Pregenerated sensors for IFNG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055170Ensembl transcript IDs: ENSMUST00000068592.5
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTTCAGGGACAGCCTGTTACTACCTGACACATTCGAGTGCTGTCTaGCCTGCTGTTAAAGCGCTGGCCCGGAGTGTAGACATCTCCTCC | + |
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Preference number: 1 (lower is better) Translates to: LSGTACYYLTHSSAV*PAVKALARSVDISS Trigger: GGAGGAGATGTCTACACTCCGGGCCAGCGCTTTAACAGCAGGCCAGACAGCACTCGAATGTGTCAGGTAGTAACAGGCTGTCCCTGAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR TCA 90 bp | GAATGTTTCTTATTGGTCAGTGAAGTAAAGGTACAAGCTACAATCTaGGTTCAGTCAGCCGCTTGGCTGTCCCCCACCCCCAGATACAAC | + |
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Preference number: 1 (lower is better) Translates to: ECFLLVSEVKVQATI*VQSAAWLSPTPRYN Trigger: GTTGTATCTGGGGGTGGGGGACAGCCAAGCGGCTGACTGAACTCAGATTGTAGCTTGTACCTTTACTTCACTGACCAATAAGAAACATTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR-3UTR CCA 90 bp | AGCTGTATAGGGAAGCACCAGGTGTCAAGTCTCTTGAGACACTGCTTTCTTTCAGTTCAGTCAGCCGCTTaGCTGTCCCCCACCCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: SCIGKHQVSSLLRHCFLSVQSAA*LSPTPR Trigger: TCTGGGGGTGGGGGACAGCCAAGCGGCTGACTGAAC...TGAAAGAAAGCAGTGTCTCAAGAGACTTGACACCTGGTGCTTCCCTATACAGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR-3UTR TCA 90 bp | AGCTGTATAGGGAAGCACCAGGTGTCAAGTCTCTTGAGACACTGCTTTCTTTCAGTACAAGCTACAATCTaGGTTCAGTCAGCCGCTTGG | + |
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Preference number: 2 (lower is better) Translates to: SCIGKHQVSSLLRHCFLSVQATI*VQSAAW Trigger: CCAAGCGGCTGACTGAACTCAGATTGTAGCTTGTAC...TGAAAGAAAGCAGTGTCTCAAGAGACTTGACACCTGGTGCTTCCCTATACAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR-3UTR CCA 90 bp | AGCACCTCCCGGGGTCACTGCAGCTCTGAATGTTTCTTATTGGTCAGTGAAGTACAGAATTATTCTTATTaGGACAATCTCTTCCCCACC | + |
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Preference number: 2 (lower is better) Translates to: STSRGHCSSECFLLVSEVQNYSY*DNLFPT Trigger: GGTGGGGAAGAGATTGTCCCAATAAGAATAATTCTG...TACTTCACTGACCAATAAGAAACATTCAGAGCTGCAGTGACCCCGGGAGGTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR-3UTR CCA 90 bp | CTCTTGAGACACTGCTTTCTTTCAGGGACAGCCTGTTACTACCTGACACATTCGCCGCAATCACAGTCTTaGCTAATTAGTCAGAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: LLRHCFLSGTACYYLTHSPQSQS*LISQKE Trigger: TTCTTTCTGACTAATTAGCCAAGACTGTGATTGCGG...CGAATGTGTCAGGTAGTAACAGGCTGTCCCTGAAAGAAAGCAGTGTCTCAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR-3UTR TCA 90 bp | TCTCTTGAGACACTGCTTTCTTTCAGGGACAGCCTGTTACTACCTGACACATTCTTTCTTATTGGTCAGTaGAGTAAAGGTACAAGCTAC | + |
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Preference number: 2 (lower is better) Translates to: SLETLLSFRDSLLLPDTFFLIGQ*SKGTSY Trigger: GTAGCTTGTACCTTTACTTCACTGACCAATAAGAAA...GAATGTGTCAGGTAGTAACAGGCTGTCCCTGAAAGAAAGCAGTGTCTCAAGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR-3UTR CAA 90 bp | ATCAGCAGCACCTCCCGGGGTCACTGCAGCTCTGAATGTTTCTTATTGGTCAGTAGTTCAGTCAGCCGCTaGGCTGTCCCCCACCCCCAG | + |
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Preference number: 3 (lower is better) Translates to: ISSTSRGHCSSECFLLVSSSVSR*AVPHPQ Trigger: CTGGGGGTGGGGGACAGCCAAGCGGCTGACTGAACT...ACTGACCAATAAGAAACATTCAGAGCTGCAGTGACCCCGGGAGGTGCTGCTGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR CCA 72 bp | ACAGCCTGTTACTACCTGACACATTCGAGTGCTGTCTaGCCTGCTGTTAAAGCGCTGGCCCGGAGTGTAGAC | + |
