RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IFITM7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000065968

Ensembl transcript IDs: ENSMUST00000117803.2, ENSMUST00000178021.2

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCATTCTTGATGCCTGCTGCCAGCCTGTAGGTGGATCTGCCAGATaGTTTCTCTGGAATAGCTCAGGGGCCTCTCAGCAGGTAGCAGTG +
Preference number: 1 (lower is better)
Translates to: SILDACCQPVGGSAR*FLWNSSGASQQVAV
Trigger: CACTGCTACCTGCTGAGAGGCCCCTGAGCTATTCCAGAGAAAGCATCTGGCAGATCCACCTACAGGCTGGCAGCAGGCATCAAGAATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
3UTR TCA 90 bp GGTGACAATACAGCTTCCTGGGTATGGAGTCTCTTTAATGGGTGGTaGAGTGTTTTAGAATTTAGAATCAAAAGTGCACCCTCTTCAAAA +
Preference number: 1 (lower is better)
Translates to: GDNTASWVWSLFNGW*SVLEFRIKSAPSSK
Trigger: TTTTGAAGAGGGTGCACTTTTGATTCTAAATTCTAAAACACTTCACCACCCATTAAAGAGACTCCATACCCAGGAAGCTGTATTGTCACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178021.2
3UTR CAA 90 bp TGGAGAAGAGCAGTGGCAGGTGATAGAACAATAGAGCCATCTAGGTaGGAAGGCTCCACCCCAGGTGGTCTCATTCTCAGTGGCAGCATG +
Preference number: 2 (lower is better)
Translates to: WRRAVAGDRTIEPSR*EGSTPGGLILSGSM
Trigger: CATGCTGCCACTGAGAATGAGACCACCTGGGGTGGAGCCTTCCAACCTAGATGGCTCTATTGTTCTATCACCTGCCACTGCTCTTCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
3UTR-3UTR CCA 90 bp ATCAAGGCCCAAAGTTTACTAAGAGTCTGTGCTTATAAAGGGGGAAGGCCCATCTTCTCAGTGGCAGCATaGTCAAGTCTGAATCAGCCT +
Preference number: 2 (lower is better)
Translates to: IKAQSLLRVCAYKGGRPIFSVAA*SSLNQP
Trigger: AGGCTGATTCAGACTTGACCATGCTGCCACTGAGAA...GATGGGCCTTCCCCCTTTATAAGCACAGACTCTTAGTAAACTTTGGGCCTTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
3UTR-3UTR TCA 90 bp GAACTAGTCACAGTAGCTAAAAGGCAGGAACACTCAACTGTCCATCAATGGCAGGCACATGCACTTTATTaGATGAACAGATATGCAAGT +
Preference number: 2 (lower is better)
Translates to: ELVTVAKRQEHSTVHQWQAHALY*MNRYAS
Trigger: ACTTGCATATCTGTTCATTCAATAAAGTGCATGTGC...CTGCCATTGATGGACAGTTGAGTGTTCCTGCCTTTTAGCTACTGTGACTAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178021.2
3UTR GCA 72 bp GATGCCTGCTGCCAGCCTGTAGGTGGATCTGCCAGATaGTTTCTCTGGAATAGCTCAGGGGCCTCTCAGCAG +
Preference number: 3 (lower is better)
Translates to: DACCQPVGGSAR*FLWNSSGASQQ
Trigger: CTGCTGAGAGGCCCCTGAGCTATTCCAGAGAAAGCATCTGGCAGATCCACCTACAGGCTGGCAGCAGGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
3UTR CCA 72 bp TGCCAGCCTGTAGGTGGATCTGCCAGATGCTTTCTCTaGAATAGCTCAGGGGCCTCTCAGCAGGTAGCAGTG +
Preference number: 3 (lower is better)
Translates to: CQPVGGSARCFL*NSSGASQQVAV
Trigger: CACTGCTACCTGCTGAGAGGCCCCTGAGCTATTCCAGAGAAAGCATCTGGCAGATCCACCTACAGGCTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
3UTR-3UTR CAA 90 bp CAGGAGCCCACGTGTGAAGGCGCCTTTCCTATGAAATACTCAGAACATGAATTCGGAGAGCAAGAGTGGTaGCTAGGAACTGGAGGAGAG +
Preference number: 3 (lower is better)
Translates to: QEPTCEGAFPMKYSEHEFGEQEW*LGTGGE
Trigger: CTCTCCTCCAGTTCCTAGCAACCACTCTTGCTCTCC...GAATTCATGTTCTGAGTATTTCATAGGAAAGGCGCCTTCACACGTGGGCTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178021.2
3UTR-3UTR CAA 90 bp GTTGCTAGGAACTGGAGGAGAGCGGAAGGTGACAATACAGCTTCCTGGGTATGGAGCACATGCACTTTATaGAATGAACAGATATGCAAG +
