Pregenerated sensors for IFNGR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020009Ensembl transcript IDs: ENSMUST00000020188.13, ENSMUST00000164591.3
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCCCACGAGGCCACTGTCAGAGCCGTTTCGGGAGTGATAGGCGGTaGGGCTACAAGGGCCTGACTGGTTACTACTTAACAGGGAAAAGC | + |
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Preference number: 1 (lower is better) Translates to: IPRGHCQSRFGSDRR*GYKGLTGYYLTGKS Trigger: GCTTTTCCCTGTTAAGTAGTAACCAGTCAGGCCCTTGTAGCCTCACCGCCTATCACTCCCGAAACGGCTCTGACAGTGGCCTCGTGGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR GCA 90 bp | GTCTTTGTGTCGGAGTTGGAGGGCTGTCTGGGGTCATGGCAGACGTaGTTCCTCCAGCCTCCAGAGCCTTTGTTTCTTTTGAAAGTTCTT | + |
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Preference number: 1 (lower is better) Translates to: VFVSELEGCLGSWQT*FLQPPEPLFLLKVL Trigger: AAGAACTTTCAAAAGAAACAAAGGCTCTGGAGGCTGGAGGAAGCACGTCTGCCATGACCCCAGACAGCCCTCCAACTCCGACACAAAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR TCA 90 bp | CCAAACATGGTTCCCTGGCTCTCTCCATTCACAACGACTTCAGGGTaGAATACGAGGACGGAGAGCTGTTCTTCCTTCTTCCTCCTGATC | + |
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Preference number: 1 (lower is better) Translates to: PNMVPWLSPFTTTSG*NTRTESCSSFFLLI Trigger: GATCAGGAGGAAGAAGGAAGAACAGCTCTCCGTCCTCGTATTTCACCCTGAAGTCGTTGTGAATGGAGAGAGCCAGGGAACCATGTTTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR TCA 90 bp | CACAGATCACCGTCTCACTCTCTAGGACAGCTGGCTGGTGCGGTGTaGCAAGTGAATACTTCGATTCAGGTTTTGTCTCTAACGTGGCAC | + |
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Preference number: 1 (lower is better) Translates to: HRSPSHSLGQLAGAV*QVNTSIQVLSLTWH Trigger: GTGCCACGTTAGAGACAAAACCTGAATCGAAGTATTCACTTGTCACACCGCACCAGCCAGCTGTCCTAGAGAGTGAGACGGTGATCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR GCA 90 bp | GGCTCTTCACAGATCACCGTCTCACTCTCTAGGACAGCTGGCTGGTaGGGTGTGACAAGTGAATACTTCGATTCAGGTTTTGTCTCTAAC | + |
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Preference number: 1 (lower is better) Translates to: GSSQITVSLSRTAGW*GVTSEYFDSGFVSN Trigger: GTTAGAGACAAAACCTGAATCGAAGTATTCACTTGTCACACCGCACCAGCCAGCTGTCCTAGAGAGTGAGACGGTGATCTGTGAAGAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR TCA 90 bp | AACTACTGTAAAGACGGTAAGAGGAGCAACCACCAGAATCCAAATTaGATCCTTTCTGTCATCATGGAAAGGAGGGATACAGACGTCTTT | + |
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Preference number: 1 (lower is better) Translates to: NYCKDGKRSNHQNPN*ILSVIMERRDTDVF Trigger: AAAGACGTCTGTATCCCTCCTTTCCATGATGACAGAAAGGATTCAATTTGGATTCTGGTGGTTGCTCCTCTTACCGTCTTTACAGTAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR GCA 90 bp | TGGAAAGGAGGGATACAGACGTCTTTCGATTTTTCTGTTCTAACTTaGCAGAAAGATGAGATTCCGTCTACTGAAATACAATATCTGGAA | + |
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Preference number: 1 (lower is better) Translates to: WKGGIQTSFDFSVLT*QKDEIPSTEIQYLE Trigger: TTCCAGATATTGTATTTCAGTAGACGGAATCTCATCTTTCTGGCAAGTTAGAACAGAAAAATCGAAAGACGTCTGTATCCCTCCTTTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR-3UTR CCA 90 bp | TGTGTCGGAGTTGGAGGGCTGTCTGGGGTCATGGCAGACGTGCTTCCTCCAGCCTGCTTCGGGGCTGTCTaGAGCTGTCACTGTGGACAG | + |
