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Pregenerated sensors for IFNB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048806

Ensembl transcript IDs: ENSMUST00000055671.5

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp TACCAGTCCCAGAGTCCGCCTCTGATGCTTAAAGGTTaGCTGCAACCACCACTCATTCTGAGGCATCAACTG +
Preference number: 3 (lower is better)
Translates to: YQSQSPPLMLKG*LQPPLILRHQL
Trigger: CAGTTGATGCCTCAGAATGAGTGGTGGTTGCAGGCAACCTTTAAGCATCAGAGGCGGACTCTGGGACTGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
3UTR TCA 72 bp TGCAGTAGATTCACTACCAGTCCCAGAGTCCGCCTCTaGTGCTTAAAGGTTGCCTGCAACCACCACTCATTC +
Preference number: 3 (lower is better)
Translates to: CSRFTTSPRVRL*CLKVACNHHSF
Trigger: GAATGAGTGGTGGTTGCAGGCAACCTTTAAGCATCAGAGGCGGACTCTGGGACTGGTAGTGAATCTACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS-3UTR TCA 90 bp CAGAGTCCGCCTCTGATGCTTAAAGGTTGCCTGCAACCACCACTCATTCTGAGGTGCTCCAGGAGCTCCTaGCATTTCCGAATGTTCGTC +
Preference number: 4 (lower is better)
Translates to: QSPPLMLKGCLQPPLILRCSRSS*HFRMFV
Trigger: GACGAACATTCGGAAATGTCAGGAGCTCCTGGAGCA...CCTCAGAATGAGTGGTGGTTGCAGGCAACCTTTAAGCATCAGAGGCGGACTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS-3UTR CCA 90 bp CAGAGTCCGCCTCTGATGCTTAAAGGTTGCCTGCAACCACCACTCATTCTGAGGACAAGAAAGACATTCTaGAGCATCTCTTGGATGGCA +
Preference number: 4 (lower is better)
Translates to: QSPPLMLKGCLQPPLILRTRKTF*SISWMA
Trigger: TGCCATCCAAGAGATGCTCCAGAATGTCTTTCTTGT...CCTCAGAATGAGTGGTGGTTGCAGGCAACCTTTAAGCATCAGAGGCGGACTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS-3UTR GCA 90 bp AGTCCGCCTCTGATGCTTAAAGGTTGCCTGCAACCACCACTCATTCTGAGGCATGTCAATCTTTCCTCTTaGTTTTCCTCTAGTACTGTC +
Preference number: 4 (lower is better)
Translates to: SPPLMLKGCLQPPLILRHVNLSS*FSSSTV
Trigger: GACAGTACTAGAGGAAAAGCAAGAGGAAAGATTGAC...ATGCCTCAGAATGAGTGGTGGTTGCAGGCAACCTTTAAGCATCAGAGGCGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS-3UTR CCA 90 bp TTTGACCTTTCAAATGCAGTAGATTCACTACCAGTCCCAGAGTCCGCCTCTGATGGAGCATCTCTTGGATaGCAAAGGCAGTGTAACTCT +
Preference number: 4 (lower is better)
Translates to: FDLSNAVDSLPVPESASDGASLG*QRQCNS
Trigger: AGAGTTACACTGCCTTTGCCATCCAAGAGATGCTCC...ATCAGAGGCGGACTCTGGGACTGGTAGTGAATCTACTGCATTTGAAAGGTCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS-3UTR CAA 90 bp CAGAGTCCGCCTCTGATGCTTAAAGGTTGCCTGCAACCACCACTCATTCTGAGGTCAAGTGGAGAGCAGTaGAGGACATCTCCCACGTCA +
Preference number: 5 (lower is better)
Translates to: QSPPLMLKGCLQPPLILRSSGEQ*RTSPTS
Trigger: TGACGTGGGAGATGTCCTCAACTGCTCTCCACTTGA...CCTCAGAATGAGTGGTGGTTGCAGGCAACCTTTAAGCATCAGAGGCGGACTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS-3UTR CAA 90 bp TCCTTTGACCTTTCAAATGCAGTAGATTCACTACCAGTCCCAGAGTCCGCCTCTATTCTGGAGCATCTCTaGGATGGCAAAGGCAGTGTA +
Preference number: 5 (lower is better)
Translates to: SFDLSNAVDSLPVPESASILEHL*DGKGSV
Trigger: TACACTGCCTTTGCCATCCAAGAGATGCTCCAGAAT...AGAGGCGGACTCTGGGACTGGTAGTGAATCTACTGCATTTGAAAGGTCAAAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS-3UTR CAA 90 bp CCTCTGATGCTTAAAGGTTGCCTGCAACCACCACTCATTCTGAGGCATCAACTGCCAGTGCTGGAGAAATaGTTTCTGAAGACAAGAAAG +
Preference number: 5 (lower is better)