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Preference number: 3 (lower is better) Translates to: TACYYLTHSSAV*PAVKALARSVD Trigger: GTCTACACTCCGGGCCAGCGCTTTAACAGCAGGCCAGACAGCACTCGAATGTGTCAGGTAGTAACAGGCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR GCA 72 bp | ACATCTCCTCCCATCAGCAGCACCTCCCGGGGTCACTaGAGCTCTGAATGTTTCTTATTGGTCAGTGAAGTA | + |
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Preference number: 3 (lower is better) Translates to: TSPPISSTSRGH*SSECFLLVSEV Trigger: TACTTCACTGACCAATAAGAAACATTCAGAGCTGCAGTGACCCCGGGAGGTGCTGCTGATGGGAGGAGATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR TCA 72 bp | GACACTGCTTTCTTTCAGGGACAGCCTGTTACTACCTaGCACATTCGAGTGCTGTCTGGCCTGCTGTTAAAG | + |
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Preference number: 3 (lower is better) Translates to: DTAFFQGQPVTT*HIRVLSGLLLK Trigger: CTTTAACAGCAGGCCAGACAGCACTCGAATGTGTCAGGTAGTAACAGGCTGTCCCTGAAAGAAAGCAGTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR GCA 72 bp | ATAGGGAAGCACCAGGTGTCAAGTCTCTTGAGACACTaGTTTCTTTCAGGGACAGCCTGTTACTACCTGACA | + |
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Preference number: 3 (lower is better) Translates to: IGKHQVSSLLRH*FLSGTACYYLT Trigger: TGTCAGGTAGTAACAGGCTGTCCCTGAAAGAAAGCAGTGTCTCAAGAGACTTGACACCTGGTGCTTCCCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR TCA 90 bp | ACAGCCTGTTACTACCTGACACATTCGAGTGCTGTCTGGCCTGCTGTTAAAGCGGGACCTGTGGGTTGTTaGCCTCAAACTTGGCAATAC | + |
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Preference number: 4 (lower is better) Translates to: TACYYLTHSSAVWPAVKAGPVGC*PQTWQY Trigger: GTATTGCCAAGTTTGAGGTCAACAACCCACAGGTCC...CGCTTTAACAGCAGGCCAGACAGCACTCGAATGTGTCAGGTAGTAACAGGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR TCA 90 bp | CAGGTGTCAAGTCTCTTGAGACACTGCTTTCTTTCAGGGACAGCCTGTTACTACAGCCAGAAACAGCCATaGGGAAGAGCTGCAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: QVSSLLRHCFLSGTACYYSQKQP*GRAAKP Trigger: TGGCTTTGCAGCTCTTCCTCATGGCTGTTTCTGGCT...GTAGTAACAGGCTGTCCCTGAAAGAAAGCAGTGTCTCAAGAGACTTGACACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR GCA 90 bp | CATTCGGGTGTAGTCACAGTTTTCAGCTGTATAGGGAAGCACCAGGTGTCAAGTGCCATGAGGAAGAGCTaGAAAGCCAAGATGCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: HSGVVTVFSCIGKHQVSSAMRKS*KAKMQC Trigger: ACACTGCATCTTGGCTTTGCAGCTCTTCCTCATGGC...ACTTGACACCTGGTGCTTCCCTATACAGCTGAAAACTGTGACTACACCCGAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR GCA 90 bp | ACAGCCTGTTACTACCTGACACATTCGAGTGCTGTCTGGCCTGCTGTTAAAGCGATGTCACCATCCTTTTaGCAGTTCCTCCAGATATCC | + |
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Preference number: 4 (lower is better) Translates to: TACYYLTHSSAVWPAVKAMSPSF*QFLQIS Trigger: GGATATCTGGAGGAACTGGCAAAAGGATGGTGACAT...CGCTTTAACAGCAGGCCAGACAGCACTCGAATGTGTCAGGTAGTAACAGGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| 3UTR CAA 72 bp | TTCAGCTGTATAGGGAAGCACCAGGTGTCAAGTCTCTaGAGACACTGCTTTCTTTCAGGGACAGCCTGTTAC | + |