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Preference number: 2 (lower is better) Translates to: CVGVGGLSGVMADVLPPACFGAV*SCHCGQ Trigger: CTGTCCACAGTGACAGCTCCAGACAGCCCCGAAGCA...GGCTGGAGGAAGCACGTCTGCCATGACCCCAGACAGCCCTCCAACTCCGACACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR-3UTR TCA 90 bp | GGCTGTCTGGGGTCATGGCAGACGTGCTTCCTCCAGCCTCCAGAGCCTTTGTTTCCCTGTCCTGTGAGATaGTCAGGGTGGAGGAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: GCLGSWQTCFLQPPEPLFPCPVR*SGWRSS Trigger: ACTGCTCCTCCACCCTGATCATCTCACAGGACAGGG...AAACAAAGGCTCTGGAGGCTGGAGGAAGCACGTCTGCCATGACCCCAGACAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR CAA 90 bp | ATGCTAGCCCACCTGGGAAGGAGCCAGAAGCGACAATACGTTCCTTaGATAGTCTTGGCATTTGCAGAGTGGACCCAGCAGTGCCCACAG | + |
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Preference number: 2 (lower is better) Translates to: MLAHLGRSQKRQYVP*IVLAFAEWTQQCPQ Trigger: CTGTGGGCACTGCTGGGTCCACTCTGCAAATGCCAAGACTATCAAAGGAACGTATTGTCGCTTCTGGCTCCTTCCCAGGTGGGCTAGCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| 3UTR CAA 90 bp | CCATGGGGGCCTTTCTCACGGGTGGAGGGTCGTGCTCTGCCATCTTaGTTTCTGAGTTGTTGTTTGGGAGAGATTCCAAGTCCGATATGG | + |
|
Preference number: 2 (lower is better) Translates to: PWGPFSRVEGRALPS*FLSCCLGEIPSPIW Trigger: CCATATCGGACTTGGAATCTCTCCCAAACAACAACTCAGAAACAAAGATGGCAGAGCACGACCCTCCACCCGTGAGAAAGGCCCCCATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR CAA 90 bp | CACCTGGGAAGGAGCCAGAAGCGACAATACGTTCCTTTGATAGTCTaGGCATTTGCAGAGTGGACCCAGCAGTGCCCACAGGATCCTTAT | + |
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Preference number: 2 (lower is better) Translates to: HLGRSQKRQYVPLIV*AFAEWTQQCPQDPY Trigger: ATAAGGATCCTGTGGGCACTGCTGGGTCCACTCTGCAAATGCCAAGACTATCAAAGGAACGTATTGTCGCTTCTGGCTCCTTCCCAGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| 3UTR-3UTR GCA 90 bp | TGTGTCGGAGTTGGAGGGCTGTCTGGGGTCATGGCAGACGTGCTTCCTCCAGCCTTTTCTGTTCTAACTTaGCAGAAAGATGAGATTCCG | + |
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Preference number: 2 (lower is better) Translates to: CVGVGGLSGVMADVLPPAFSVLT*QKDEIP Trigger: CGGAATCTCATCTTTCTGGCAAGTTAGAACAGAAAA...GGCTGGAGGAAGCACGTCTGCCATGACCCCAGACAGCCCTCCAACTCCGACACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR-3UTR CCA 90 bp | CAACATGTTCCATCACATTCTACCATAGACTTACGGCTGGCTTTGAGTAGCTTTTTGGCATTTGCAGAGTaGACCCAGCAGTGCCCACAG | + |
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Preference number: 2 (lower is better) Translates to: QHVPSHSTIDLRLALSSFLAFAE*TQQCPQ Trigger: CTGTGGGCACTGCTGGGTCCACTCTGCAAATGCCAA...AAAGCTACTCAAAGCCAGCCGTAAGTCTATGGTAGAATGTGATGGAACATGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| 3UTR CAA 90 bp | CTTAGCTTTAACTCTGGCCCAGGCAGATACATCAGGATACATAATTaGTTCATAGATATTACAACAATGATCAGAAATGTTGGTGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: LSFNSGPGRYIRIHN*FIDITTMIRNVGAG Trigger: TCCTGCACCAACATTTCTGATCATTGTTGTAATATCTATGAACAAATTATGTATCCTGATGTATCTGCCTGGGCCAGAGTTAAAGCTAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR CAA 90 bp | CACCAACATGTTCCATCACATTCTACCATAGACTTACGGCTGGCTTaGAGTAGCTTTCAGTTCAAAGTGAAACATGTAAACATATTATAT | + |
