Pregenerated sensors for IFNGR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022965Ensembl transcript IDs: ENSMUST00000023687.9, ENSMUST00000127644.2
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGCTCCATGCTCCCTGCTGGCATTCTTGTCACCTTTGGCCCATTTaGCTGCCCTTTGGGGCTCAACCACAGCCACCTCCTGCCTCAGGA | + |
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Preference number: 1 (lower is better) Translates to: GLHAPCWHSCHLWPI*LPFGAQPQPPPASG Trigger: TCCTGAGGCAGGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGCATGGAGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 90 bp | TCCCTGCTGGCATTCTTGTCACCTTTGGCCCATTTGGCTGCCCTTTaGGGCTCAACCACAGCCACCTCCTGCCTCAGGACAACAGACCAG | + |
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Preference number: 1 (lower is better) Translates to: SLLAFLSPLAHLAAL*GSTTATSCLRTTDQ Trigger: CTGGTCTGTTGTCCTGAGGCAGGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 90 bp | TCTGAGCTTGGGCTCCATGCTCCCTGCTGGCATTCTTGTCACCTTTaGCCCATTTGGCTGCCCTTTGGGGCTCAACCACAGCCACCTCCT | + |
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Preference number: 1 (lower is better) Translates to: SELGLHAPCWHSCHL*PIWLPFGAQPQPPP Trigger: AGGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGCATGGAGCCCAAGCTCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR GCA 90 bp | CCACTTCTAGGAAGTGTTTGCTCTGAGCTTGGGCTCCATGCTCCCTaGTGGCATTCTTGTCACCTTTGGCCCATTTGGCTGCCCTTTGGG | + |
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Preference number: 1 (lower is better) Translates to: PLLGSVCSELGLHAP*WHSCHLWPIWLPFG Trigger: CCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGCATGGAGCCCAAGCTCAGAGCAAACACTTCCTAGAAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 90 bp | CTTCTAGGAAGTGTTTGCTCTGAGCTTGGGCTCCATGCTCCCTGCTaGCATTCTTGTCACCTTTGGCCCATTTGGCTGCCCTTTGGGGCT | + |
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Preference number: 1 (lower is better) Translates to: LLGSVCSELGLHAPC*HSCHLWPIWLPFGA Trigger: AGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGCATGGAGCCCAAGCTCAGAGCAAACACTTCCTAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 90 bp | GATGTTTTTCGGAGGTCCAACAGTAACATTCTCATAGTGTTGAAATaGCTCCAGCCCCACCCACTTGGAAGTGAGGTTCCCTCGCTTGGC | + |
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Preference number: 1 (lower is better) Translates to: DVFRRSNSNILIVLK*LQPHPLGSEVPSLG Trigger: GCCAAGCGAGGGAACCTCACTTCCAAGTGGGTGGGGCTGGAGCCATTTCAACACTATGAGAATGTTACTGTTGGACCTCCGAAAAACATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
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| 3UTR TCA 90 bp | TGGGCCAGTGTGACTCATTTGTGGACTGTGTTGTCCCCATGGCTTTaGAGAACTAAGGGAAGAGACAGTAGGAACATCTTTCTGGCTGAA | + |
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Preference number: 1 (lower is better) Translates to: WASVTHLWTVLSPWL*RTKGRDSRNIFLAE Trigger: TTCAGCCAGAAAGATGTTCCTACTGTCTCTTCCCTTAGTTCTTCAAAGCCATGGGGACAACACAGTCCACAAATGAGTCACACTGGCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR GCA 90 bp | TGTTTCAAGGTTACTCTGCTTGTCACCTTAGATGTACGGTCTTTGTaGTTTTTGCCTTTAAAAATTCTGTATCCTCCTGCACTTGGCACC | + |
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Preference number: 1 (lower is better) Translates to: CFKVTLLVTLDVRSL*FLPLKILYPPALGT Trigger: GGTGCCAAGTGCAGGAGGATACAGAATTTTTAAAGGCAAAAAGCACAAAGACCGTACATCTAAGGTGACAAGCAGAGTAACCTTGAAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 90 bp | AGGTCCACCCAGGCCATAAATAAAACCGGACTTCAGACTTTTAATTaGCTAAACATTGTTCTCAATAATGACCTGAGTTGTTATGGTAAT | + |
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Preference number: 1 (lower is better) Translates to: RSTQAINKTGLQTFN*LNIVLNNDLSCYGN Trigger: ATTACCATAACAACTCAGGTCATTATTGAGAACAATGTTTAGCCAATTAAAAGTCTGAAGTCCGGTTTTATTTATGGCCTGGGTGGACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CAA 90 bp | TGGGCTCCATGCTCCCTGCTGGCATTCTTGTCACCTTTGGCCCATTaGGCTGCCCTTTGGGGCTCAACCACAGCCACCTCCTGCCTCAGG | + |
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Preference number: 2 (lower is better) Translates to: WAPCSLLAFLSPLAH*AALWGSTTATSCLR Trigger: CCTGAGGCAGGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGCATGGAGCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | AACCACAGCCACCTCCTGCCTCAGGACAACAGACCAGTCTCACCCCCAAAACAGCCAGTCCTGGGGCCCTaGGGATCTCTCTCGGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: NHSHLLPQDNRPVSPPKQPVLGP*GSLSGA Trigger: TGCACCCGAGAGAGATCCCCAGGGCCCCAGGACTGG...CTGTTTTGGGGGTGAGACTGGTCTGTTGTCCTGAGGCAGGAGGTGGCTGTGGTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | ACGTGGGCGCCATGTGCCACTGTGTGTGGGGGAACCTCGAGGGGCAGTAGGGTATGGTCCTGGATAACATaGTTGGTGGCCCGCTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: TWAPCATVCGGTSRGSRVWSWIT*LVARWD Trigger: ATCCCAGCGGGCCACCAACCATGTTATCCAGGACCA...TACCCTACTGCCCCTCGAGGTTCCCCCACACACAGTGGCACATGGCGCCCACGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | ACCACGTGGGCGCCATGTGCCACTGTGTGTGGGGGAACCTCGAGGGGCAGTAGGAGTGTGACTCATTTGTaGACTGTGTTGTCCCCATGG | + |