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Preference number: 4 (lower is better) Translates to: FSCIGKHQVSSL*RHCFLSGTACY Trigger: GTAACAGGCTGTCCCTGAAAGAAAGCAGTGTCTCAAGAGACTTGACACCTGGTGCTTCCCTATACAGCTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR GCA 90 bp | ACAGCCTGTTACTACCTGACACATTCGAGTGCTGTCTGGCCTGCTGTTAAAGCGGGCAATACTCATGAATaGATCCTTTTTCGCCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: TACYYLTHSSAVWPAVKAGNTHE*ILFRLA Trigger: AGCAAGGCGAAAAAGGATGCATTCATGAGTATTGCC...CGCTTTAACAGCAGGCCAGACAGCACTCGAATGTGTCAGGTAGTAACAGGCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR TCA 90 bp | CAGGTGTCAAGTCTCTTGAGACACTGCTTTCTTTCAGGGACAGCCTGTTACTACACTTGGCAATACTCATaGATGCATCCTTTTTCGCCT | + |
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Preference number: 4 (lower is better) Translates to: QVSSLLRHCFLSGTACYYTWQYS*MHPFSP Trigger: AGGCGAAAAAGGATGCATTCATGAGTATTGCCAAGT...GTAGTAACAGGCTGTCCCTGAAAGAAAGCAGTGTCTCAAGAGACTTGACACCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR TCA 90 bp | AAGTCTCTTGAGACACTGCTTTCTTTCAGGGACAGCCTGTTACTACCTGACACATTGTTGCTGATGGCCTaGTTGTCTTTCAAGACTTCA | + |
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Preference number: 4 (lower is better) Translates to: KSLETLLSFRDSLLLPDTLLLMA*LSFKTS Trigger: TGAAGTCTTGAAAGACAATCAGGCCATCAGCAACAA...TGTGTCAGGTAGTAACAGGCTGTCCCTGAAAGAAAGCAGTGTCTCAAGAGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 90 bp | CAGCGACTCCTTTTCCGCTTCCTGAGGCTGGATTCCGGCAACAGCTaGTGGACCACTCGGATGAGCTCATTGAATGCTTGGCGCTGGACC | + |
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Preference number: 5 (lower is better) Translates to: QRLLFRFLRLDSGNS*WTTRMSSLNAWRWT Trigger: GGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTTGCCGGAATCCAGCCTCAGGAAGCGGAAAAGGAGTCGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 90 bp | CGACTCCTTTTCCGCTTCCTGAGGCTGGATTCCGGCAACAGCTGGTaGACCACTCGGATGAGCTCATTGAATGCTTGGCGCTGGACCTGT | + |
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Preference number: 5 (lower is better) Translates to: RLLFRFLRLDSGNSW*TTRMSSLNAWRWTC Trigger: ACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTTGCCGGAATCCAGCCTCAGGAAGCGGAAAAGGAGTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS GCA 90 bp | GGATTCCGGCAACAGCTGGTGGACCACTCGGATGAGCTCATTGAATaGTTGGCGCTGGACCTGTGGGTTGTTGACCTCAAACTTGGCAAT | + |
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Preference number: 5 (lower is better) Translates to: GFRQQLVDHSDELIE*LALDLWVVDLKLGN Trigger: ATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTTGCCGGAATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 90 bp | TCCGGCAACAGCTGGTGGACCACTCGGATGAGCTCATTGAATGCTTaGCGCTGGACCTGTGGGTTGTTGACCTCAAACTTGGCAATACTC | + |
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Preference number: 5 (lower is better) Translates to: SGNSWWTTRMSSLNA*RWTCGLLTSNLAIL Trigger: GAGTATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTTGCCGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR CAA 90 bp | TACTACCTGACACATTCGAGTGCTGTCTGGCCTGCTGTTAAAGCGCTGGCCCGGTGGACCTGTGGGTTGTaGACCTCAAACTTGGCAATA | + |
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Preference number: 5 (lower is better) Translates to: YYLTHSSAVWPAVKALARWTCGL*TSNLAI Trigger: TATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCA...CCGGGCCAGCGCTTTAACAGCAGGCCAGACAGCACTCGAATGTGTCAGGTAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 90 bp | GTGGACCACTCGGATGAGCTCATTGAATGCTTGGCGCTGGACCTGTaGGTTGTTGACCTCAAACTTGGCAATACTCATGAATGCATCCTT | + |
