates to: LKTFFDCTALNPELEKSCRIKRS*RHLSNC Trigger: GCAATTGCTCAAATGTCTCCAAGAACGCTTTATTCT...GCAAGACTTTTCAAGTTCAGGGTTCAAGGCAGTGCAGTCAAAGAAAGTCTTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| 3UTR GCA 72 bp | ACTGAAGTTCATCTTTTGCTTAAGACTTTCTTTGACTaGACTGCCTTGAACCCTGAACTTGAAAAGTCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: TEVHLLLKTFFD*TALNPELEKSC Trigger: GCAAGACTTTTCAAGTTCAGGGTTCAAGGCAGTGCAGTCAAAGAAAGTCTTAAGCAAAAGATGAACTTCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS-3UTR TCA 90 bp | TTGCTTAAGACTTTCTTTGACTGCACTGCCTTGAACCCTGAACTTGAAAAGTCTTTCTTATTTCCACTGTaGCAATCTTCCATGCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: LLKTFFDCTALNPELEKSFLFPL*QSSMHR Trigger: TCTGTGCATGGAAGATTGTCACAGTGGAAATAAGAA...AGACTTTTCAAGTTCAGGGTTCAAGGCAGTGCAGTCAAAGAAAGTCTTAAGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS-3UTR GCA 90 bp | CTTAAGACTTTCTTTGACTGCACTGCCTTGAACCCTGAACTTGAAAAGTCTTGCTCACATTTTCCAAGATaGTATCATCCAGGTAAACAC | + |
|
Preference number: 4 (lower is better) Translates to: LKTFFDCTALNPELEKSCSHFPR*YHPGKH Trigger: GTGTTTACCTGGATGATAGCATCTTGGAAAATGTGA...GCAAGACTTTTCAAGTTCAGGGTTCAAGGCAGTGCAGTCAAAGAAAGTCTTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS-3UTR GCA 90 bp | AACTTGAAAAGTCTTGCATCTGAAGGTAGCATTAGCAGCATCCTGGTAATGGCTATCTCCCTTTTCATATaGTGGATGTATGGCAAAATC | + |
|
Preference number: 4 (lower is better) Translates to: NLKSLASEGSISSILVMAISLFI*WMYGKI Trigger: GATTTTGCCATACATCCAGCATATGAAAAGGGAGAT...AGCCATTACCAGGATGCTGCTAATGCTACCTTCAGATGCAAGACTTTTCAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS-3UTR GCA 90 bp | CATCTTTTGCTTAAGACTTTCTTTGACTGCACTGCCTTGAACCCTGAACTTGAATGTGACAATCTTCCATaGACAGAAACTGTATTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: HLLLKTFFDCTALNPELECDNLP*TETVFL Trigger: AAGAAATACAGTTTCTGTGCATGGAAGATTGTCACA...TTCAAGTTCAGGGTTCAAGGCAGTGCAGTCAAAGAAAGTCTTAAGCAAAAGATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS-3UTR CCA 90 bp | CAGCATCCTGGTAATGGCTTTAGAATAAAGCGTTCTTGGAGACATTTGAGCAATCATATGCTGGATGTATaGCAAAATCTCTTTAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: QHPGNGFRIKRSWRHLSNHMLDV*QNLFRK Trigger: TTTCCTAAAGAGATTTTGCCATACATCCAGCATATG...ATTGCTCAAATGTCTCCAAGAACGCTTTATTCTAAAGCCATTACCAGGATGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS-3UTR CCA 90 bp | AACTTTTCCACTGAAGTTCATCTTTTGCTTAAGACTTTCTTTGACTGCACTGCCTCCCTTTTCATATGCTaGATGTATGGCAAAATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: NFSTEVHLLLKTFFDCTASLFIC*MYGKIS Trigger: AGAGATTTTGCCATACATCCAGCATATGAAAAGGGA...GGCAGTGCAGTCAAAGAAAGTCTTAAGCAAAAGATGAACTTCAGTGGAAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS GCA 90 bp | GAAAGCCGGTCATGGTACTGCCCAGAAGTTTCACATTTTCCAAGATaGTATCATCCAGGTAAACACAGTTCAGAGATTGGATGGGCGGAA | + |
|
Preference number: 5 (lower is better) Translates to: ESRSWYCPEVSHFPR*YHPGKHSSEIGWAE Trigger: TTCCGCCCATCCAATCTCTGAACTGTGTTTACCTGGATGATAGCATCTTGGAAAATGTGAAACTTCTGGGCAGTACCATGACCGGCTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS CCA 72 bp | TGCTATCATCCAGGTAAACACAGTTCAGAGATTGGATaGGCGGAATGTATAGAGCCACAAGGGCCACCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: CYHPGKHSSEIG*AECIEPQGPPA Trigger: GGCTGGTGGCCCTTGTGGCTCTATACATTCCGCCCATCCAATCTCTGAACTGTGTTTACCTGGATGATAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||
| CDS GCA 72 bp | CTTTTAGACATCTTAAGGGAAAGCCGGTCATGGTACTaGCCAGAAGTTTCACATTTTCCAAGATGCTATCAT | + |
|
Preference number: 6 (lower is better) Translates to: LLDILRESRSWY*PEVSHFPRCYH Trigger: ATGATAGCATCTTGGAAAATGTGAAACTTCTGGGCAGTACCATGACCGGCTTTCCCTTAAGATGTCTAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058595.7 |
||