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Preference number: 2 (lower is better) Translates to: TTWAPCATVCGGTSRGSRSVTHL*TVLSPW Trigger: CCATGGGGACAACACAGTCCACAAATGAGTCACACT...CCTACTGCCCCTCGAGGTTCCCCCACACACAGTGGCACATGGCGCCCACGTGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR TCA 90 bp | ACCCTTAATGCCCCCAACCCCTCGCCAACCAAGATGTCGGATACACAATGTCTCAAGGGCCCCTCTTTGTaGCAGGCAGGGTTGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: TLNAPNPSPTKMSDTQCLKGPSL*QAGLAG Trigger: CCCAGCCAACCCTGCCTGTCACAAAGAGGGGCCCTT...GAGACATTGTGTATCCGACATCTTGGTTGGCGAGGGGTTGGGGGCATTAAGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR GCA 90 bp | ACGTGGGCGCCATGTGCCACTGTGTGTGGGGGAACCTCGAGGGGCAGTAGGGTAAGGCATGTGTCACCATaGCTGGCTAAGACTTTTCAC | + |
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Preference number: 2 (lower is better) Translates to: TWAPCATVCGGTSRGSRVRHVSP*LAKTFH Trigger: GTGAAAAGTCTTAGCCAGGCATGGTGACACATGCCT...TACCCTACTGCCCCTCGAGGTTCCCCCACACACAGTGGCACATGGCGCCCACGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | ACCCTTAATGCCCCCAACCCCTCGCCAACCAAGATGTCGGATACACAATGTCTCAGTGAGGTGCTGGGGTaGGTGGGGCGTGTACGTGCT | + |
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Preference number: 2 (lower is better) Translates to: TLNAPNPSPTKMSDTQCLSEVLG*VGRVRA Trigger: AGCACGTACACGCCCCACCCACCCCAGCACCTCACT...GAGACATTGTGTATCCGACATCTTGGTTGGCGAGGGGTTGGGGGCATTAAGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR TCA 90 bp | TTGATCCACACAGCCAGTCTGTCCCATATAGATGGCTCCACACCAGCCAGAGCTCTGTGCCAGCAAGCCTaGGTCTCCTCTCCCACTGTC | + |
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Preference number: 2 (lower is better) Translates to: LIHTASLSHIDGSTPARALCQQA*VSSPTV Trigger: GACAGTGGGAGAGGAGACTCAGGCTTGCTGGCACAG...AGCTCTGGCTGGTGTGGAGCCATCTATATGGGACAGACTGGCTGTGTGGATCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR GCA 90 bp | ACGTGGGCGCCATGTGCCACTGTGTGTGGGGGAACCTCGAGGGGCAGTAGGGTAAAATCTACTGGCCTCTaGTTTCAAGTGCTGGGAATA | + |
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Preference number: 2 (lower is better) Translates to: TWAPCATVCGGTSRGSRVKSTGL*FQVLGI Trigger: TATTCCCAGCACTTGAAAGCAGAGGCCAGTAGATTT...TACCCTACTGCCCCTCGAGGTTCCCCCACACACAGTGGCACATGGCGCCCACGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | AGGCAAGCACCGAGCCCAGGGGTCTCACATTTAAGCCATCACATTGGACATGAACATCTTCCCCAGTCCTaGGGCCCTGGGGATCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: RQAPSPGVSHLSHHIGHEHLPQS*GPGDLS Trigger: AGAGAGATCCCCAGGGCCCCAGGACTGGGGAAGATG...TTCATGTCCAATGTGATGGCTTAAATGTGAGACCCCTGGGCTCGGTGCTTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | TTGATCCACACAGCCAGTCTGTCCCATATAGATGGCTCCACACCAGCCAGAGCTTGTGACAGGCAGGGTTaGCTGGGACAACTCATTTTC | + |
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Preference number: 2 (lower is better) Translates to: LIHTASLSHIDGSTPARACDRQG*LGQLIF Trigger: GAAAATGAGTTGTCCCAGCCAACCCTGCCTGTCACA...AGCTCTGGCTGGTGTGGAGCCATCTATATGGGACAGACTGGCTGTGTGGATCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR GCA 90 bp | TATAGATGGCTCCACACCAGCCAGAGCTACCTGGTAAGATTCTTGTCTCAAAAACCAGGAGTAAAGGTGTaGACCACCACCACCCGGCAG | + |
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Preference number: 2 (lower is better) Translates to: YRWLHTSQSYLVRFLSQKPGVKV*TTTTRQ Trigger: CTGCCGGGTGGTGGTGGTGCACACCTTTACTCCTGG...TTTTTGAGACAAGAATCTTACCAGGTAGCTCTGGCTGGTGTGGAGCCATCTATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | ACCCTTAATGCCCCCAACCCCTCGCCAACCAAGATGTCGGATACACAATGTCTCCAGTCAGCTCAGGTATaGTCCTGGATAACATGGTTG | + |
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Preference number: 2 (lower is better) Translates to: TLNAPNPSPTKMSDTQCLQSAQV*SWITWL Trigger: CAACCATGTTATCCAGGACCATACCTGAGCTGACTG...GAGACATTGTGTATCCGACATCTTGGTTGGCGAGGGGTTGGGGGCATTAAGGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | TTGCCCAGCACAATGGAGTTGCTCTTGAAAGGGCCTTCAACCTGTTCCTGTTGGCTCATAGTGTTGAAATaGCTCCAGCCCCACCCACTT | + |
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Preference number: 2 (lower is better) Translates to: LPSTMELLLKGPSTCSCWLIVLK*LQPHPL Trigger: AAGTGGGTGGGGCTGGAGCCATTTCAACACTATGAG...CCAACAGGAACAGGTTGAAGGCCCTTTCAAGAGCAACTCCATTGTGCTGGGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
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| 3UTR-3UTR CCA 90 bp | TATAGATGGCTCCACACCAGCCAGAGCTACCTGGTAAGATTCTTGTCTCAAAAACTTAAAAGGTGCCTTTaGGAAGCTGGGCAAGGGTGG | + |