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Preference number: 2 (lower is better) Translates to: HQHVPSHSTIDLRLA*SSFQFKVKHVNILY Trigger: ATATAATATGTTTACATGTTTCACTTTGAACTGAAAGCTACTCAAAGCCAGCCGTAAGTCTATGGTAGAATGTGATGGAACATGTTGGTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| 3UTR CCA 72 bp | GTCTTTGTGTCGGAGTTGGAGGGCTGTCTGGGGTCATaGCAGACGTGCTTCCTCCAGCCTCCAGAGCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: VFVSELEGCLGS*QTCFLQPPEPL Trigger: CAAAGGCTCTGGAGGCTGGAGGAAGCACGTCTGCCATGACCCCAGACAGCCCTCCAACTCCGACACAAAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR CCA 72 bp | AAAGCTGCGTCTTTGTGTCGGAGTTGGAGGGCTGTCTaGGGTCATGGCAGACGTGCTTCCTCCAGCCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: KAASLCRSWRAV*GHGRRASSSLQ Trigger: CTGGAGGCTGGAGGAAGCACGTCTGCCATGACCCCAGACAGCCCTCCAACTCCGACACAAAGACGCAGCTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR GCA 72 bp | TCGGAGTTGGAGGGCTGTCTGGGGTCATGGCAGACGTaGTTCCTCCAGCCTCCAGAGCCTTTGTTTCTTTTG | + |
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Preference number: 3 (lower is better) Translates to: SELEGCLGSWQT*FLQPPEPLFLL Trigger: CAAAAGAAACAAAGGCTCTGGAGGCTGGAGGAAGCACGTCTGCCATGACCCCAGACAGCCCTCCAACTCCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR TCA 72 bp | GGCCACTGTCAGAGCCGTTTCGGGAGTGATAGGCGGTaGGGCTACAAGGGCCTGACTGGTTACTACTTAACA | + |
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Preference number: 3 (lower is better) Translates to: GHCQSRFGSDRR*GYKGLTGYYLT Trigger: TGTTAAGTAGTAACCAGTCAGGCCCTTGTAGCCTCACCGCCTATCACTCCCGAAACGGCTCTGACAGTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR GCA 72 bp | AAGGGCCTGACTGGTTACTACTTAACAGGGAAAAGCTaGGTCTTTGTGTCGGAGTTGGAGGGCTGTCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: KGLTGYYLTGKS*VFVSELEGCLG Trigger: CCCCAGACAGCCCTCCAACTCCGACACAAAGACGCAGCTTTTCCCTGTTAAGTAGTAACCAGTCAGGCCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR-3UTR CAA 90 bp | TGTGTCGGAGTTGGAGGGCTGTCTGGGGTCATGGCAGACGTGCTTCCTCCAGCCCCACCAGAATCCAAATaGAATCCTTTCTGTCATCAT | + |
|
Preference number: 3 (lower is better) Translates to: CVGVGGLSGVMADVLPPAPPESK*NPFCHH Trigger: ATGATGACAGAAAGGATTCAATTTGGATTCTGGTGG...GGCTGGAGGAAGCACGTCTGCCATGACCCCAGACAGCCCTCCAACTCCGACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR TCA 72 bp | CCGTCTCACTCTCTAGGACAGCTGGCTGGTGCGGTGTaGCAAGTGAATACTTCGATTCAGGTTTTGTCTCTA | + |
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Preference number: 3 (lower is better) Translates to: PSHSLGQLAGAV*QVNTSIQVLSL Trigger: TAGAGACAAAACCTGAATCGAAGTATTCACTTGTCACACCGCACCAGCCAGCTGTCCTAGAGAGTGAGACGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR TCA 72 bp | CACGGGTGGAGGGTCGTGCTCTGCCATCTTTGTTTCTaGGTTGTTGTTTGGGAGAGATTCCAAGTCCGATAT | + |
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Preference number: 3 (lower is better) Translates to: HGWRVVLCHLCF*VVVWERFQVRY Trigger: ATATCGGACTTGGAATCTCTCCCAAACAACAACTCAGAAACAAAGATGGCAGAGCACGACCCTCCACCCGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR-3UTR CAA 90 bp | GAGTTGTTGTTTGGGAGAGATTCCAAGTCCGATATGGAGCTGCCCGATCCCACGCACCAATGTGTTCTATaGTACAAGCTTCCACCAACA | + |
