Pregenerated sensors for IFNA16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078355

Ensembl transcript IDs: ENSMUST00000105148.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	GCATACATACATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCGAGATGACAGAGATATaGGCAGAGAGGTACAGTGTT	+
Preference number: 2 (lower is better) Translates to: AYIHTYIHTYNQMEGTSAEMTEI*AERYSV Trigger: AACACTGTACCTCTCTGCTCATATCTCTGTCATCTC...GGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATGTATGTATGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR CCA 90 bp	CATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCTTTACAGAAAGCAGGGAGACTTCCTaGGTCAGAGGAGGTTCCTGC	+
Preference number: 4 (lower is better) Translates to: HTYIHTYNQMEGTSAFTESRETS*VRGGSC Trigger: GCAGGAACCTCCTCTGACCCAGGAAGTCTCCCTGCT...TTCTGTAAAGGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR GCA 90 bp	GCATACATACATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCTGCACTAGACAGGCTTaGAGGTCATTGAGCTGCTGG	+
Preference number: 4 (lower is better) Translates to: AYIHTYIHTYNQMEGTSACTRQA*RSLSCW Trigger: CCAGCAGCTCAATGACCTGCAAGCCTGTCTAGTGCA...GGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATGTATGTATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR GCA 90 bp	CATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCTTTACAGAATGCAACCTCACCTGCTaGACTAGACAGGCTTGCAGG	+
Preference number: 4 (lower is better) Translates to: HTYIHTYNQMEGTSAFTECNLTC*TRQACR Trigger: CCTGCAAGCCTGTCTAGTGCAGCAGGTGAGGTTGCA...TTCTGTAAAGGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR GCA 90 bp	CATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCTTTACAGAAGTCAGAGGAGGTTCCTaGAACCTCACCTGCTGCACT	+
Preference number: 4 (lower is better) Translates to: HTYIHTYNQMEGTSAFTEVRGGS*NLTCCT Trigger: AGTGCAGCAGGTGAGGTTGCAGGAACCTCCTCTGAC...TTCTGTAAAGGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR TCA 90 bp	GCATACATACATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCCTCTCAGGTACACAGTaGTCCTGTGGAAGTATTTCC	+
Preference number: 4 (lower is better) Translates to: AYIHTYIHTYNQMEGTSALSGTQ*SCGSIS Trigger: GGAAATACTTCCACAGGATCACTGTGTACCTGAGAG...GGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATGTATGTATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR TCA 90 bp	CATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCTTTACAGAAAGGCTCTCTTGTTCCTaGGTTTATGAGTCTGAGGCA	+
Preference number: 4 (lower is better) Translates to: HTYIHTYNQMEGTSAFTERLSCS*VYESEA Trigger: TGCCTCAGACTCATAAACTCAGGAACAAGAGAGCCT...TTCTGTAAAGGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR GCA 90 bp	CATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCTTTACAGAAAAGATGTTCAGGATCTaGTGGGTCACCTCACTTAGG	+
Preference number: 4 (lower is better) Translates to: HTYIHTYNQMEGTSAFTEKMFRI*WVTSLR Trigger: CCTAAGTGAGGTGACCCAGCAGATCCTGAACATCTT...TTCTGTAAAGGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR CCA 90 bp	CATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCTTTACAGAAATGGCTTTCTCTTTCTaGATCTTCAGGGTATCCACC	+
Preference number: 4 (lower is better) Translates to: HTYIHTYNQMEGTSAFTEMAFSF*IFRVST Trigger: GGTGGATACCCTGAAGATCCAGAAAGAGAAAGCCAT...TTCTGTAAAGGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR TCA 90 bp	CATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCTTTACAGAAATGAATCCTTTGATGTaGAGATGTTCAGGATCTGCT	+
Preference number: 4 (lower is better) Translates to: HTYIHTYNQMEGTSAFTEMNPLM*RCSGSA Trigger: AGCAGATCCTGAACATCTTCACATCAAAGGATTCAT...TTCTGTAAAGGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS-3UTR CAA 90 bp	GCATACATACATACATACATACATACATACAACCAAATGGAAGGAACAAGTGCCGGAGAGTCTCCTCATTaGTATCAAGAGTGTCAAGGC	+
Preference number: 5 (lower is better) Translates to: AYIHTYIHTYNQMEGTSAGESPH*YQECQG Trigger: GCCTTGACACTCTTGATACAAATGAGGAGACTCTCC...GGCACTTGTTCCTTCCATTTGGTTGTATGTATGTATGTATGTATGTATGTATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS GCA 72 bp	TCCTGGGTCAGAGGAGGTTCCTGCAACCTCACCTGCTaGACTAGACAGGCTTGCAGGTCATTGAGCTGCTGG	+
Preference number: 6 (lower is better) Translates to: SWVRGGSCNLTC*TRQACRSLSCW Trigger: CCAGCAGCTCAATGACCTGCAAGCCTGTCTAGTGCAGCAGGTGAGGTTGCAGGAACCTCCTCTGACCCAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS CCA 72 bp	GTCACCTCACTTAGGACAGGGATGGCTTTCTCTTTCTaGATCTTCAGGGTATCCACCTTCTCCTGGGGGAAT	+
Preference number: 6 (lower is better) Translates to: VTSLRTGMAFSF*IFRVSTFSWGN Trigger: ATTCCCCCAGGAGAAGGTGGATACCCTGAAGATCCAGAAAGAGAAAGCCATCCCTGTCCTAAGTGAGGTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105148.2
CDS CCA 72 bp	TCAGGATCTGCTGGGTCACCTCACTTAGGACAGGGATaGCTTTCTCTTTCTGGATCTTCAGGGTATCCACCT	+
Preference number: 6 (lower is better) Translates to: SGSAGSPHLGQG*LSLSGSSGYPP Trigger: AGGTGGATACCCTGAAGATCCAGAAAGAGAAAGCCATCCCTGTCCTAAGTGAGGTGACCCAGCAGATCCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105148.2