Preference number: 3 (lower is better)
Translates to: VARNWRRAEGDNTASWVWSTCTL*NEQICK
Trigger: CTTGCATATCTGTTCATTCAATAAAGTGCATGTGCT...CCATACCCAGGAAGCTGTATTGTCACCTTCCGCTCTCCTCCAGTTCCTAGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178021.2
3UTR TCA 72 bp ACAGCTTCCTGGGTATGGAGTCTCTTTAATGGGTGGTaGAGTGTTTTAGAATTTAGAATCAAAAGTGCACCC +
Preference number: 3 (lower is better)
Translates to: TASWVWSLFNGW*SVLEFRIKSAP
Trigger: GGGTGCACTTTTGATTCTAAATTCTAAAACACTTCACCACCCATTAAAGAGACTCCATACCCAGGAAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178021.2
3UTR CCA 72 bp ATGAACAGATATGCAAGTGTAACATTTGCATATGTATaGGGTAAATGGTCAGGACTAAGACTAGGGTTTGGG +
Preference number: 3 (lower is better)
Translates to: MNRYASVTFAYV*GKWSGLRLGFG
Trigger: CCCAAACCCTAGTCTTAGTCCTGACCATTTACCCCATACATATGCAAATGTTACACTTGCATATCTGTTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178021.2
CDS-3UTR TCA 90 bp GGTGGATCTGCCAGATGCTTTCTCTGGAATAGCTCAGGGGCCTCTCAGCAGGTATCAGGTGCTGGAGATTaGAGAGATGGAGCAGCTTCC +
Preference number: 4 (lower is better)
Translates to: GGSARCFLWNSSGASQQVSGAGD*RDGAAS
Trigger: GGAAGCTGCTCCATCTCTTCAATCTCCAGCACCTGA...TACCTGCTGAGAGGCCCCTGAGCTATTCCAGAGAAAGCATCTGGCAGATCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
3UTR CAA 72 bp GCAGTGGCAGGTGATAGAACAATAGAGCCATCTAGGTaGGAAGGCTCCACCCCAGGTGGTCTCATTCTCAGT +
Preference number: 4 (lower is better)
Translates to: AVAGDRTIEPSR*EGSTPGGLILS
Trigger: ACTGAGAATGAGACCACCTGGGGTGGAGCCTTCCAACCTAGATGGCTCTATTGTTCTATCACCTGCCACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS-3UTR TCA 90 bp GTGTCTTGGAGAAGAGCAGTGGCAGGTGATAGAACAATAGAGCCATCTAGGTTGAGAGGATCAGGCAGCTaGTGTTCAGGCACCTGGCAG +
Preference number: 4 (lower is better)
Translates to: VSWRRAVAGDRTIEPSRLRGSGS*CSGTWQ
Trigger: CTGCCAGGTGCCTGAACATCAGCTGCCTGATCCTCT...CAACCTAGATGGCTCTATTGTTCTATCACCTGCCACTGCTCTTCTCCAAGACAC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS-3UTR CCA 90 bp ACCCCAGGTGGTCTCATTCTCAGTGGCAGCATGGTCAAGTCTGAATCAGCCTGCTGGAGATTGAAGAGATaGAGCAGCTTCCTCAGCAAC +
Preference number: 4 (lower is better)
Translates to: TPGGLILSGSMVKSESACWRLKR*SSFLSN
Trigger: GTTGCTGAGGAAGCTGCTCCATCTCTTCAATCTCCA...GCAGGCTGATTCAGACTTGACCATGCTGCCACTGAGAATGAGACCACCTGGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS-3UTR CCA 90 bp TCCACCCCAGGTGGTCTCATTCTCAGTGGCAGCATGGTCAAGTCTGAATCAGCCTCCTTAGGCATCTCTTaGTTTTTGAGGCAGTTGGGA +
Preference number: 4 (lower is better)
Translates to: STPGGLILSGSMVKSESASLGIS*FLRQLG
Trigger: TCCCAACTGCCTCAAAAACCAAGAGATGCCTAAGGA...GGCTGATTCAGACTTGACCATGCTGCCACTGAGAATGAGACCACCTGGGGTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS-3UTR TCA 90 bp ATCAAGGCCCAAAGTTTACTAAGAGTCTGTGCTTATAAAGGGGGAAGGCCCATCGCATCTCTTGGTTTTTaGGGCAGTTGGGAGCTTTCA +
Preference number: 4 (lower is better)
Translates to: IKAQSLLRVCAYKGGRPIASLGF*GSWELS
Trigger: TGAAAGCTCCCAACTGCCTCAAAAACCAAGAGATGC...GATGGGCCTTCCCCCTTTATAAGCACAGACTCTTAGTAAACTTTGGGCCTTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS-3UTR TCA 90 bp AGATATGCAAGTGTAACATTTGCATATGTATGGGGTAAATGGTCAGGACTAAGAAGAGGATCAGGCAGCTaGTGTTCAGGCACCTGGCAG +