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Preference number: 3 (lower is better) Translates to: ELLFGRDSKSDMELPDPTHQCVL*YKLPPT Trigger: TGTTGGTGGAAGCTTGTACAATAGAACACATTGGTG...CGTGGGATCGGGCAGCTCCATATCGGACTTGGAATCTCTCCCAAACAACAACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR-3UTR CAA 90 bp | TTCCACCAACATGTTCCATCACATTCTACCATAGACTTACGGCTGGCTTTGAGTGACTTACGGCTGGCTTaGAGTAGCTTTCAGTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: FHQHVPSHSTIDLRLALSDLRLA*SSFQFK Trigger: TTTGAACTGAAAGCTACTCAAAGCCAGCCGTAAGTC...ACTCAAAGCCAGCCGTAAGTCTATGGTAGAATGTGATGGAACATGTTGGTGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| 3UTR GCA 72 bp | TGTATAGCTTCTTTCATGAAATCAATGCAGAAAAACTaGCTAAAAGGTCAGTTTCTTTACCACCAGCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: CIASFMKSMQKN*LKGQFLYHQQA Trigger: GGCCTGCTGGTGGTAAAGAAACTGACCTTTTAGGCAGTTTTTCTGCATTGATTTCATGAAAGAAGCTATACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| 3UTR CCA 72 bp | ACCACCAGAATCCAAATTGAATCCTTTCTGTCATCATaGAAAGGAGGGATACAGACGTCTTTCGATTTTTCT | + |
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Preference number: 3 (lower is better) Translates to: TTRIQIESFLSS*KGGIQTSFDFS Trigger: AGAAAAATCGAAAGACGTCTGTATCCCTCCTTTCCATGATGACAGAAAGGATTCAATTTGGATTCTGGTGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| CDS-3UTR GCA 90 bp | AGTCTTGGCATTTGCAGAGTGGACCCAGCAGTGCCCACAGGATCCTTATTCACGCCAGCAGAATCATCCTaGCAGCTGCCGCCTGCGGGC | + |
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Preference number: 4 (lower is better) Translates to: SLGICRVDPAVPTGSLFTPAESS*QLPPAG Trigger: GCCCGCAGGCGGCAGCTGGCAGGATGATTCTGCTGG...CGTGAATAAGGATCCTGTGGGCACTGCTGGGTCCACTCTGCAAATGCCAAGACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| CDS-3UTR GCA 90 bp | GAGTTGTTGTTTGGGAGAGATTCCAAGTCCGATATGGAGCTGCCCGATCCCACGGCTCAGGATCCTCAGTaGTCGTCAAAGCTCCACTCC | + |
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Preference number: 4 (lower is better) Translates to: ELLFGRDSKSDMELPDPTAQDPQ*SSKLHS Trigger: GGAGTGGAGCTTTGACGAGCACTGAGGATCCTGAGC...CGTGGGATCGGGCAGCTCCATATCGGACTTGGAATCTCTCCCAAACAACAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR CAA 72 bp | TACTTAACAGGGAAAAGCTGCGTCTTTGTGTCGGAGTaGGAGGGCTGTCTGGGGTCATGGCAGACGTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: YLTGKSCVFVSE*EGCLGSWQTCF Trigger: GAAGCACGTCTGCCATGACCCCAGACAGCCCTCCAACTCCGACACAAAGACGCAGCTTTTCCCTGTTAAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR CAA 72 bp | AGGAGCCAGAAGCGACAATACGTTCCTTTGATAGTCTaGGCATTTGCAGAGTGGACCCAGCAGTGCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: RSQKRQYVPLIV*AFAEWTQQCPQ Trigger: CTGTGGGCACTGCTGGGTCCACTCTGCAAATGCCAAGACTATCAAAGGAACGTATTGTCGCTTCTGGCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| CDS-3UTR TCA 90 bp | TCCTGTTCTGCTGCTTCGGGGCTGTCTGGAGCTGTCACTGTGGACAGGGGCTCTAAAAATAGGAGTCTGTaGCATGTTCTGGTATTCCCA | + |