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Preference number: 2 (lower is better) Translates to: YRWLHTSQSYLVRFLSQKLKRCL*EAGQGW Trigger: CCACCCTTGCCCAGCTTCCCAAAGGCACCTTTTAAG...TTTTTGAGACAAGAATCTTACCAGGTAGCTCTGGCTGGTGTGGAGCCATCTATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CAA 90 bp | TATACTCTGTATGGCTTCAGATTGCCCAGCACAATGGAGTTGCTCTaGAAAGGGCCTTCAACCTGTTCCTGTTGGGTTTCTGACTTTTCC | + |
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Preference number: 2 (lower is better) Translates to: YTLYGFRLPSTMELL*KGPSTCSCWVSDFS Trigger: GGAAAAGTCAGAAACCCAACAGGAACAGGTTGAAGGCCCTTTCAAGAGCAACTCCATTGTGCTGGGCAATCTGAAGCCATACAGAGTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
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| 3UTR-3UTR TCA 90 bp | TATAGATGGCTCCACACCAGCCAGAGCTACCTGGTAAGATTCTTGTCTCAAAAAGATACTGGGCCAGTGTaGCTCATTTGTGGACTGTGT | + |
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Preference number: 2 (lower is better) Translates to: YRWLHTSQSYLVRFLSQKDTGPV*LICGLC Trigger: ACACAGTCCACAAATGAGTCACACTGGCCCAGTATC...TTTTTGAGACAAGAATCTTACCAGGTAGCTCTGGCTGGTGTGGAGCCATCTATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | TTAATGCCCCCAACCCCTCGCCAACCAAGATGTCGGATACACAATGTCTCTCATATGTGTCACCATGCCTaGCTAAGACTTTTCACAAGT | + |
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Preference number: 2 (lower is better) Translates to: LMPPTPRQPRCRIHNVSHMCHHA*LRLFTS Trigger: ACTTGTGAAAAGTCTTAGCCAGGCATGGTGACACAT...ATGAGAGACATTGTGTATCCGACATCTTGGTTGGCGAGGGGTTGGGGGCATTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR TCA 90 bp | TGTCACCATGCCTGGCTAAGACTTTTCACAAGTCAATACTTTACGGAAAACAGGACTCATTTTCCAGAGTaGAGGCAAGGAAGGACCCAG | + |
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Preference number: 2 (lower is better) Translates to: CHHAWLRLFTSQYFTENRTHFPE*RQGRTQ Trigger: CTGGGTCCTTCCTTGCCTTCACTCTGGAAAATGAGT...CCTGTTTTCCGTAAAGTATTGACTTGTGAAAAGTCTTAGCCAGGCATGGTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGGCTGAAGTCTCCGGATCAGCCTTACTAAATGTAACTGAAGAAAATACATTAATCACCTCTCTGTaGGTGAGGTGCTGGGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: FLAEVSGSALLNVTEENTLITSL*VRCWGG Trigger: CCCACCCCAGCACCTCACTCACAGAGAGGTGATTAA...TGTATTTTCTTCAGTTACATTTAGTAAGGCTGATCCGGAGACTTCAGCCAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CAA 90 bp | AAGGTTACTCTGCTTGTCACCTTAGATGTACGGTCTTTGTGCTTTTaGCCTTTAAAAATTCTGTATCCTCCTGCACTTGGCACCAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: KVTLLVTLDVRSLCF*PLKILYPPALGTRG Trigger: GCCTCTGGTGCCAAGTGCAGGAGGATACAGAATTTTTAAAGGCAAAAAGCACAAAGACCGTACATCTAAGGTGACAAGCAGAGTAACCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | TATAGATGGCTCCACACCAGCCAGAGCTACCTGGTAAGATTCTTGTCTCAAAAACTCACAGAAATCTACTaGCCTCTGCTTTCAAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: YRWLHTSQSYLVRFLSQKLTEIY*PLLSSA Trigger: AGCACTTGAAAGCAGAGGCCAGTAGATTTCTGTGAG...TTTTTGAGACAAGAATCTTACCAGGTAGCTCTGGCTGGTGTGGAGCCATCTATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CCA 90 bp | GTTCCTGTTGGGTTTCTGACTTTTCCCAGTAGTGGACAAGATACTGAAAAGTTGCAGGAAGACTGTGAATaGGTGTGGGAAAAGCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: VPVGFLTFPSSGQDTEKLQEDCE*VWEKLQ Trigger: TTGAAGCTTTTCCCACACCCATTCACAGTCTTCCTG...CAACTTTTCAGTATCTTGTCCACTACTGGGAAAAGTCAGAAACCCAACAGGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
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| 3UTR CAA 90 bp | GAGTGTTTCAAGGTTACTCTGCTTGTCACCTTAGATGTACGGTCTTaGTGCTTTTTGCCTTTAAAAATTCTGTATCCTCCTGCACTTGGC | + |
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Preference number: 2 (lower is better) Translates to: ECFKVTLLVTLDVRS*CFLPLKILYPPALG Trigger: GCCAAGTGCAGGAGGATACAGAATTTTTAAAGGCAAAAAGCACAAAGACCGTACATCTAAGGTGACAAGCAGAGTAACCTTGAAACACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 72 bp | AAGCCTGTGGGCGGGGGCTCCTCACAGCGGACCACGTaGGCGCCATGTGCCACTGTGTGTGGGGGAACCTCG | + |
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Preference number: 3 (lower is better) Translates to: KPVGGGSSQRTT*APCATVCGGTS Trigger: CGAGGTTCCCCCACACACAGTGGCACATGGCGCCCACGTGGTCCGCTGTGAGGAGCCCCCGCCCACAGGCTT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR TCA 72 bp | CAGTCCTGGGGCCCTGGGGATCTCTCTCGGGTGCACTaGTCGCTGCCCTCCTGGGCAAGCAGAGACCCTGGC | + |
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Preference number: 3 (lower is better) Translates to: QSWGPGDLSRVH*SLPSWASRDPG Trigger: GCCAGGGTCTCTGCTTGCCCAGGAGGGCAGCGATCAGTGCACCCGAGAGAGATCCCCAGGGCCCCAGGACTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 72 bp | ACAAACACTACACCATCTTCCCCAGTCCTGGGGCCCTaGGGATCTCTCTCGGGTGCACTGATCGCTGCCCTC | + |
