Pregenerated sensors for IFNA11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000100549

Ensembl transcript IDs: ENSMUST00000170428.3

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGCAGGGAGTCTTCCTGGGTCAGGGGAGATTCCTGCACCCCCACCTaGTGCATCAGACAACCTTGCAGGTCATTGAGCTGCTGGTGGAGG	+
Preference number: 5 (lower is better) Translates to: SRESSWVRGDSCTPT*CIRQPCRSLSCWWR Trigger: CCTCCACCAGCAGCTCAATGACCTGCAAGGTTGTCTGATGCAGCAGGTGGGGGTGCAGGAATCTCCCCTGACCCAGGAAGACTCCCTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170428.3
CDS GCA 72 bp	GCCAGCAGGGAGTCTTCCTGGGTCAGGGGAGATTCCTaGACCCCCACCTGCTGCATCAGACAACCTTGCAGG	+
Preference number: 6 (lower is better) Translates to: ASRESSWVRGDS*TPTCCIRQPCR Trigger: CCTGCAAGGTTGTCTGATGCAGCAGGTGGGGGTGCAGGAATCTCCCCTGACCCAGGAAGACTCCCTGCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170428.3
CDS GCA 72 bp	TCCTGGGTCAGGGGAGATTCCTGCACCCCCACCTGCTaGATCAGACAACCTTGCAGGTCATTGAGCTGCTGG	+
Preference number: 6 (lower is better) Translates to: SWVRGDSCTPTC*IRQPCRSLSCW Trigger: CCAGCAGCTCAATGACCTGCAAGGTTGTCTGATGCAGCAGGTGGGGGTGCAGGAATCTCCCCTGACCCAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170428.3
CDS GCA 72 bp	TCTTCCTGGGTCAGGGGAGATTCCTGCACCCCCACCTaGTGCATCAGACAACCTTGCAGGTCATTGAGCTGC	+
Preference number: 6 (lower is better) Translates to: SSWVRGDSCTPT*CIRQPCRSLSC Trigger: GCAGCTCAATGACCTGCAAGGTTGTCTGATGCAGCAGGTGGGGGTGCAGGAATCTCCCCTGACCCAGGAAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170428.3
CDS GCA 72 bp	GATTCCTGCACCCCCACCTGCTGCATCAGACAACCTTaGAGGTCATTGAGCTGCTGGTGGAGGTCATTGCAG	+
Preference number: 6 (lower is better) Translates to: DSCTPTCCIRQP*RSLSCWWRSLQ Trigger: CTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGTTGTCTGATGCAGCAGGTGGGGGTGCAGGAATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170428.3
CDS TCA 72 bp	ATCTGCTGGGTAAGATCTCGCAGCACAGGGATGGATTaGGCCTTCTGGATCTGCTGGGCATCCACCTTCTCC	+
Preference number: 6 (lower is better) Translates to: ICWVRSRSTGMD*AFWICWASTFS Trigger: GGAGAAGGTGGATGCCCAGCAGATCCAGAAGGCTCAATCCATCCCTGTGCTGCGAGATCTTACCCAGCAGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170428.3
CDS CAA 72 bp	AGATTCCTGCACCCCCACCTGCTGCATCAGACAACCTaGCAGGTCATTGAGCTGCTGGTGGAGGTCATTGCA	+
Preference number: 6 (lower is better) Translates to: RFLHPHLLHQTT*QVIELLVEVIA Trigger: TGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGTTGTCTGATGCAGCAGGTGGGGGTGCAGGAATCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170428.3
CDS TCA 72 bp	CCCCCACCTGCTGCATCAGACAACCTTGCAGGTCATTaGGCTGCTGGTGGAGGTCATTGCAGAATGAGTCTA	+
Preference number: 6 (lower is better) Translates to: PPPAASDNLAGH*AAGGGHCRMSL Trigger: TAGACTCATTCTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGTTGTCTGATGCAGCAGGTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170428.3
CDS CAA 72 bp	ACCCCCACCTGCTGCATCAGACAACCTTGCAGGTCATaGAGCTGCTGGTGGAGGTCATTGCAGAATGAGTCT	+
Preference number: 6 (lower is better) Translates to: TPTCCIRQPCRS*SCWWRSLQNES Trigger: AGACTCATTCTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGTTGTCTGATGCAGCAGGTGGGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170428.3