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Preference number: 4 (lower is better) Translates to: SCSAASGLSGAVTVDRGSKNRSL*HVLVFP Trigger: TGGGAATACCAGAACATGTCACAGACTCCTATTTTT...AGAGCCCCTGTCCACAGTGACAGCTCCAGACAGCCCCGAAGCAGCAGAACAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| CDS-3UTR GCA 90 bp | GTGCCCACAGGATCCTTATTCACGTATCTAAGTCTGATATTCTATGTGGTTAGTCCAGCAGAATCATCCTaGCAGCTGCCGCCTGCGGGC | + |
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Preference number: 4 (lower is better) Translates to: VPTGSLFTYLSLIFYVVSPAESS*QLPPAG Trigger: GCCCGCAGGCGGCAGCTGGCAGGATGATTCTGCTGG...ACTAACCACATAGAATATCAGACTTAGATACGTGAATAAGGATCCTGTGGGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| 3UTR CAA 72 bp | GGTCGTGCTCTGCCATCTTTGTTTCTGAGTTGTTGTTaGGGAGAGATTCCAAGTCCGATATGGAGCTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: GRALPSLFLSCC*GEIPSPIWSCP Trigger: CGGGCAGCTCCATATCGGACTTGGAATCTCTCCCAAACAACAACTCAGAAACAAAGATGGCAGAGCACGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| CDS-3UTR GCA 90 bp | TCCTTTGATAGTCTTGGCATTTGCAGAGTGGACCCAGCAGTGCCCACAGGATCCGATCAGAAATGTTGGTaGAGGAATCAGTCCAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: SFDSLGICRVDPAVPTGSDQKCW*RNQSRN Trigger: GTTCCTGGACTGATTCCTGCACCAACATTTCTGATC...GGATCCTGTGGGCACTGCTGGGTCCACTCTGCAAATGCCAAGACTATCAAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CCA 90 bp | CCCAGCAGTGCCCACAGGATCCTTATTCACGTATCTAAGTCTGATATTCTATGTTGCTTCGGGGCTGTCTaGAGCTGTCACTGTGGACAG | + |
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Preference number: 4 (lower is better) Translates to: PSSAHRILIHVSKSDILCCFGAV*SCHCGQ Trigger: CTGTCCACAGTGACAGCTCCAGACAGCCCCGAAGCA...ACATAGAATATCAGACTTAGATACGTGAATAAGGATCCTGTGGGCACTGCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| 3UTR CAA 72 bp | GGAGGGTCGTGCTCTGCCATCTTTGTTTCTGAGTTGTaGTTTGGGAGAGATTCCAAGTCCGATATGGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: GGSCSAIFVSEL*FGRDSKSDMEL Trigger: CAGCTCCATATCGGACTTGGAATCTCTCCCAAACAACAACTCAGAAACAAAGATGGCAGAGCACGACCCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR CAA 72 bp | GGTGGAGGGTCGTGCTCTGCCATCTTTGTTTCTGAGTaGTTGTTTGGGAGAGATTCCAAGTCCGATATGGAG | + |
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Preference number: 4 (lower is better) Translates to: GGGSCSAIFVSE*LFGRDSKSDME Trigger: CTCCATATCGGACTTGGAATCTCTCCCAAACAACAACTCAGAAACAAAGATGGCAGAGCACGACCCTCCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| 3UTR CAA 72 bp | CCTTTCTCACGGGTGGAGGGTCGTGCTCTGCCATCTTaGTTTCTGAGTTGTTGTTTGGGAGAGATTCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: PFSRVEGRALPS*FLSCCLGEIPS Trigger: ACTTGGAATCTCTCCCAAACAACAACTCAGAAACAAAGATGGCAGAGCACGACCCTCCACCCGTGAGAAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164591.3 |
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| CDS-3UTR GCA 90 bp | TTCCACCAACATGTTCCATCACATTCTACCATAGACTTACGGCTGGCTTTGAGTAGGACAGCTGGCTGGTaGGGTGTGACAAGTGAATAC | + |
