Pregenerated sensors for IFNA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095498

Ensembl transcript IDs: ENSMUST00000094972.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGGGCATCTTCCTGGGTCAGGGGAAATTCCTGCACCCCCACCTGCTaGATCAGACAGCCTTGCAGGTCATTGAGCTGCTGGTGGAGGTCA	+
Preference number: 5 (lower is better) Translates to: RASSWVRGNSCTPTC*IRQPCRSLSCWWRS Trigger: TGACCTCCACCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAATTTCCCCTGACCCAGGAAGATGCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094972.2
CDS GCA 72 bp	GCCAGCAGGGCATCTTCCTGGGTCAGGGGAAATTCCTaGACCCCCACCTGCTGCATCAGACAGCCTTGCAGG	+
Preference number: 6 (lower is better) Translates to: ASRASSWVRGNS*TPTCCIRQPCR Trigger: CCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAATTTCCCCTGACCCAGGAAGATGCCCTGCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094972.2
CDS GCA 72 bp	TCCTGGGTCAGGGGAAATTCCTGCACCCCCACCTGCTaGATCAGACAGCCTTGCAGGTCATTGAGCTGCTGG	+
Preference number: 6 (lower is better) Translates to: SWVRGNSCTPTC*IRQPCRSLSCW Trigger: CCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAATTTCCCCTGACCCAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094972.2
CDS GCA 72 bp	TCTTCCTGGGTCAGGGGAAATTCCTGCACCCCCACCTaGTGCATCAGACAGCCTTGCAGGTCATTGAGCTGC	+
Preference number: 6 (lower is better) Translates to: SSWVRGNSCTPT*CIRQPCRSLSC Trigger: GCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAATTTCCCCTGACCCAGGAAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094972.2
CDS CAA 90 bp	GATGTTCAGGATCTGCTGGGTCAGCTCACTCAGGACAGGGATGGCTaGAGCCTTCTTGATCTGCTGGGCATCCACCTTCTCCTGCGGGAA	+
Preference number: 6 (lower is better) Translates to: DVQDLLGQLTQDRDG*SLLDLLGIHLLLRE Trigger: TTCCCGCAGGAGAAGGTGGATGCCCAGCAGATCAAGAAGGCTCAAGCCATCCCTGTCCTGAGTGAGCTGACCCAGCAGATCCTGAACATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094972.2
CDS GCA 72 bp	AATTCCTGCACCCCCACCTGCTGCATCAGACAGCCTTaGAGGTCATTGAGCTGCTGGTGGAGGTCATTGCAG	+
Preference number: 6 (lower is better) Translates to: NSCTPTCCIRQP*RSLSCWWRSLQ Trigger: CTGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094972.2
CDS CAA 72 bp	AAATTCCTGCACCCCCACCTGCTGCATCAGACAGCCTaGCAGGTCATTGAGCTGCTGGTGGAGGTCATTGCA	+
Preference number: 6 (lower is better) Translates to: KFLHPHLLHQTA*QVIELLVEVIA Trigger: TGCAATGACCTCCACCAGCAGCTCAATGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAATTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094972.2

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