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Preference number: 3 (lower is better) Translates to: TNTTPSSPVLGP*GSLSGALIAAL Trigger: GAGGGCAGCGATCAGTGCACCCGAGAGAGATCCCCAGGGCCCCAGGACTGGGGAAGATGGTGTAGTGTTTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR TCA 72 bp | AGTGTTGAAATGGCTCCAGCCCCACCCACTTGGAAGTaGGGTTCCCTCGCTTGGCTCGCACCCGCAGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: SVEMAPAPPTWK*GSLAWLAPAGR Trigger: TCTTCCTGCGGGTGCGAGCCAAGCGAGGGAACCTCACTTCCAAGTGGGTGGGGCTGGAGCCATTTCAACACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
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| 3UTR GCA 72 bp | CCTGCTGGCATTCTTGTCACCTTTGGCCCATTTGGCTaGCCTTTGGGGCTCAACCACAGCCACCTCCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: PAGILVTFGPFG*PLGLNHSHLLP Trigger: AGGCAGGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 72 bp | GCTCCCTGCTGGCATTCTTGTCACCTTTGGCCCATTTaGCTGCCCTTTGGGGCTCAACCACAGCCACCTCCT | + |
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Preference number: 3 (lower is better) Translates to: APCWHSCHLWPI*LPFGAQPQPPP Trigger: AGGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 72 bp | GGGCTCCATGCTCCCTGCTGGCATTCTTGTCACCTTTaGCCCATTTGGCTGCCCTTTGGGGCTCAACCACAG | + |
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Preference number: 3 (lower is better) Translates to: GLHAPCWHSCHL*PIWLPFGAQPQ Trigger: CTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGCATGGAGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 72 bp | GCATTCTTGTCACCTTTGGCCCATTTGGCTGCCCTTTaGGGCTCAACCACAGCCACCTCCTGCCTCAGGACA | + |
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Preference number: 3 (lower is better) Translates to: AFLSPLAHLAAL*GSTTATSCLRT Trigger: TGTCCTGAGGCAGGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR TCA 72 bp | ACATGGTTGGTGGCCCGCTGGGATACTGGGCCAGTGTaGCTCATTTGTGGACTGTGTTGTCCCCATGGCTTT | + |
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Preference number: 3 (lower is better) Translates to: TWLVARWDTGPV*LICGLCCPHGF Trigger: AAAGCCATGGGGACAACACAGTCCACAAATGAGTCACACTGGCCCAGTATCCCAGCGGGCCACCAACCATGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 72 bp | GGGACACTAAGGGCCCCTCTTTGTGACAGGCAGGGTTaGCTGGGACAACTCATTTTCCAGAGTGAAGGCAAG | + |
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Preference number: 3 (lower is better) Translates to: GTLRAPLCDRQG*LGQLIFQSEGK Trigger: CTTGCCTTCACTCTGGAAAATGAGTTGTCCCAGCCAACCCTGCCTGTCACAAAGAGGGGCCCTTAGTGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR CCA 72 bp | GGGCTTAAAAGGTGCCTTTGGGAAGCTGGGCAAGGGTaGCAGTCAGCTCAGGTATGGTCCTGGATAACATGG | + |
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Preference number: 3 (lower is better) Translates to: GLKRCLWEAGQG*QSAQVWSWITW Trigger: CCATGTTATCCAGGACCATACCTGAGCTGACTGCCACCCTTGCCCAGCTTCCCAAAGGCACCTTTTAAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR TCA 72 bp | TTTTCCAGAGTGAAGGCAAGGAAGGACCCAGTCTTCTaGCAGCAGGGGCAGCTAACACTGGAGAAAGCACCA | + |
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Preference number: 3 (lower is better) Translates to: FSRVKARKDPVF*QQGQLTLEKAP Trigger: TGGTGCTTTCTCCAGTGTTAGCTGCCCCTGCTGTCAGAAGACTGGGTCCTTCCTTGCCTTCACTCTGGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CAA 90 bp | TTAATGCCCCCAACCCCTCGCCAACCAAGATGTCGGATACACAATGTCTCTCATGCCAGTGTGACTCATTaGTGGACTGTGTTGTCCCCA | + |
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Preference number: 3 (lower is better) Translates to: LMPPTPRQPRCRIHNVSHASVTH*WTVLSP Trigger: TGGGGACAACACAGTCCACAAATGAGTCACACTGGC...ATGAGAGACATTGTGTATCCGACATCTTGGTTGGCGAGGGGTTGGGGGCATTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR-3UTR CAA 90 bp | GGTAATGCAATGGTAAAGAGGGCTGTAAAACTGCTTTTCTGTTTCCTCTGGGCGGTGTTTGCTCTGAGCTaGGGCTCCATGCTCCCTGCT | + |
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Preference number: 3 (lower is better) Translates to: GNAMVKRAVKLLFCFLWAVFALS*GSMLPA Trigger: AGCAGGGAGCATGGAGCCCAAGCTCAGAGCAAACAC...CGCCCAGAGGAAACAGAAAAGCAGTTTTACAGCCCTCTTTACCATTGCATTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| 3UTR GCA 72 bp | GTCGGATACACAATGTCTCTCATTAGAGAGGCTCCCTaGTTCTCCCTAAGGTCTCAGCACCCAACAGAGGAT | + |
|
Preference number: 3 (lower is better) Translates to: VGYTMSLIREAP*FSLRSQHPTED Trigger: ATCCTCTGTTGGGTGCTGAGACCTTAGGGAGAAGCAGGGAGCCTCTCTAATGAGAGACATTGTGTATCCGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR-3UTR CAA 90 bp | TGGCTTCAGATTGCCCAGCACAATGGAGTTGCTCTTGAAAGGGCCTTCAACCTGAACATTCTCATAGTGTaGAAATGGCTCCAGCCCCAC | + |
|
Preference number: 3 (lower is better) Translates to: WLQIAQHNGVALERAFNLNILIV*KWLQPH Trigger: GTGGGGCTGGAGCCATTTCAACACTATGAGAATGTT...CAGGTTGAAGGCCCTTTCAAGAGCAACTCCATTGTGCTGGGCAATCTGAAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