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Preference number: 4 (lower is better) Translates to: FHQHVPSHSTIDLRLALSRTAGW*GVTSEY Trigger: GTATTCACTTGTCACACCGCACCAGCCAGCTGTCCT...ACTCAAAGCCAGCCGTAAGTCTATGGTAGAATGTGATGGAACATGTTGGTGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR GCA 90 bp | GTGCCCACAGGATCCTTATTCACGTATCTAAGTCTGATATTCTATGTGGTTAGTGCTCAGGATCCTCAGTaGTCGTCAAAGCTCCACTCC | + |
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Preference number: 4 (lower is better) Translates to: VPTGSLFTYLSLIFYVVSAQDPQ*SSKLHS Trigger: GGAGTGGAGCTTTGACGAGCACTGAGGATCCTGAGC...ACTAACCACATAGAATATCAGACTTAGATACGTGAATAAGGATCCTGTGGGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| CDS-3UTR TCA 90 bp | CAATACGTTCCTTTGATAGTCTTGGCATTTGCAGAGTGGACCCAGCAGTGCCCAAAAAATAGGAGTCTGTaGCATGTTCTGGTATTCCCA | + |
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Preference number: 4 (lower is better) Translates to: QYVPLIVLAFAEWTQQCPKNRSL*HVLVFP Trigger: TGGGAATACCAGAACATGTCACAGACTCCTATTTTT...TGGGCACTGCTGGGTCCACTCTGCAAATGCCAAGACTATCAAAGGAACGTATTG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000020188.13 ENSMUST00000164591.3 |
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| CDS-3UTR GCA 90 bp | CTATTGTACAAGCTTCCACCAACATGTTCCATCACATTCTACCATAGACTTACGACGGGTGGAGGGTCGTaGTCTGCCATCTTTGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: LLYKLPPTCSITFYHRLTTGGGS*SAIFVS Trigger: AGAAACAAAGATGGCAGAGCACGACCCTCCACCCGT...CGTAAGTCTATGGTAGAATGTGATGGAACATGTTGGTGGAAGCTTGTACAATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR GCA 90 bp | CAATACGTTCCTTTGATAGTCTTGGCATTTGCAGAGTGGACCCAGCAGTGCCCATTTTCTGTTCTAACTTaGCAGAAAGATGAGATTCCG | + |
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Preference number: 4 (lower is better) Translates to: QYVPLIVLAFAEWTQQCPFSVLT*QKDEIP Trigger: CGGAATCTCATCTTTCTGGCAAGTTAGAACAGAAAA...TGGGCACTGCTGGGTCCACTCTGCAAATGCCAAGACTATCAAAGGAACGTATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CCA 90 bp | CCCAGCAGTGCCCACAGGATCCTTATTCACGTATCTAAGTCTGATATTCTATGTCTACAAGGGCCTGACTaGTTACTACTTAACAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: PSSAHRILIHVSKSDILCLQGPD*LLLNRE Trigger: TTCCCTGTTAAGTAGTAACCAGTCAGGCCCTTGTAG...ACATAGAATATCAGACTTAGATACGTGAATAAGGATCCTGTGGGCACTGCTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR TCA 90 bp | CAACATGTTCCATCACATTCTACCATAGACTTACGGCTGGCTTTGAGTAGCTTTCACCAGAATCCAAATTaGATCCTTTCTGTCATCATG | + |
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Preference number: 4 (lower is better) Translates to: QHVPSHSTIDLRLALSSFHQNPN*ILSVIM Trigger: CATGATGACAGAAAGGATTCAATTTGGATTCTGGTG...AAAGCTACTCAAAGCCAGCCGTAAGTCTATGGTAGAATGTGATGGAACATGTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR TCA 90 bp | ACCATAGACTTACGGCTGGCTTTGAGTAGCTTTCAGTTCAAAGTGAAACATGTATGCCATCTTTGTTTCTaGGTTGTTGTTTGGGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: TIDLRLALSSFQFKVKHVCHLCF*VVVWER Trigger: TCTCTCCCAAACAACAACTCAGAAACAAAGATGGCA...TACATGTTTCACTTTGAACTGAAAGCTACTCAAAGCCAGCCGTAAGTCTATGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CCA 90 bp | TTCCACCAACATGTTCCATCACATTCTACCATAGACTTACGGCTGGCTTTGAGTCTGAAATACAATATCTaGAATCCAGTGTGGATACTG | + |