Preference number: 4 (lower is better)
Translates to: RYASVTFAYVWGKWSGLRRGSGS*CSGTWQ
Trigger: CTGCCAGGTGCCTGAACATCAGCTGCCTGATCCTCT...TCTTAGTCCTGACCATTTACCCCATACATATGCAAATGTTACACTTGCATATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178021.2
CDS CCA 90 bp TTAGGCATCTCTTGGTTTTTGAGGCAGTTGGGAGCTTTCAGGTGCTaGAGATTGAAGAGATGGAGCAGCTTCCTCAGCAACGCCGGGCCC +
Preference number: 5 (lower is better)
Translates to: LGISWFLRQLGAFRC*RLKRWSSFLSNAGP
Trigger: GGGCCCGGCGTTGCTGAGGAAGCTGCTCCATCTCTTCAATCTCCAGCACCTGAAAGCTCCCAACTGCCTCAAAAACCAAGAGATGCCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS-3UTR CAA 90 bp GTTGGAAGGCTCCACCCCAGGTGGTCTCATTCTCAGTGGCAGCATGGTCAAGTCTTCAGGTGCTGGAGATaGAAGAGATGGAGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: VGRLHPRWSHSQWQHGQVFRCWR*KRWSSF
Trigger: GAAGCTGCTCCATCTCTTCAATCTCCAGCACCTGAA...GACTTGACCATGCTGCCACTGAGAATGAGACCACCTGGGGTGGAGCCTTCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS-3UTR CAA 90 bp CATCTAGGTTGGAAGGCTCCACCCCAGGTGGTCTCATTCTCAGTGGCAGCATGGGGCATCTCTTGGTTTTaGAGGCAGTTGGGAGCTTTC +
Preference number: 5 (lower is better)
Translates to: HLGWKAPPQVVSFSVAAWGISWF*RQLGAF
Trigger: GAAAGCTCCCAACTGCCTCAAAAACCAAGAGATGCC...CCATGCTGCCACTGAGAATGAGACCACCTGGGGTGGAGCCTTCCAACCTAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS-3UTR CAA 90 bp GTTGCTAGGAACTGGAGGAGAGCGGAAGGTGACAATACAGCTTCCTGGGTATGGTGGTTGTCGAAGAAGTaGAGGTGTGGGGTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: VARNWRRAEGDNTASWVWWLSKK*RCGVSP
Trigger: TGGGGACACCCCACACCTCAACTTCTTCGACAACCA...CCATACCCAGGAAGCTGTATTGTCACCTTCCGCTCTCCTCCAGTTCCTAGCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178021.2
CDS GCA 90 bp TCCTTAGGCATCTCTTGGTTTTTGAGGCAGTTGGGAGCTTTCAGGTaGTGGAGATTGAAGAGATGGAGCAGCTTCCTCAGCAACGCCGGG +
Preference number: 5 (lower is better)
Translates to: SLGISWFLRQLGAFR*WRLKRWSSFLSNAG
Trigger: CCCGGCGTTGCTGAGGAAGCTGCTCCATCTCTTCAATCTCCAGCACCTGAAAGCTCCCAACTGCCTCAAAAACCAAGAGATGCCTAAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS TCA 90 bp ACAGAGACCAGACCACATAATCAGGCTTGGAGATCTCAGGCATGGTaGTTATGGTGGTTGTCGAAGAAGTTGAGGTGTGGGGTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: TETRPHNQAWRSQAW*LWWLSKKLRCGVSP
Trigger: TGGGGACACCCCACACCTCAACTTCTTCGACAACCACCATAATCACCATGCCTGAGATCTCCAAGCCTGATTATGTGGTCTGGTCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117803.2
ENSMUST00000178021.2
CDS-3UTR CAA 90 bp GTGTCTTGGAGAAGAGCAGTGGCAGGTGATAGAACAATAGAGCCATCTAGGTTGTGGTTGTCGAAGAAGTaGAGGTGTGGGGTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: VSWRRAVAGDRTIEPSRLWLSKK*RCGVSP
Trigger: TGGGGACACCCCACACCTCAACTTCTTCGACAACCA...CAACCTAGATGGCTCTATTGTTCTATCACCTGCCACTGCTCTTCTCCAAGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2
CDS GCA 72 bp ATCTCTTGGTTTTTGAGGCAGTTGGGAGCTTTCAGGTaGTGGAGATTGAAGAGATGGAGCAGCTTCCTCAGC +
Preference number: 6 (lower is better)
Translates to: ISWFLRQLGAFR*WRLKRWSSFLS
Trigger: GCTGAGGAAGCTGCTCCATCTCTTCAATCTCCAGCACCTGAAAGCTCCCAACTGCCTCAAAAACCAAGAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117803.2