||
| 3UTR GCA 72 bp | AGGCTGGCCTCAAACTCACAGAAATCTACTGGCCTCTaGTTTCAAGTGCTGGGAATAAAGGCATGTGTCACC | + |
|
Preference number: 3 (lower is better) Translates to: RLASNSQKSTGL*FQVLGIKACVT Trigger: GGTGACACATGCCTTTATTCCCAGCACTTGAAAGCAGAGGCCAGTAGATTTCTGTGAGTTTGAGGCCAGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CCA 72 bp | GTAGACCAGGCTGGCCTCAAACTCACAGAAATCTACTaGCCTCTGCTTTCAAGTGCTGGGAATAAAGGCATG | + |
|
Preference number: 3 (lower is better) Translates to: VDQAGLKLTEIY*PLLSSAGNKGM Trigger: CATGCCTTTATTCCCAGCACTTGAAAGCAGAGGCCAGTAGATTTCTGTGAGTTTGAGGCCAGCCTGGTCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CCA 72 bp | TATCTTGATCCACACAGCCAGTCTGTCCCATATAGATaGCTCCACACCAGCCAGAGCTACCTGGTAAGATTC | + |
|
Preference number: 3 (lower is better) Translates to: YLDPHSQSVPYR*LHTSQSYLVRF Trigger: GAATCTTACCAGGTAGCTCTGGCTGGTGTGGAGCCATCTATATGGGACAGACTGGCTGTGTGGATCAAGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CCA 72 bp | CTTTTTGCCTTTAAAAATTCTGTATCCTCCTGCACTTaGCACCAGAGGCACAGGTCCACCCAGGCCATAAAT | + |
|
Preference number: 3 (lower is better) Translates to: LFAFKNSVSSCT*HQRHRSTQAIN Trigger: ATTTATGGCCTGGGTGGACCTGTGCCTCTGGTGCCAAGTGCAGGAGGATACAGAATTTTTAAAGGCAAAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR TCA 72 bp | AGGACAACAGACCAGTCTCACCCCCAAAACAGTTTGTaGTGGCTACTCTTGGTTGTCAACTTGACTACAGTT | + |
|
Preference number: 3 (lower is better) Translates to: RTTDQSHPQNSL*WLLLVVNLTTV Trigger: AACTGTAGTCAAGTTGACAACCAAGAGTAGCCATCACAAACTGTTTTGGGGGTGAGACTGGTCTGTTGTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR TCA 72 bp | GCTGTAAAACTGCTTTTCTGTTTCCTCTGGGCGTGGTaGCACATGCCCTGTGATGTTGAAGATATCTTGATC | + |
|
Preference number: 3 (lower is better) Translates to: AVKLLFCFLWAW*HMPCDVEDILI Trigger: GATCAAGATATCTTCAACATCACAGGGCATGTGTCACCACGCCCAGAGGAAACAGAAAAGCAGTTTTACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR TCA 72 bp | GTGACTCATTTGTGGACTGTGTTGTCCCCATGGCTTTaGAGAACTAAGGGAAGAGACAGTAGGAACATCTTT | + |
|
Preference number: 3 (lower is better) Translates to: VTHLWTVLSPWL*RTKGRDSRNIF Trigger: AAAGATGTTCCTACTGTCTCTTCCCTTAGTTCTTCAAAGCCATGGGGACAACACAGTCCACAAATGAGTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR TCA 72 bp | GTTATGTCTAAAATAATTACTATGTTCTGCCAGGAATaGGTGTTTCAAGGTTACTCTGCTTGTCACCTTAGA | + |
|
Preference number: 3 (lower is better) Translates to: VMSKIITMFCQE*VFQGYSACHLR Trigger: TCTAAGGTGACAAGCAGAGTAACCTTGAAACACTCATTCCTGGCAGAACATAGTAATTATTTTAGACATAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR GCA 90 bp | ACGTGGGCGCCATGTGCCACTGTGTGTGGGGGAACCTCGAGGGGCAGTAGGGTAATCAGGATGACTTGCTaGAGCCTGGCGGAGGCATTT | + |
|
Preference number: 4 (lower is better) Translates to: TWAPCATVCGGTSRGSRVIRMTC*SLAEAF Trigger: AAATGCCTCCGCCAGGCTGCAGCAAGTCATCCTGAT...TACCCTACTGCCCCTCGAGGTTCCCCCACACACAGTGGCACATGGCGCCCACGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR GCA 90 bp | GCCCAGCACAATGGAGTTGCTCTTGAAAGGGCCTTCAACCTGTTCCTGTTGGGTGCCAAGAGCCATCGATaGTGGCGAGGACGCCGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: AQHNGVALERAFNLFLLGAKSHR*WRGRRG Trigger: GCCGCGGCGTCCTCGCCAGCATCGATGGCTCTTGGC...ACCCAACAGGAACAGGTTGAAGGCCCTTTCAAGAGCAACTCCATTGTGCTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
||
| CDS-3UTR CCA 90 bp | ACCACGTGGGCGCCATGTGCCACTGTGTGTGGGGGAACCTCGAGGGGCAGTAGGCTCATAGTGTTGAAATaGCTCCAGCCCCACCCACTT | + |
|
Preference number: 4 (lower is better) Translates to: TTWAPCATVCGGTSRGSRLIVLK*LQPHPL Trigger: AAGTGGGTGGGGCTGGAGCCATTTCAACACTATGAG...CCTACTGCCCCTCGAGGTTCCCCCACACACAGTGGCACATGGCGCCCACGTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CAA 72 bp | GGCATTCTTGTCACCTTTGGCCCATTTGGCTGCCCTTaGGGGCTCAACCACAGCCACCTCCTGCCTCAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: GILVTFGPFGCP*GLNHSHLLPQD Trigger: GTCCTGAGGCAGGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CAA 72 bp | TGCTCCCTGCTGGCATTCTTGTCACCTTTGGCCCATTaGGCTGCCCTTTGGGGCTCAACCACAGCCACCTCC | + |
|
Preference number: 4 (lower is better) Translates to: CSLLAFLSPLAH*AALWGSTTATS Trigger: GGAGGTGGCTGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CAA 72 bp | TGGGCTCCATGCTCCCTGCTGGCATTCTTGTCACCTTaGGCCCATTTGGCTGCCCTTTGGGGCTCAACCACA | + |
|
