Pregenerated sensors for IFNA9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095270

Ensembl transcript IDs: ENSMUST00000102807.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TGGGAGTCTTCCTGGGTCAGGGGCAGTTCCTTCATCCCGACCAGCTaGATCAGACAGCCTTGCAGGTCATTGAGCAGCTGGTGGAGGCCA	+
Preference number: 5 (lower is better) Translates to: WESSWVRGSSFIPTS*IRQPCRSLSSWWRP Trigger: TGGCCTCCACCAGCTGCTCAATGACCTGCAAGGCTGTCTGATGCAGCTGGTCGGGATGAAGGAACTGCCCCTGACCCAGGAAGACTCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS GCA 90 bp	GTCAGGGGCAGTTCCTTCATCCCGACCAGCTGCATCAGACAGCCTTaGAGGTCATTGAGCAGCTGGTGGAGGCCAGTGCAGAATGAGTCT	+
Preference number: 5 (lower is better) Translates to: VRGSSFIPTSCIRQP*RSLSSWWRPVQNES Trigger: AGACTCATTCTGCACTGGCCTCCACCAGCTGCTCAATGACCTGCAAGGCTGTCTGATGCAGCTGGTCGGGATGAAGGAACTGCCCCTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS CCA 90 bp	GTGATCCTGTGGAAATATTTCTTCATAGCCAGCTGGGAGTCTTCCTaGGTCAGGGGCAGTTCCTTCATCCCGACCAGCTGCATCAGACAG	+
Preference number: 5 (lower is better) Translates to: VILWKYFFIASWESS*VRGSSFIPTSCIRQ Trigger: CTGTCTGATGCAGCTGGTCGGGATGAAGGAACTGCCCCTGACCCAGGAAGACTCCCAGCTGGCTATGAAGAAATATTTCCACAGGATCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS CCA 90 bp	CTCAGGTACACAGTGATCCTGTGGAAATATTTCTTCATAGCCAGCTaGGAGTCTTCCTGGGTCAGGGGCAGTTCCTTCATCCCGACCAGC	+
Preference number: 5 (lower is better) Translates to: LRYTVILWKYFFIAS*ESSWVRGSSFIPTS Trigger: GCTGGTCGGGATGAAGGAACTGCCCCTGACCCAGGAAGACTCCCAGCTGGCTATGAAGAAATATTTCCACAGGATCACTGTGTACCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS CCA 90 bp	GCACAGGGGCTGTGTTTCTTCTCTCTCAGGTACACAGTGATCCTGTaGAAATATTTCTTCATAGCCAGCTGGGAGTCTTCCTGGGTCAGG	+
Preference number: 5 (lower is better) Translates to: AQGLCFFSLRYTVIL*KYFFIASWESSWVR Trigger: CCTGACCCAGGAAGACTCCCAGCTGGCTATGAAGAAATATTTCCACAGGATCACTGTGTACCTGAGAGAGAAGAAACACAGCCCCTGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS GCA 72 bp	TCCTGGGTCAGGGGCAGTTCCTTCATCCCGACCAGCTaGATCAGACAGCCTTGCAGGTCATTGAGCAGCTGG	+
Preference number: 6 (lower is better) Translates to: SWVRGSSFIPTS*IRQPCRSLSSW Trigger: CCAGCTGCTCAATGACCTGCAAGGCTGTCTGATGCAGCTGGTCGGGATGAAGGAACTGCCCCTGACCCAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS GCA 72 bp	AGTTCCTTCATCCCGACCAGCTGCATCAGACAGCCTTaGAGGTCATTGAGCAGCTGGTGGAGGCCAGTGCAG	+
Preference number: 6 (lower is better) Translates to: SSFIPTSCIRQP*RSLSSWWRPVQ Trigger: CTGCACTGGCCTCCACCAGCTGCTCAATGACCTGCAAGGCTGTCTGATGCAGCTGGTCGGGATGAAGGAACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS CAA 72 bp	CAGTTCCTTCATCCCGACCAGCTGCATCAGACAGCCTaGCAGGTCATTGAGCAGCTGGTGGAGGCCAGTGCA	+
Preference number: 6 (lower is better) Translates to: QFLHPDQLHQTA*QVIEQLVEASA Trigger: TGCACTGGCCTCCACCAGCTGCTCAATGACCTGCAAGGCTGTCTGATGCAGCTGGTCGGGATGAAGGAACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS TCA 72 bp	TCCCGACCAGCTGCATCAGACAGCCTTGCAGGTCATTaGGCAGCTGGTGGAGGCCAGTGCAGAATGAGTCTA	+
Preference number: 6 (lower is better) Translates to: SRPAASDSLAGH*AAGGGQCRMSL Trigger: TAGACTCATTCTGCACTGGCCTCCACCAGCTGCTCAATGACCTGCAAGGCTGTCTGATGCAGCTGGTCGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS CCA 72 bp	TGGAAATATTTCTTCATAGCCAGCTGGGAGTCTTCCTaGGTCAGGGGCAGTTCCTTCATCCCGACCAGCTGC	+
Preference number: 6 (lower is better) Translates to: WKYFFIASWESS*VRGSSFIPTSC Trigger: GCAGCTGGTCGGGATGAAGGAACTGCCCCTGACCCAGGAAGACTCCCAGCTGGCTATGAAGAAATATTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS TCA 72 bp	CTCCTTCTCCTCACTCAGTCTTGCCAGCAAGTTAACTaGGGAAGACAGGGCTCTCCAGACTTCTGCTCTGAC	+
Preference number: 6 (lower is better) Translates to: LLLLTQSCQQVN*GRQGSPDFCSD Trigger: GTCAGAGCAGAAGTCTGGAGAGCCCTGTCTTCCTCAGTTAACTTGCTGGCAAGACTGAGTGAGGAGAAGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS CCA 72 bp	ACAGTGATCCTGTGGAAATATTTCTTCATAGCCAGCTaGGAGTCTTCCTGGGTCAGGGGCAGTTCCTTCATC	+
Preference number: 6 (lower is better) Translates to: TVILWKYFFIAS*ESSWVRGSSFI Trigger: GATGAAGGAACTGCCCCTGACCCAGGAAGACTCCCAGCTGGCTATGAAGAAATATTTCCACAGGATCACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS CAA 72 bp	TATGAGTTTGAGGCAGGTCACATCCTAGAGAGCAGGTaGACCAGTAGCTTATCACCACCAAGACCATCAGGA	+
Preference number: 6 (lower is better) Translates to: YEFEAGHILESR*TSSLSPPRPSG Trigger: TCCTGATGGTCTTGGTGGTGATAAGCTACTGGTCAACCTGCTCTCTAGGATGTGACCTGCCTCAAACTCATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102807.2
CDS CCA 72 bp	CTGTGTTTCTTCTCTCTCAGGTACACAGTGATCCTGTaGAAATATTTCTTCATAGCCAGCTGGGAGTCTTCC	+
Preference number: 6 (lower is better) Translates to: LCFFSLRYTVIL*KYFFIASWESS Trigger: GGAAGACTCCCAGCTGGCTATGAAGAAATATTTCCACAGGATCACTGTGTACCTGAGAGAGAAGAAACACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102807.2

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