Translates to: PLMLKGCLQPPLILRHQLPVLEK*FLKTRK
Trigger: CTTTCTTGTCTTCAGAAACAATTTCTCCAGCACTGG...CAGTTGATGCCTCAGAATGAGTGGTGGTTGCAGGCAACCTTTAAGCATCAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS GCA 90 bp GTTTCTGGTAAGTCTTCGAATGATGAGAAAGTTCCTGAAGATCTCTaGTCGGACCACCATCCAGGCGTAGCTGTTGTACTTCATGAGTTT +
Preference number: 5 (lower is better)
Translates to: VSGKSSNDEKVPEDL*SDHHPGVAVVLHEF
Trigger: AAACTCATGAAGTACAACAGCTACGCCTGGATGGTGGTCCGAGCAGAGATCTTCAGGAACTTTCTCATCATTCGAAGACTTACCAGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS CCA 90 bp TCCTCTTGCTTTTCCTCTAGTACTGTCTTCAGAAACACTGTCTGCTaGTGGAGTTCATCCAGGAGACGTACAACAATAGTCTCATTCCAC +
Preference number: 5 (lower is better)
Translates to: SSCFSSSTVFRNTVC*WSSSRRRTTIVSFH
Trigger: GTGGAATGAGACTATTGTTGTACGTCTCCTGGATGAACTCCACCAGCAGACAGTGTTTCTGAAGACAGTACTAGAGGAAAAGCAAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS CAA 72 bp GCACCCTCCAGTAATAGCTCTTCAAGTGGAGAGCAGTaGAGGACATCTCCCACGTCAATCTTTCCTCTTGCT +
Preference number: 6 (lower is better)
Translates to: APSSNSSSSGEQ*RTSPTSIFPLA
Trigger: AGCAAGAGGAAAGATTGACGTGGGAGATGTCCTCAACTGCTCTCCACTTGAAGAGCTATTACTGGAGGGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS TCA 72 bp CACCCTCCAGTAATAGCTCTTCAAGTGGAGAGCAGTTaGGGACATCTCCCACGTCAATCTTTCCTCTTGCTT +
Preference number: 6 (lower is better)
Translates to: HPPVIALQVESS*GHLPRQSFLLL
Trigger: AAGCAAGAGGAAAGATTGACGTGGGAGATGTCCTCAACTGCTCTCCACTTGAAGAGCTATTACTGGAGGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS CAA 90 bp GGTACCTTTGCACCCTCCAGTAATAGCTCTTCAAGTGGAGAGCAGTaGAGGACATCTCCCACGTCAATCTTTCCTCTTGCTTTTCCTCTA +
Preference number: 6 (lower is better)
Translates to: GTFAPSSNSSSSGEQ*RTSPTSIFPLAFPL
Trigger: TAGAGGAAAAGCAAGAGGAAAGATTGACGTGGGAGATGTCCTCAACTGCTCTCCACTTGAAGAGCTATTACTGGAGGGTGCAAAGGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS GCA 72 bp AAGTCTTCGAATGATGAGAAAGTTCCTGAAGATCTCTaGTCGGACCACCATCCAGGCGTAGCTGTTGTACTT +
Preference number: 6 (lower is better)
Translates to: KSSNDEKVPEDL*SDHHPGVAVVL
Trigger: AAGTACAACAGCTACGCCTGGATGGTGGTCCGAGCAGAGATCTTCAGGAACTTTCTCATCATTCGAAGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS CAA 72 bp GGCGTAGCTGTTGTACTTCATGAGTTTAAGGTACCTTaGCACCCTCCAGTAATAGCTCTTCAAGTGGAGAGC +
Preference number: 6 (lower is better)
Translates to: GVAVVLHEFKVP*HPPVIALQVES
Trigger: GCTCTCCACTTGAAGAGCTATTACTGGAGGGTGCAAAGGTACCTTAAACTCATGAAGTACAACAGCTACGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS GCA 72 bp GCAGTTGAGGACATCTCCCACGTCAATCTTTCCTCTTaGTTTTCCTCTAGTACTGTCTTCAGAAACACTGTC +
Preference number: 6 (lower is better)
Translates to: AVEDISHVNLSS*FSSSTVFRNTV
Trigger: GACAGTGTTTCTGAAGACAGTACTAGAGGAAAAGCAAGAGGAAAGATTGACGTGGGAGATGTCCTCAACTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5
CDS CAA 90 bp GGAGAAATTGTTTCTGAAGACAAGAAAGACATTCTGGAGCATCTCTaGGATGGCAAAGGCAGTGTAACTCTTCTGCATCTTCTCCGTCAT +
Preference number: 6 (lower is better)
Translates to: GEIVSEDKKDILEHL*DGKGSVTLLHLLRH
Trigger: ATGACGGAGAAGATGCAGAAGAGTTACACTGCCTTTGCCATCCAAGAGATGCTCCAGAATGTCTTTCTTGTCTTCAGAAACAATTTCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055671.5