Pregenerated sensors for IFNA13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063376Ensembl transcript IDs: ENSMUST00000105149.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AAGCATATAAAGAGAGGTAGAGTTCAGAAGAGTCCTCTCCACACTTTGTCTCAGAGCAGGGAGTCTTCCTaGGTCAGGGGAAATTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: KHIKRGRVQKSPLHTLSQSRESS*VRGNSC Trigger: GCAGGAATTTCCCCTGACCCAGGAAGACTCCCTGCT...CTGAGACAAAGTGTGGAGAGGACTCTTCTGAACTCTACCTCTCTTTATATGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS-3UTR CCA 90 bp | AAGCATATAAAGAGAGGTAGAGTTCAGAAGAGTCCTCTCCACACTTTGTCTCAGGTCTTGCCAGCAAGTTaGCTGAGGAAGACAGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: KHIKRGRVQKSPLHTLSQVLPAS*LRKTGF Trigger: GAACCCTGTCTTCCTCAGCCAACTTGCTGGCAAGAC...CTGAGACAAAGTGTGGAGAGGACTCTTCTGAACTCTACCTCTCTTTATATGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS-3UTR TCA 90 bp | AAGCATATAAAGAGAGGTAGAGTTCAGAAGAGTCCTCTCCACACTTTGTCTCAGACAAAAGGGATGGCTTaGGCCTTCTTGATCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KHIKRGRVQKSPLHTLSQTKGMA*AFLICW Trigger: CCAGCAGATCAAGAAGGCTCAAGCCATCCCTTTTGT...CTGAGACAAAGTGTGGAGAGGACTCTTCTGAACTCTACCTCTCTTTATATGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS-3UTR GCA 90 bp | TACATACAGAAAAACTGCTCAGTTTTGCTGAAACATCTAGGCAGGTTGATTGTAGTCAGGGGAAATTCCTaGACCCCAACCTGCTGCATC | + |
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Preference number: 4 (lower is better) Translates to: YIQKNCSVLLKHLGRLIVVRGNS*TPTCCI Trigger: GATGCAGCAGGTTGGGGTGCAGGAATTTCCCCTGAC...TACAATCAACCTGCCTAGATGTTTCAGCAAAACTGAGCAGTTTTTCTGTATGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS-3UTR GCA 90 bp | TACATACAGAAAAACTGCTCAGTTTTGCTGAAACATCTAGGCAGGTTGATTGTATCCTGCACCCCAACCTaGTGCATCAGACAAGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: YIQKNCSVLLKHLGRLIVSCTPT*CIRQAL Trigger: CAAAGCTTGTCTGATGCAGCAGGTTGGGGTGCAGGA...TACAATCAACCTGCCTAGATGTTTCAGCAAAACTGAGCAGTTTTTCTGTATGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS-3UTR CCA 90 bp | TTACATACAGAAAAACTGCTCAGTTTTGCTGAAACATCTAGGCAGGTTGATTGTGCCTTCTTGATCTGCTaGGCATCCACCTTCTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LHTEKLLSFAETSRQVDCAFLIC*ASTFSC Trigger: ACAGGAGAAGGTGGATGCCCAGCAGATCAAGAAGGC...ACAATCAACCTGCCTAGATGTTTCAGCAAAACTGAGCAGTTTTTCTGTATGTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS-3UTR GCA 90 bp | TACATACAGAAAAACTGCTCAGTTTTGCTGAAACATCTAGGCAGGTTGATTGTAGCTGATGGAGGTCATTaGAGAATGAGTCTAGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: YIQKNCSVLLKHLGRLIVADGGH*RMSLGG Trigger: CCCTCCTAGACTCATTCTGCAATGACCTCCATCAGC...TACAATCAACCTGCCTAGATGTTTCAGCAAAACTGAGCAGTTTTTCTGTATGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS-3UTR TCA 90 bp | TACATACAGAAAAACTGCTCAGTTTTGCTGAAACATCTAGGCAGGTTGATTGTAATGAGTCATTTGATGTaGAGAGGGTCAGGATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: YIQKNCSVLLKHLGRLIVMSHLM*RGSGSA Trigger: AGCAGATCCTGACCCTCTTCACATCAAATGACTCAT...TACAATCAACCTGCCTAGATGTTTCAGCAAAACTGAGCAGTTTTTCTGTATGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS CAA 90 bp | GAGGGTCAGGATCTGCTGGGTCAGCTCATGAACAAAAGGGATGGCTaGAGCCTTCTTGATCTGCTGGGCATCCACCTTCTCCTGTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: EGQDLLGQLMNKRDG*SLLDLLGIHLLLWE Trigger: TTCCCACAGGAGAAGGTGGATGCCCAGCAGATCAAGAAGGCTCAAGCCATCCCTTTTGTTCATGAGCTGACCCAGCAGATCCTGACCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS CAA 72 bp | GATCTGCTGGGTCAGCTCATGAACAAAAGGGATGGCTaGAGCCTTCTTGATCTGCTGGGCATCCACCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: DLLGQLMNKRDG*SLLDLLGIHLL Trigger: GAGAAGGTGGATGCCCAGCAGATCAAGAAGGCTCAAGCCATCCCTTTTGTTCATGAGCTGACCCAGCAGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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| CDS CAA 72 bp | GTCCTTCAGACAGGAAAGAGGGGAGAGTCTCCTCATTaGTTCCAGGAGAGTCAAGGCTCTCTTGTTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: VLQTGKRGESPH*FQESQGSLVPE Trigger: CTCAGGAACAAGAGAGCCTTGACTCTCCTGGAACAAATGAGGAGACTCTCCCCTCTTTCCTGTCTGAAGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105149.3 |
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