Pregenerated sensors for IFNA12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073811

Ensembl transcript IDs: ENSMUST00000102806.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	CAGAGAGACATGACATTGCTAATTACTGTTGAAACATCAAGGCAACTTCTTTCACAGTGTCCTAGTCTATaGCAGTTCTCTCCATTTTGC	+
Preference number: 2 (lower is better) Translates to: QRDMTLLITVETSRQLLSQCPSL*QFSPFC Trigger: GCAAAATGGAGAGAACTGTCATAGACTAGGACACTG...TGAAAGAAGTTGCCTTGATGTTTCAACAGTAATTAGCAATGTCATGTCTCTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
3UTR-3UTR GCA 90 bp	CAGAGAGACATGACATTGCTAATTACTGTTGAAACATCAAGGCAACTTCTTTCACTGATATTTTTGAGATaGCAGAATTTGAGCAGTGAG	+
Preference number: 2 (lower is better) Translates to: QRDMTLLITVETSRQLLSLIFLR*QNLSSE Trigger: CTCACTGCTCAAATTCTGGCATCTCAAAAATATCAG...TGAAAGAAGTTGCCTTGATGTTTCAACAGTAATTAGCAATGTCATGTCTCTCTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
3UTR TCA 72 bp	AAACATCAAGGCAACTTCTTTCAAATCATGCACAAATaGCTGATATTTTTGAGATGCCAGAATTTGAGCAGT	+
Preference number: 3 (lower is better) Translates to: KHQGNFFQIMHK*LIFLRCQNLSS Trigger: ACTGCTCAAATTCTGGCATCTCAAAAATATCAGTCATTTGTGCATGATTTGAAAGAAGTTGCCTTGATGTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
CDS-3UTR GCA 90 bp	CAGAGAGACATGACATTGCTAATTACTGTTGAAACATCAAGGCAACTTCTTTCAGTCAGGGGAGGCTCCTaGACCCCCACCTGCTGCATC	+
Preference number: 4 (lower is better) Translates to: QRDMTLLITVETSRQLLSVRGGS*TPTCCI Trigger: GATGCAGCAGGTGGGGGTGCAGGAGCCTCCCCTGAC...TGAAAGAAGTTGCCTTGATGTTTCAACAGTAATTAGCAATGTCATGTCTCTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
CDS-3UTR CCA 90 bp	CAGAGAGACATGACATTGCTAATTACTGTTGAAACATCAAGGCAACTTCTTTCAAGCAGGGAGTCTTCCTaGGTCAGGGGAGGCTCCTGC	+
Preference number: 4 (lower is better) Translates to: QRDMTLLITVETSRQLLSSRESS*VRGGSC Trigger: GCAGGAGCCTCCCCTGACCCAGGAAGACTCCCTGCT...TGAAAGAAGTTGCCTTGATGTTTCAACAGTAATTAGCAATGTCATGTCTCTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
CDS-3UTR GCA 90 bp	CAGAGAGACATGACATTGCTAATTACTGTTGAAACATCAAGGCAACTTCTTTCAGGTTCTCCAGACTTCTaGTCTGACCACCTCCCAGGC	+
Preference number: 4 (lower is better) Translates to: QRDMTLLITVETSRQLLSGSPDF*SDHLPG Trigger: GCCTGGGAGGTGGTCAGAGCAGAAGTCTGGAGAACC...TGAAAGAAGTTGCCTTGATGTTTCAACAGTAATTAGCAATGTCATGTCTCTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
CDS-3UTR CCA 90 bp	CAGAGAGACATGACATTGCTAATTACTGTTGAAACATCAAGGCAACTTCTTTCAGCCTTCTTGATCTGCTaGGCATCCACCTTCTCCTGG	+
Preference number: 4 (lower is better) Translates to: QRDMTLLITVETSRQLLSAFLIC*ASTFSW Trigger: CCAGGAGAAGGTGGATGCCCAGCAGATCAAGAAGGC...TGAAAGAAGTTGCCTTGATGTTTCAACAGTAATTAGCAATGTCATGTCTCTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
CDS-3UTR TCA 90 bp	CAGAGAGACATGACATTGCTAATTACTGTTGAAACATCAAGGCAACTTCTTTCAAGGACAGGGATGACTTaGGCCTTCTTGATCTGCTGG	+
Preference number: 4 (lower is better) Translates to: QRDMTLLITVETSRQLLSRTGMT*AFLICW Trigger: CCAGCAGATCAAGAAGGCTCAAGTCATCCCTGTCCT...TGAAAGAAGTTGCCTTGATGTTTCAACAGTAATTAGCAATGTCATGTCTCTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
CDS-3UTR CCA 90 bp	CAGAGAGACATGACATTGCTAATTACTGTTGAAACATCAAGGCAACTTCTTTCAGCATCCACCTTCTCCTaGGGGAATCTAAAGTTCTTT	+
Preference number: 4 (lower is better) Translates to: QRDMTLLITVETSRQLLSASTFS*GNLKFF Trigger: AAAGAACTTTAGATTCCCCCAGGAGAAGGTGGATGC...TGAAAGAAGTTGCCTTGATGTTTCAACAGTAATTAGCAATGTCATGTCTCTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
CDS GCA 72 bp	TCTTCCTGGGTCAGGGGAGGCTCCTGCACCCCCACCTaGTGCATCAGACAGCCTTGCAGGTCATTGAGCTGC	+
Preference number: 6 (lower is better) Translates to: SSWVRGGSCTPT*CIRQPCRSLSC Trigger: GCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAGCCTCCCCTGACCCAGGAAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102806.2
CDS TCA 72 bp	CCCCCACCTGCTGCATCAGACAGCCTTGCAGGTCATTaGGCTGCTGATGGAGGTCATTGCAGAATGAGTCTA	+
Preference number: 6 (lower is better) Translates to: PPPAASDSLAGH*AADGGHCRMSL Trigger: TAGACTCATTCTGCAATGACCTCCATCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102806.2