Pregenerated sensors for IFNE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045364Ensembl transcript IDs: ENSMUST00000056014.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCGTGGATCCTCCTGAAGTATGCTTTAATCTGTAACCTAAGGTTCTaGGCACTCGAGCCCCCACTCTTCTGCGCTGCGTTCAGTCCACCC | + |
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Preference number: 5 (lower is better) Translates to: SWILLKYALICNLRF*ALEPPLFCAAFSPP Trigger: GGGTGGACTGAACGCAGCGCAGAAGAGTGGGGGCTCGAGTGCGCAGAACCTTAGGTTACAGATTAAAGCATACTTCAGGAGGATCCACGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS CCA 90 bp | CTGCTCAGCCATGTTGTGAACCTGAACACAAAGAACATACAGCGGTaGATTTCTGTCTGGACAATGATCCAGGCACAGCTGCTGTACCTT | + |
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Preference number: 5 (lower is better) Translates to: LLSHVVNLNTKNIQR*ISVWTMIQAQLLYL Trigger: AAGGTACAGCAGCTGTGCCTGGATCATTGTCCAGACAGAAATCCACCGCTGTATGTTCTTTGTGTTCAGGTTCACAACATGGCTGAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS CCA 90 bp | GGCAAAGGTTTCAGTAGTTGTAGGCTTTCTCTGTTCATCCACAATTaGAAGGGAATCCGTTTCGGTTCTAGGGAGAAGATAGTGGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: GKGFSSCRLSLFIHN*KGIRFGSREKIVEE Trigger: TTCTTCCACTATCTTCTCCCTAGAACCGAAACGGATTCCCTTCCAATTGTGGATGAACAGAGAAAGCCTACAACTACTGAAACCTTTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS TCA 72 bp | GCCCCCACTCTTCTGCGCTGCGTTCAGTCCACCCAGTaGCTCCACGTATTCCAGCTGCCGGTGAAGCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: APTLLRCVQSTQ*LHVFQLPVKRS Trigger: GCTGCGCTTCACCGGCAGCTGGAATACGTGGAGTCACTGGGTGGACTGAACGCAGCGCAGAAGAGTGGGGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS CAA 90 bp | GATCTGCTGAAGGATCTCGTGCACAACAGCCAGCACCTGTCCCTCTaGGTACTGGTGAGGACTCACAGGCTGCTGAGGAAGCAGGAAATT | + |
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Preference number: 6 (lower is better) Translates to: DLLKDLVHNSQHLSL*VLVRTHRLLRKQEI Trigger: AATTTCCTGCTTCCTCAGCAGCCTGTGAGTCCTCACCAGTACCAAGAGGGACAGGTGCTGGCTGTTGTGCACGAGATCCTTCAGCAGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS GCA 72 bp | CTCCTGAAGTATGCTTTAATCTGTAACCTAAGGTTCTaGGCACTCGAGCCCCCACTCTTCTGCGCTGCGTTC | + |
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Preference number: 6 (lower is better) Translates to: LLKYALICNLRF*ALEPPLFCAAF Trigger: GAACGCAGCGCAGAAGAGTGGGGGCTCGAGTGCGCAGAACCTTAGGTTACAGATTAAAGCATACTTCAGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS CCA 72 bp | GGAAGCAGGAAATTCTTCCTGTGTGCTAGACACTGCTaGACTGACGAGCTTGGCAAAGGTTTCAGTAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: GSRKFFLCARHC*TDELGKGFSSC Trigger: ACAACTACTGAAACCTTTGCCAAGCTCGTCAGTCCAGCAGTGTCTAGCACACAGGAAGAATTTCCTGCTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS CAA 72 bp | TCTTCCTGTGTGCTAGACACTGCTGGACTGACGAGCTaGGCAAAGGTTTCAGTAGTTGTAGGCTTTCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: SSCVLDTAGLTS*AKVSVVVGFLC Trigger: ACAGAGAAAGCCTACAACTACTGAAACCTTTGCCAAGCTCGTCAGTCCAGCAGTGTCTAGCACACAGGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS CAA 90 bp | GCAGGAAATTCTTCCTGTGTGCTAGACACTGCTGGACTGACGAGCTaGGCAAAGGTTTCAGTAGTTGTAGGCTTTCTCTGTTCATCCACA | + |
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Preference number: 6 (lower is better) Translates to: AGNSSCVLDTAGLTS*AKVSVVVGFLCSST Trigger: TGTGGATGAACAGAGAAAGCCTACAACTACTGAAACCTTTGCCAAGCTCGTCAGTCCAGCAGTGTCTAGCACACAGGAAGAATTTCCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS CCA 72 bp | CATGTTGTGAACCTGAACACAAAGAACATACAGCGGTaGATTTCTGTCTGGACAATGATCCAGGCACAGCTG | + |
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Preference number: 6 (lower is better) Translates to: HVVNLNTKNIQR*ISVWTMIQAQL Trigger: CAGCTGTGCCTGGATCATTGTCCAGACAGAAATCCACCGCTGTATGTTCTTTGTGTTCAGGTTCACAACATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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| CDS CAA 90 bp | GTGGATTTCTGTCTGGACAATGATCCAGGCACAGCTGCTGTACCTTaGGTTTTCCAAGTAATCGTGGATCCTCCTGAAGTATGCTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: VDFCLDNDPGTAAVP*VFQVIVDPPEVCFN Trigger: ATTAAAGCATACTTCAGGAGGATCCACGATTACTTGGAAAACCAAAGGTACAGCAGCTGTGCCTGGATCATTGTCCAGACAGAAATCCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056014.3 |
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