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Preference number: 5 (lower is better) Translates to: VDHSDELIECLALDL*VVDLKLGNTHECIL Trigger: AAGGATGCATTCATGAGTATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 90 bp | AACAGCTGGTGGACCACTCGGATGAGCTCATTGAATGCTTGGCGCTaGACCTGTGGGTTGTTGACCTCAAACTTGGCAATACTCATGAAT | + |
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Preference number: 5 (lower is better) Translates to: NSWWTTRMSSLNAWR*TCGLLTSNLAILMN Trigger: ATTCATGAGTATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR CAA 90 bp | CTCTTGAGACACTGCTTTCTTTCAGGGACAGCCTGTTACTACCTGACACATTCGGCATCCTTTTTCGCCTaGCTGTTGCTGAAGAAGGTA | + |
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Preference number: 5 (lower is better) Translates to: LLRHCFLSGTACYYLTHSASFFA*LLLKKV Trigger: TACCTTCTTCAGCAACAGCAAGGCGAAAAAGGATGC...CGAATGTGTCAGGTAGTAACAGGCTGTCCCTGAAAGAAAGCAGTGTCTCAAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS-3UTR CAA 90 bp | AGCTGTATAGGGAAGCACCAGGTGTCAAGTCTCTTGAGACACTGCTTTCTTTCACATGTCACCATCCTTTaGCCAGTTCCTCCAGATATC | + |
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Preference number: 5 (lower is better) Translates to: SCIGKHQVSSLLRHCFLSHVTIL*PVPPDI Trigger: GATATCTGGAGGAACTGGCAAAAGGATGGTGACATG...TGAAAGAAAGCAGTGTCTCAAGAGACTTGACACCTGGTGCTTCCCTATACAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 72 bp | TTCCGCTTCCTGAGGCTGGATTCCGGCAACAGCTGGTaGACCACTCGGATGAGCTCATTGAATGCTTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: FRFLRLDSGNSW*TTRMSSLNAWR Trigger: GCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTTGCCGGAATCCAGCCTCAGGAAGCGGAA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 72 bp | CTTTTCCGCTTCCTGAGGCTGGATTCCGGCAACAGCTaGTGGACCACTCGGATGAGCTCATTGAATGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: LFRFLRLDSGNS*WTTRMSSLNAW Trigger: CCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTTGCCGGAATCCAGCCTCAGGAAGCGGAAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS GCA 72 bp | CAACAGCTGGTGGACCACTCGGATGAGCTCATTGAATaGTTGGCGCTGGACCTGTGGGTTGTTGACCTCAAA | + |
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Preference number: 6 (lower is better) Translates to: QQLVDHSDELIE*LALDLWVVDLK Trigger: TTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 72 bp | AGCTGGTGGACCACTCGGATGAGCTCATTGAATGCTTaGCGCTGGACCTGTGGGTTGTTGACCTCAAACTTG | + |
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Preference number: 6 (lower is better) Translates to: SWWTTRMSSLNA*RWTCGLLTSNL Trigger: CAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CAA 72 bp | CAGCTGGTGGACCACTCGGATGAGCTCATTGAATGCTaGGCGCTGGACCTGTGGGTTGTTGACCTCAAACTT | + |
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Preference number: 6 (lower is better) Translates to: QLVDHSDELIEC*ALDLWVVDLKL Trigger: AAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CAA 90 bp | TTCCGGCAACAGCTGGTGGACCACTCGGATGAGCTCATTGAATGCTaGGCGCTGGACCTGTGGGTTGTTGACCTCAAACTTGGCAATACT | + |
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Preference number: 6 (lower is better) Translates to: FRQQLVDHSDELIEC*ALDLWVVDLKLGNT Trigger: AGTATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCACCAGCTGTTGCCGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CCA 72 bp | TGGACCACTCGGATGAGCTCATTGAATGCTTGGCGCTaGACCTGTGGGTTGTTGACCTCAAACTTGGCAATA | + |