Preference number: 4 (lower is better) Translates to: WAPCSLLAFLSP*AHLAALWGSTT Trigger: TGTGGTTGAGCCCCAAAGGGCAGCCAAATGGGCCAAAGGTGACAAGAATGCCAGCAGGGAGCATGGAGCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CCA 90 bp | ACCCTTAATGCCCCCAACCCCTCGCCAACCAAGATGTCGGATACACAATGTCTCGTACAGGTGAAGCCTTaGGTTCAGAGGGGCCGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: TLNAPNPSPTKMSDTQCLVQVKP*VQRGRK Trigger: CTTGCGGCCCCTCTGAACCCAAGGCTTCACCTGTAC...GAGACATTGTGTATCCGACATCTTGGTTGGCGAGGGGTTGGGGGCATTAAGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR GCA 90 bp | CTGGGCCAGTGTGACTCATTTGTGGACTGTGTTGTCCCCATGGCTTTGAAGAACCTGGTCTTGGGTCATTaGTGGAAGGTGACGGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LGQCDSFVDCVVPMALKNLVLGH*WKVTAP Trigger: GGGAGCCGTCACCTTCCAGCAATGACCCAAGACCAG...GTTCTTCAAAGCCATGGGGACAACACAGTCCACAAATGAGTCACACTGGCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CCA 90 bp | AACCACAGCCACCTCCTGCCTCAGGACAACAGACCAGTCTCACCCCCAAAACAGCAGGAAGACTGTGAATaGGTGTGGGAAAAGCTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: NHSHLLPQDNRPVSPPKQQEDCE*VWEKLQ Trigger: TTGAAGCTTTTCCCACACCCATTCACAGTCTTCCTG...CTGTTTTGGGGGTGAGACTGGTCTGTTGTCCTGAGGCAGGAGGTGGCTGTGGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR TCA 90 bp | TATAGATGGCTCCACACCAGCCAGAGCTACCTGGTAAGATTCTTGTCTCAAAAACCAACGGAATCAGGATaGCTTGCTGCAGCCTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: YRWLHTSQSYLVRFLSQKPTESG*LAAAWR Trigger: CCGCCAGGCTGCAGCAAGTCATCCTGATTCCGTTGG...TTTTTGAGACAAGAATCTTACCAGGTAGCTCTGGCTGGTGTGGAGCCATCTATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CCA 90 bp | TTAATGCCCCCAACCCCTCGCCAACCAAGATGTCGGATACACAATGTCTCTCATCACCTGGTAGACCACTaGTCTTGGGTCATTGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LMPPTPRQPRCRIHNVSHHLVDH*SWVIAG Trigger: TCCAGCAATGACCCAAGACCAGTGGTCTACCAGGTG...ATGAGAGACATTGTGTATCCGACATCTTGGTTGGCGAGGGGTTGGGGGCATTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CAA 72 bp | TGTTTTGTTTACCAGACAGGGTTTCTCTGTGTAGCCTaGGCTGTCCTAGACCAGGACTCTAGACCAGGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: CFVYQTGFLCVA*AVLDQDSRPGW Trigger: CCAGCCTGGTCTAGAGTCCTGGTCTAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTGGTAAACAAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CAA 72 bp | ACTCTGTATGGCTTCAGATTGCCCAGCACAATGGAGTaGCTCTTGAAAGGGCCTTCAACCTGTTCCTGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: TLYGFRLPSTME*LLKGPSTCSCW Trigger: CCAACAGGAACAGGTTGAAGGCCCTTTCAAGAGCAACTCCATTGTGCTGGGCAATCTGAAGCCATACAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
||
| 3UTR CAA 72 bp | GTTTTTCGGAGGTCCAACAGTAACATTCTCATAGTGTaGAAATGGCTCCAGCCCCACCCACTTGGAAGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: VFRRSNSNILIV*KWLQPHPLGSE Trigger: CTCACTTCCAAGTGGGTGGGGCTGGAGCCATTTCAACACTATGAGAATGTTACTGTTGGACCTCCGAAAAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
||
| 3UTR CAA 72 bp | TATGGCTTCAGATTGCCCAGCACAATGGAGTTGCTCTaGAAAGGGCCTTCAACCTGTTCCTGTTGGGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: YGFRLPSTMELL*KGPSTCSCWVS Trigger: AGAAACCCAACAGGAACAGGTTGAAGGCCCTTTCAAGAGCAACTCCATTGTGCTGGGCAATCTGAAGCCATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
||
| CDS-3UTR GCA 90 bp | GAAACACGTGCACTTCTTTTTCCTGTTTTGTTTACCAGACAGGGTTTCTCTGTGCAGGCCGAGCAGCAATaGGAAGATGCCCAACGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: ETRALLFPVLFTRQGFSVQAEQQ*EDAQRN Trigger: ATTCCGTTGGGCATCTTCGCATTGCTGCTCGGCCTG...CACAGAGAAACCCTGTCTGGTAAACAAAACAGGAAAAAGAAGTGCACGTGTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR GCA 90 bp | GGTAATGCAATGGTAAAGAGGGCTGTAAAACTGCTTTTCTGTTTCCTCTGGGCGTGTATGGCTTCAGATTaGCCAGCACAATGGAGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: GNAMVKRAVKLLFCFLWACMASD*PAQWSC Trigger: GCAACTCCATTGTGCTGGGCAATCTGAAGCCATACA...CGCCCAGAGGAAACAGAAAAGCAGTTTTACAGCCCTCTTTACCATTGCATTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR TCA 90 bp | TATAGATGGCTCCACACCAGCCAGAGCTACCTGGTAAGATTCTTGTCTCAAAAATGGAGAAGAAATAATTaGCACGGAGTCCCAGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: YRWLHTSQSYLVRFLSQKWRRNN*HGVPGV Trigger: GACTCCTGGGACTCCGTGTCAATTATTTCTTCTCCA...TTTTTGAGACAAGAATCTTACCAGGTAGCTCTGGCTGGTGTGGAGCCATCTATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CCA 90 bp | TTTCTGGCTGAAGTCTCCGGATCAGCCTTACTAAATGTAACTGAAGAAAATACAACAATATACTCTGTATaGCTTCAGATTGCCCAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: FLAEVSGSALLNVTEENTTIYSV*LQIAQH Trigger: GTGCTGGGCAATCTGAAGCCATACAGAGTATATTGT...TGTATTTTCTTCAGTTACATTTAGTAAGGCTGATCCGGAGACTTCAGCCAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| 3UTR CAA 72 bp | AAGGTTACTCTGCTTGTCACCTTAGATGTACGGTCTTaGTGCTTTTTGCCTTTAAAAATTCTGTATCCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KVTLLVTLDVRS*CFLPLKILYPP Trigger: AGGAGGATACAGAATTTTTAAAGGCAAAAAGCACAAAGACCGTACATCTAAGGTGACAAGCAGAGTAACCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS GCA 90 bp | TTTGAGGAACAGGGTGAAGCAGGCGCCCGTCAGGCCGAGCAGCAATaGGAAGATGCCCAACGGAATCAGGATGACTTGCTGCAGCCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: FEEQGEAGARQAEQQ*EDAQRNQDDLLQPG Trigger: GCCAGGCTGCAGCAAGTCATCCTGATTCCGTTGGGCATCTTCGCATTGCTGCTCGGCCTGACGGGCGCCTGCTTCACCCTGTTCCTCAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS GCA 90 bp | GCCCAACGGAATCAGGATGACTTGCTGCAGCCTGGCGGAGGCATTTaGTGTTGTTTCGTGACAGGATACATTGCTCAAGAGCCCATGTGG | + |
