Pregenerated sensors for IFNAB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000100079Ensembl transcript IDs: ENSMUST00000071378.6
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTGAATGGATGGAGAACAAATGTCTTTACAGATTTACAGAGCATTaGTCATTACTGCAGAAGCATCTAGGCAACTTGTTTCAATTCATG | + |
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Preference number: 1 (lower is better) Translates to: SEWMENKCLYRFTEH*SLLQKHLGNLFQFM Trigger: CATGAATTGAAACAAGTTGCCTAGATGCTTCTGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAGACATTTGTTCTCCATCCATTCAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| 3UTR TCA 72 bp | ACTTGTTTCAATTCATGTCAAAATGACTGGTATCTTTaGGATGGTAGAATCTGGGCAGAGAGGTGCAGTGTC | + |
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Preference number: 3 (lower is better) Translates to: TCFNSCQNDWYL*DGRIWAERCSV Trigger: GACACTGCACCTCTCTGCCCAGATTCTACCATCTCAAAGATACCAGTCATTTTGACATGAATTGAAACAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| 3UTR GCA 72 bp | ATGGAGAACAAATGTCTTTACAGATTTACAGAGCATTaGTCATTACTGCAGAAGCATCTAGGCAACTTGTTT | + |
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Preference number: 3 (lower is better) Translates to: MENKCLYRFTEH*SLLQKHLGNLF Trigger: AAACAAGTTGCCTAGATGCTTCTGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAGACATTTGTTCTCCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR TCA 90 bp | GAGCATTGCTCATTACTGCAGAAGCATCTAGGCAACTTGTTTCAATTCATGTCATCCAGACTTCTGCTCTaGCCACTTCCCAGGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: EHCSLLQKHLGNLFQFMSSRLLL*PLPRHR Trigger: CCTGTGCCTGGGAAGTGGTCAGAGCAGAAGTCTGGA...TGACATGAATTGAAACAAGTTGCCTAGATGCTTCTGCAGTAATGAGCAATGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR GCA 90 bp | ATGGATGGAGAACAAATGTCTTTACAGATTTACAGAGCATTGCTCATTACTGCAGGCTCTCCAGACTTCTaGTCTGACCACTTCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: MDGEQMSLQIYRALLITAGSPDF*SDHFPG Trigger: GCCTGGGAAGTGGTCAGAGCAGAAGTCTGGAGAGCC...TGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAGACATTTGTTCTCCATCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR CCA 90 bp | CTTGTTTCAATTCATGTCAAAATGACTGGTATCTTTGAGATGGTAGAATCTGGGGCATCCACCTTCTCCTaGGGGAATCCGAAGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: LVSIHVKMTGIFEMVESGASTFS*GNPKSF Trigger: GAAGGACTTCGGATTCCCCCAGGAGAAGGTGGATGC...CCCAGATTCTACCATCTCAAAGATACCAGTCATTTTGACATGAATTGAAACAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR CCA 90 bp | ATGGATGGAGAACAAATGTCTTTACAGATTTACAGAGCATTGCTCATTACTGCAAGGGTCAGCATCTGCTaGGTCAGCTCAGTCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: MDGEQMSLQIYRALLITARVSIC*VSSVRT Trigger: TGTCCTGACTGAGCTGACCCAGCAGATGCTGACCCT...TGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAGACATTTGTTCTCCATCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR TCA 90 bp | GTTTCAATTCATGTCAAAATGACTGGTATCTTTGAGATGGTAGAATCTGGGCAGATGAAGCCTTTGATGTaGAGAGGGTCAGCATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VSIHVKMTGIFEMVESGQMKPLM*RGSASA Trigger: AGCAGATGCTGACCCTCTTCACATCAAAGGCTTCAT...CTGCCCAGATTCTACCATCTCAAAGATACCAGTCATTTTGACATGAATTGAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR GCA 90 bp | CTTGTTTCAATTCATGTCAAAATGACTGGTATCTTTGAGATGGTAGAATCTGGGTTCAGGTCATTGAGTTaGTGGTGGAGGTCATTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LVSIHVKMTGIFEMVESGFRSLS*WWRSLQ Trigger: CTGCAATGACCTCCACCAGCAACTCAATGACCTGAA...CCCAGATTCTACCATCTCAAAGATACCAGTCATTTTGACATGAATTGAAACAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR CCA 90 bp | CTTGTTTCAATTCATGTCAAAATGACTGGTATCTTTGAGATGGTAGAATCTGGGAGGTCATTGAGTTGCTaGTGGAGGTCATTGCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: LVSIHVKMTGIFEMVESGRSLSC*WRSLQN Trigger: ATTCTGCAATGACCTCCACCAGCAACTCAATGACCT...CCCAGATTCTACCATCTCAAAGATACCAGTCATTTTGACATGAATTGAAACAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| 3UTR CAA 72 bp | GATGGAGAACAAATGTCTTTACAGATTTACAGAGCATaGCTCATTACTGCAGAAGCATCTAGGCAACTTGTT | + |
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Preference number: 4 (lower is better) Translates to: DGEQMSLQIYRA*LITAEASRQLV Trigger: AACAAGTTGCCTAGATGCTTCTGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAGACATTTGTTCTCCATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR CAA 90 bp | TGTCTTTACAGATTTACAGAGCATTGCTCATTACTGCAGAAGCATCTAGGCAACTCTCCTCACTCAGACTaGCCAGCAACTTGGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: CLYRFTEHCSLLQKHLGNSPHSD*PATWLR Trigger: CCTCAGCCAAGTTGCTGGCAAGTCTGAGTGAGGAGA...GTTGCCTAGATGCTTCTGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR CAA 90 bp | TGTCTTTACAGATTTACAGAGCATTGCTCATTACTGCAGAAGCATCTAGGCAACTGCTGGTGGAGGTCATaGCAGAATGAGTCTAGTAGG | + |
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Preference number: 5 (lower is better) Translates to: CLYRFTEHCSLLQKHLGNCWWRS*QNESSR Trigger: CCTACTAGACTCATTCTGCAATGACCTCCACCAGCA...GTTGCCTAGATGCTTCTGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR CAA 90 bp | GCATCTAGGCAACTTGTTTCAATTCATGTCAAAATGACTGGTATCTTTGAGATGAGACTTGCCAGCAACTaGGCTGAGGAAGACAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: ASRQLVSIHVKMTGIFEMRLASN*AEEDRA Trigger: AGCCCTGTCTTCCTCAGCCAAGTTGCTGGCAAGTCT...CATCTCAAAGATACCAGTCATTTTGACATGAATTGAAACAAGTTGCCTAGATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR CAA 90 bp | CTTTACAGATTTACAGAGCATTGCTCATTACTGCAGAAGCATCTAGGCAACTTGTTTCAGGTCATTGAGTaGCTGGTGGAGGTCATTGCA | + |
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Preference number: 5 (lower is better) Translates to: LYRFTEHCSLLQKHLGNLFQVIE*LVEVIA Trigger: TGCAATGACCTCCACCAGCAACTCAATGACCTGAAA...CAAGTTGCCTAGATGCTTCTGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS-3UTR CAA 90 bp | ATGGATGGAGAACAAATGTCTTTACAGATTTACAGAGCATTGCTCATTACTGCACAGGTTTTCAGGTCATaGAGTTGCTGGTGGAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: MDGEQMSLQIYRALLITAQVFRS*SCWWRS Trigger: TGACCTCCACCAGCAACTCAATGACCTGAAAACCTG...TGCAGTAATGAGCAATGCTCTGTAAATCTGTAAAGACATTTGTTCTCCATCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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| CDS TCA 72 bp | CTCCTTCTCCTCACTCAGACTTGCCAGCAACTTGGCTaGGGAAGACAGGGCTCTCCAGACTTCTGCTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: LLLLTQTCQQLG*GRQGSPDFCSD Trigger: GTCAGAGCAGAAGTCTGGAGAGCCCTGTCTTCCTCAGCCAAGTTGCTGGCAAGTCTGAGTGAGGAGAAGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071378.6 |
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