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Preference number: 6 (lower is better) Translates to: WTTRMSSLNAWR*TCGLLTSNLAI Trigger: TATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGTGGTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CAA 90 bp | ACTCGGATGAGCTCATTGAATGCTTGGCGCTGGACCTGTGGGTTGTaGACCTCAAACTTGGCAATACTCATGAATGCATCCTTTTTCGCC | + |
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Preference number: 6 (lower is better) Translates to: TRMSSLNAWRWTCGL*TSNLAILMNASFFA Trigger: GGCGAAAAAGGATGCATTCATGAGTATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCTCATCCGAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CAA 72 bp | AGCTCATTGAATGCTTGGCGCTGGACCTGTGGGTTGTaGACCTCAAACTTGGCAATACTCATGAATGCATCC | + |
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Preference number: 6 (lower is better) Translates to: SSLNAWRWTCGL*TSNLAILMNAS Trigger: GGATGCATTCATGAGTATTGCCAAGTTTGAGGTCAACAACCCACAGGTCCAGCGCCAAGCATTCAATGAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS TCA 72 bp | CGCCTTGCTGTTGCTGAAGAAGGTAGTAATCAGGTGTaGTTCAATGACGCTTATGTTGTTGCTGATGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: RLAVAEEGSNQV*FNDAYVVADGL Trigger: CAGGCCATCAGCAACAACATAAGCGTCATTGAATCACACCTGATTACTACCTTCTTCAGCAACAGCAAGGCG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS GCA 72 bp | ATCTGGCTCTGCAGGATTTTCATGTCACCATCCTTTTaGCAGTTCCTCCAGATATCCAAGAAGAGACTCTTT | + |
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Preference number: 6 (lower is better) Translates to: IWLCRIFMSPSF*QFLQISKKRLF Trigger: AAAGAGTCTCTTCTTGGATATCTGGAGGAACTGGCAAAAGGATGGTGACATGAAAATCCTGCAGAGCCAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS GCA 72 bp | TGGGTTGTTGACCTCAAACTTGGCAATACTCATGAATaGATCCTTTTTCGCCTTGCTGTTGCTGAAGAAGGT | + |
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Preference number: 6 (lower is better) Translates to: WVVDLKLGNTHE*ILFRLAVAEEG Trigger: ACCTTCTTCAGCAACAGCAAGGCGAAAAAGGATGCATTCATGAGTATTGCCAAGTTTGAGGTCAACAACCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CAA 72 bp | AATCTGGCTCTGCAGGATTTTCATGTCACCATCCTTTaGCCAGTTCCTCCAGATATCCAAGAAGAGACTCTT | + |
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Preference number: 6 (lower is better) Translates to: NLALQDFHVTIL*PVPPDIQEETL Trigger: AAGAGTCTCTTCTTGGATATCTGGAGGAACTGGCAAAAGGATGGTGACATGAAAATCCTGCAGAGCCAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CAA 90 bp | GAAAGAGATAATCTGGCTCTGCAGGATTTTCATGTCACCATCCTTTaGCCAGTTCCTCCAGATATCCAAGAAGAGACTCTTTTCTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: ERDNLALQDFHVTIL*PVPPDIQEETLFFH Trigger: GTGGAAGAAAAGAGTCTCTTCTTGGATATCTGGAGGAACTGGCAAAAGGATGGTGACATGAAAATCCTGCAGAGCCAGATTATCTCTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CAA 72 bp | GCAATACTCATGAATGCATCCTTTTTCGCCTTGCTGTaGCTGAAGAAGGTAGTAATCAGGTGTGATTCAATG | + |
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Preference number: 6 (lower is better) Translates to: AILMNASFFALL*LKKVVIRCDSM Trigger: CATTGAATCACACCTGATTACTACCTTCTTCAGCAACAGCAAGGCGAAAAAGGATGCATTCATGAGTATTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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| CDS CAA 72 bp | AACTTGGCAATACTCATGAATGCATCCTTTTTCGCCTaGCTGTTGCTGAAGAAGGTAGTAATCAGGTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: NLAILMNASFFA*LLLKKVVIRCD Trigger: ATCACACCTGATTACTACCTTCTTCAGCAACAGCAAGGCGAAAAAGGATGCATTCATGAGTATTGCCAAGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068592.5 |
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