|
Preference number: 5 (lower is better) Translates to: AQRNQDDLLQPGGGI*CCFVTGYIAQEPMW Trigger: CCACATGGGCTCTTGAGCAATGTATCCTGTCACGAAACAACAGCAAATGCCTCCGCCAGGCTGCAGCAAGTCATCCTGATTCCGTTGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CAA 90 bp | ACCCTTAATGCCCCCAACCCCTCGCCAACCAAGATGTCGGATACACAATGTCTCGGTAGACCACTGGTCTaGGGTCATTGCTGGAAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: TLNAPNPSPTKMSDTQCLGRPLV*GHCWKV Trigger: CACCTTCCAGCAATGACCCAAGACCAGTGGTCTACC...GAGACATTGTGTATCCGACATCTTGGTTGGCGAGGGGTTGGGGGCATTAAGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CAA 90 bp | GCCTTGGCTGTCCTAGACCAGGACTCTAGACCAGGCTGGCCTCGAACTCACAGAAACATTCTCATAGTGTaGAAATGGCTCCAGCCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: ALAVLDQDSRPGWPRTHRNILIV*KWLQPH Trigger: GTGGGGCTGGAGCCATTTCAACACTATGAGAATGTT...TCTGTGAGTTCGAGGCCAGCCTGGTCTAGAGTCCTGGTCTAGGACAGCCAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CAA 90 bp | AGGCAAGCACCGAGCCCAGGGGTCTCACATTTAAGCCATCACATTGGACATGAATTTGTTCCGGGATGTTaGGCGGAGCCTGAAACCAGT | + |
|
Preference number: 5 (lower is better) Translates to: RQAPSPGVSHLSHHIGHEFVPGC*AEPETS Trigger: ACTGGTTTCAGGCTCCGCCAAACATCCCGGAACAAA...TTCATGTCCAATGTGATGGCTTAAATGTGAGACCCCTGGGCTCGGTGCTTGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CAA 90 bp | AGGCAAGCACCGAGCCCAGGGGTCTCACATTTAAGCCATCACATTGGACATGAAACTCGGCTTTGGTATTaGAGGAACAGGGTGAAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RQAPSPGVSHLSHHIGHETRLWY*RNRVKQ Trigger: CTGCTTCACCCTGTTCCTCAAATACCAAAGCCGAGT...TTCATGTCCAATGTGATGGCTTAAATGTGAGACCCCTGGGCTCGGTGCTTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CAA 90 bp | AGGCAAGCACCGAGCCCAGGGGTCTCACATTTAAGCCATCACATTGGACATGAAACAATGGAGTTGCTCTaGAAAGGGCCTTCAACCTGT | + |
|
Preference number: 5 (lower is better) Translates to: RQAPSPGVSHLSHHIGHETMELL*KGPSTC Trigger: ACAGGTTGAAGGCCCTTTCAAGAGCAACTCCATTGT...TTCATGTCCAATGTGATGGCTTAAATGTGAGACCCCTGGGCTCGGTGCTTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS TCA 90 bp | AGGAGTCCTCCTTCGGTGAACCGTCCTTGTCCAAGACCTCTAAGATaGATTGGTCTGGGTCCTTTAGATACTCTTCGATTTGTTCCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: RSPPSVNRPCPRPLR*IGLGPLDTLRFVPG Trigger: TCCCGGAACAAATCGAAGAGTATCTAAAGGACCCAGACCAATTCATCTTAGAGGTCTTGGACAAGGACGGTTCACCGAAGGAGGACTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS CCA 90 bp | TCCTCCTTCGGTGAACCGTCCTTGTCCAAGACCTCTAAGATGAATTaGTCTGGGTCCTTTAGATACTCTTCGATTTGTTCCGGGATGTTT | + |
|
Preference number: 5 (lower is better) Translates to: SSFGEPSLSKTSKMN*SGSFRYSSICSGMF Trigger: AAACATCCCGGAACAAATCGAAGAGTATCTAAAGGACCCAGACCAATTCATCTTAGAGGTCTTGGACAAGGACGGTTCACCGAAGGAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CAA 90 bp | TGTCACCATGCCTGGCTAAGACTTTTCACAAGTCAATACTTTACGGAAAACAGGTTCGGTGAACCGTCCTaGTCCAAGACCTCTAAGATG | + |
|
Preference number: 5 (lower is better) Translates to: CHHAWLRLFTSQYFTENRFGEPS*SKTSKM Trigger: CATCTTAGAGGTCTTGGACAAGGACGGTTCACCGAA...CCTGTTTTCCGTAAAGTATTGACTTGTGAAAAGTCTTAGCCAGGCATGGTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS-3UTR CAA 90 bp | TGTCACCATGCCTGGCTAAGACTTTTCACAAGTCAATACTTTACGGAAAACAGGCGGAGGCATTTGCTGTaGTTTCGTGACAGGATACAT | + |
|
Preference number: 5 (lower is better) Translates to: CHHAWLRLFTSQYFTENRRRHLL*FRDRIH Trigger: ATGTATCCTGTCACGAAACAACAGCAAATGCCTCCG...CCTGTTTTCCGTAAAGTATTGACTTGTGAAAAGTCTTAGCCAGGCATGGTGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS CCA 72 bp | CCCTCGCTTGGCTCGCACCCGCAGGAAGACTGTGAATaGGTGTGGGAAAAGCTTCAAGCGGCCGCCTCCTGT | + |
|
Preference number: 6 (lower is better) Translates to: PSLGSHPQEDCE*VWEKLQAAASC Trigger: ACAGGAGGCGGCCGCTTGAAGCTTTTCCCACACCCATTCACAGTCTTCCTGCGGGTGCGAGCCAAGCGAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS GCA 72 bp | TCTGTGATGTCCGTACAGTTCGGCTCCAGCAACCTATaGCAAGAGCCATCGATGCTGGCGAGGACGCCGCGG | + |
|
Preference number: 6 (lower is better) Translates to: SVMSVQFGSSNL*QEPSMLARTPR Trigger: CCGCGGCGTCCTCGCCAGCATCGATGGCTCTTGGCATAGGTTGCTGGAGCCGAACTGTACGGACATCACAGA 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127644.2 |
||
| CDS CAA 90 bp | TTCCGGGATGTTTGGCGGAGCCTGAAACCAGTACTTCACTCGGCTTaGGTATTTGAGGAACAGGGTGAAGCAGGCGCCCGTCAGGCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: FRDVWRSLKPVLHSA*VFEEQGEAGARQAE Trigger: CTCGGCCTGACGGGCGCCTGCTTCACCCTGTTCCTCAAATACCAAAGCCGAGTGAAGTACTGGTTTCAGGCTCCGCCAAACATCCCGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS CAA 90 bp | CAGGCCGAGCAGCAATGCGAAGATGCCCAACGGAATCAGGATGACTaGCTGCAGCCTGGCGGAGGCATTTGCTGTTGTTTCGTGACAGGA | + |