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Preference number: 4 (lower is better) Translates to: FHQHVPSHSTIDLRLALSLKYNI*NPVWIL Trigger: CAGTATCCACACTGGATTCCAGATATTGTATTTCAG...ACTCAAAGCCAGCCGTAAGTCTATGGTAGAATGTGATGGAACATGTTGGTGGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CCA 90 bp | CTATTGTACAAGCTTCCACCAACATGTTCCATCACATTCTACCATAGACTTACGGTTTTGTCTCTAACGTaGCACTTTTTACCACAGAGA | + |
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Preference number: 4 (lower is better) Translates to: LLYKLPPTCSITFYHRLTVLSLT*HFLPQR Trigger: TCTCTGTGGTAAAAAGTGCCACGTTAGAGACAAAAC...CGTAAGTCTATGGTAGAATGTGATGGAACATGTTGGTGGAAGCTTGTACAATAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CAA 90 bp | CAATACGTTCCTTTGATAGTCTTGGCATTTGCAGAGTGGACCCAGCAGTGCCCAATCTTTGTTTCTGAGTaGTTGTTTGGGAGAGATTCC | + |
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Preference number: 5 (lower is better) Translates to: QYVPLIVLAFAEWTQQCPIFVSE*LFGRDS Trigger: GGAATCTCTCCCAAACAACAACTCAGAAACAAAGAT...TGGGCACTGCTGGGTCCACTCTGCAAATGCCAAGACTATCAAAGGAACGTATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CAA 90 bp | CTATTGTACAAGCTTCCACCAACATGTTCCATCACATTCTACCATAGACTTACGCGTGCTCTGCCATCTTaGTTTCTGAGTTGTTGTTTG | + |
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Preference number: 5 (lower is better) Translates to: LLYKLPPTCSITFYHRLTRALPS*FLSCCL Trigger: CAAACAACAACTCAGAAACAAAGATGGCAGAGCACG...CGTAAGTCTATGGTAGAATGTGATGGAACATGTTGGTGGAAGCTTGTACAATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CAA 90 bp | CAACATGTTCCATCACATTCTACCATAGACTTACGGCTGGCTTTGAGTAGCTTTTTTGTTTCTGAGTTGTaGTTTGGGAGAGATTCCAAG | + |
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Preference number: 5 (lower is better) Translates to: QHVPSHSTIDLRLALSSFFVSEL*FGRDSK Trigger: CTTGGAATCTCTCCCAAACAACAACTCAGAAACAAA...AAAGCTACTCAAAGCCAGCCGTAAGTCTATGGTAGAATGTGATGGAACATGTTG 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CAA 90 bp | CTATTGTACAAGCTTCCACCAACATGTTCCATCACATTCTACCATAGACTTACGCCACCAGAATCCAAATaGAATCCTTTCTGTCATCAT | + |
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Preference number: 5 (lower is better) Translates to: LLYKLPPTCSITFYHRLTPPESK*NPFCHH Trigger: ATGATGACAGAAAGGATTCAATTTGGATTCTGGTGG...CGTAAGTCTATGGTAGAATGTGATGGAACATGTTGGTGGAAGCTTGTACAATAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS-3UTR CAA 90 bp | GTGCCCACAGGATCCTTATTCACGTATCTAAGTCTGATATTCTATGTGGTTAGTGAGCCTTTGTTTCTTTaGAAAGTTCTTCCTGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: VPTGSLFTYLSLIFYVVSEPLFL*KVLPVL Trigger: CAGAACAGGAAGAACTTTCAAAAGAAACAAAGGCTC...ACTAACCACATAGAATATCAGACTTAGATACGTGAATAAGGATCCTGTGGGCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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| CDS CCA 72 bp | TTTGTTCATAGATATTACAACAATGATCAGAAATGTTaGTGCAGGAATCAGTCCAGGAACCCGAATACACCT | + |
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Preference number: 6 (lower is better) Translates to: FVHRYYNNDQKC*CRNQSRNPNTP Trigger: AGGTGTATTCGGGTTCCTGGACTGATTCCTGCACCAACATTTCTGATCATTGTTGTAATATCTATGAACAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020188.13 |
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