Pregenerated sensors for IFNA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000100713Ensembl transcript IDs: ENSMUST00000105143.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTCAGAGGAGGTTCCTGCACCCCCACCTGCTGCATCAGACAGCCTTaGAGGTCATTGAGCTGCTGGTGGAGGTCATTGCAGAATGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: VRGGSCTPTCCIRQP*RSLSCWWRSLQNES Trigger: AGACTCATTCTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAACCTCCTCTGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105143.3 |
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| CDS GCA 72 bp | GGTTCCTGCACCCCCACCTGCTGCATCAGACAGCCTTaGAGGTCATTGAGCTGCTGGTGGAGGTCATTGCAG | + |
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Preference number: 6 (lower is better) Translates to: GSCTPTCCIRQP*RSLSCWWRSLQ Trigger: CTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105143.3 |
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| CDS CAA 72 bp | GATCTGCTGGGTCAGCTCATGCAGAACACAGAGGGCTaGAGCCTCCTGGATCTGCTGGGCATCCACCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: DLLGQLMQNTEG*SLLDLLGIHLL Trigger: GAGAAGGTGGATGCCCAGCAGATCCAGGAGGCTCAAGCCCTCTGTGTTCTGCATGAGCTGACCCAGCAGATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105143.3 |
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| CDS TCA 72 bp | CCCCCACCTGCTGCATCAGACAGCCTTGCAGGTCATTaGGCTGCTGGTGGAGGTCATTGCAGAATGAGTCTA | + |
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Preference number: 6 (lower is better) Translates to: PPPAASDSLAGH*AAGGGHCRMSL Trigger: TAGACTCATTCTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105143.3 |
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| CDS CAA 72 bp | ACCCCCACCTGCTGCATCAGACAGCCTTGCAGGTCATaGAGCTGCTGGTGGAGGTCATTGCAGAATGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: TPTCCIRQPCRS*SCWWRSLQNES Trigger: AGACTCATTCTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105143.3 |
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