|
Preference number: 6 (lower is better) Translates to: QAEQQCEDAQRNQDD*LQPGGGICCCFVTG Trigger: TCCTGTCACGAAACAACAGCAAATGCCTCCGCCAGGCTGCAGCAAGTCATCCTGATTCCGTTGGGCATCTTCGCATTGCTGCTCGGCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS CAA 90 bp | ACGGCTCCCAAGTTAGAATCTGCTCATCATTGTACAGGTGAAGCCTaGGGTTCAGAGGGGCCGCAAGCTGGGAAAACGAGTCTGGCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: TAPKLESAHHCTGEA*GSEGPQAGKTSLAR Trigger: CCTCGCCAGACTCGTTTTCCCAGCTTGCGGCCCCTCTGAACCCAAGGCTTCACCTGTACAATGATGAGCAGATTCTAACTTGGGAGCCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS TCA 72 bp | AGCGGCCGCCTCCTGTTAAGTCACACTTTGTCTCTGTaGTGTCCGTACAGTTCGGCTCCAGCAACCTATGCC | + |
|
Preference number: 6 (lower is better) Translates to: SGRLLLSHTLSL*CPYSSAPATYA Trigger: GGCATAGGTTGCTGGAGCCGAACTGTACGGACATCACAGAGACAAAGTGTGACTTAACAGGAGGCGGCCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS TCA 72 bp | TGCTGCAGCCTGGCGGAGGCATTTGCTGTTGTTTCGTaGCAGGATACATTGCTCAAGAGCCCATGTGGTCGG | + |
|
Preference number: 6 (lower is better) Translates to: CCSLAEAFAVVS*QDTLLKSPCGR Trigger: CCGACCACATGGGCTCTTGAGCAATGTATCCTGTCACGAAACAACAGCAAATGCCTCCGCCAGGCTGCAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
||
| CDS CAA 72 bp | GTTTGGCGGAGCCTGAAACCAGTACTTCACTCGGCTTaGGTATTTGAGGAACAGGGTGAAGCAGGCGCCCGT | + |
|
Preference number: 6 (lower is better) Translates to: VWRSLKPVLHSA*VFEEQGEAGAR Trigger: ACGGGCGCCTGCTTCACCCTGTTCCTCAAATACCAAAGCCGAGTGAAGTACTGGTTTCAGGCTCCGCCAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS CAA 72 bp | ACGGAGTCCCAGGAGTCCTCCTTCGGTGAACCGTCCTaGTCCAAGACCTCTAAGATGAATTGGTCTGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: TESQESSFGEPS*SKTSKMNWSGS Trigger: GGACCCAGACCAATTCATCTTAGAGGTCTTGGACAAGGACGGTTCACCGAAGGAGGACTCCTGGGACTCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS TCA 72 bp | GGCTCCCAAGTTAGAATCTGCTCATCATTGTACAGGTaGAGCCTTGGGTTCAGAGGGGCCGCAAGCTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: GSQVRICSSLYR*SLGFRGAASWE Trigger: TTCCCAGCTTGCGGCCCCTCTGAACCCAAGGCTTCACCTGTACAATGATGAGCAGATTCTAACTTGGGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS CAA 72 bp | CAGCAATGCGAAGATGCCCAACGGAATCAGGATGACTaGCTGCAGCCTGGCGGAGGCATTTGCTGTTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: QQCEDAQRNQDD*LQPGGGICCCF Trigger: GAAACAACAGCAAATGCCTCCGCCAGGCTGCAGCAAGTCATCCTGATTCCGTTGGGCATCTTCGCATTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS GCA 72 bp | TCTGTGATGTCCGTACAGTTCGGCTCCAGCAACCTATaGCAAGAGCCATCGATGAAGCTATATTCCACCTGG | + |
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Preference number: 6 (lower is better) Translates to: SVMSVQFGSSNL*QEPSMKLYSTW Trigger: CCAGGTGGAATATAGCTTCATCGATGGCTCTTGGCATAGGTTGCTGGAGCCGAACTGTACGGACATCACAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS CAA 72 bp | AAGTTAGAATCTGCTCATCATTGTACAGGTGAAGCCTaGGGTTCAGAGGGGCCGCAAGCTGGGAAAACGAGT | + |
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Preference number: 6 (lower is better) Translates to: KLESAHHCTGEA*GSEGPQAGKTS Trigger: ACTCGTTTTCCCAGCTTGCGGCCCCTCTGAACCCAAGGCTTCACCTGTACAATGATGAGCAGATTCTAACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS CAA 90 bp | ATAATTGACACGGAGTCCCAGGAGTCCTCCTTCGGTGAACCGTCCTaGTCCAAGACCTCTAAGATGAATTGGTCTGGGTCCTTTAGATAC | + |
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Preference number: 6 (lower is better) Translates to: IIDTESQESSFGEPS*SKTSKMNWSGSFRY Trigger: GTATCTAAAGGACCCAGACCAATTCATCTTAGAGGTCTTGGACAAGGACGGTTCACCGAAGGAGGACTCCTGGGACTCCGTGTCAATTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS CAA 72 bp | GGTCCTTTAGATACTCTTCGATTTGTTCCGGGATGTTaGGCGGAGCCTGAAACCAGTACTTCACTCGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: GPLDTLRFVPGC*AEPETSTSLGF Trigger: AAAGCCGAGTGAAGTACTGGTTTCAGGCTCCGCCAAACATCCCGGAACAAATCGAAGAGTATCTAAAGGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS TCA 72 bp | CCTTCGGTGAACCGTCCTTGTCCAAGACCTCTAAGATaGATTGGTCTGGGTCCTTTAGATACTCTTCGATTT | + |
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Preference number: 6 (lower is better) Translates to: PSVNRPCPRPLR*IGLGPLDTLRF Trigger: AAATCGAAGAGTATCTAAAGGACCCAGACCAATTCATCTTAGAGGTCTTGGACAAGGACGGTTCACCGAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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| CDS CCA 72 bp | GGTGAACCGTCCTTGTCCAAGACCTCTAAGATGAATTaGTCTGGGTCCTTTAGATACTCTTCGATTTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: GEPSLSKTSKMN*SGSFRYSSICS Trigger: GGAACAAATCGAAGAGTATCTAAAGGACCCAGACCAATTCATCTTAGAGGTCTTGGACAAGGACGGTTCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023687.9 |
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