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Pregenerated sensors for IFITM5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025489

Ensembl transcript IDs: ENSMUST00000026562.6

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp ACTGAGGACCCTCTAGGTTATAAGTTAAGTCTGAGGGATCTGAGTGGGGCAGCACAAGAGGGCCGCCTCTaGGGTCACGGCTGGGCAGGG +
Preference number: 2 (lower is better)
Translates to: TEDPLGYKLSLRDLSGAAQEGRL*GHGWAG
Trigger: CCCTGCCCAGCCGTGACCTCAGAGGCGGCCCTCTTG...TGCTGCCCCACTCAGATCCCTCAGACTTAACTTATAACCTAGAGGGTCCTCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
3UTR CAA 90 bp AGGGATCGAGGTGCTATAGTAGGCTGTAACTCCCAGGAGCTGGTGTaGGGCACAGCTGACCTGACATGGTTGTCCTCGGTTCAGGGACAG +
Preference number: 2 (lower is better)
Translates to: RDRGAIVGCNSQELV*GTADLTWLSSVQGQ
Trigger: CTGTCCCTGAACCGAGGACAACCATGTCAGGTCAGCTGTGCCCAACACCAGCTCCTGGGAGTTACAGCCTACTATAGCACCTCGATCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
3UTR-3UTR CCA 90 bp AAAGGGACAAAGCCAAGCACTGAGGACCCTCTAGGTTATAAGTTAAGTCTGAGGGTAACTCCCAGGAGCTaGTGTTGGGCACAGCTGACC +
Preference number: 2 (lower is better)
Translates to: KGTKPSTEDPLGYKLSLRVTPRS*CWAQLT
Trigger: GGTCAGCTGTGCCCAACACCAGCTCCTGGGAGTTAC...CCTCAGACTTAACTTATAACCTAGAGGGTCCTCAGTGCTTGGCTTTGTCCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
3UTR CCA 72 bp GAGGGATCTGAGTGGGGCAGCATCAAATACACATCGTaGACAAGAGGGCCGCCTCTGAGGTCACGGCTGGGC +
Preference number: 3 (lower is better)
Translates to: EGSEWGSIKYTS*TRGPPLRSRLG
Trigger: GCCCAGCCGTGACCTCAGAGGCGGCCCTCTTGTCCACGATGTGTATTTGATGCTGCCCCACTCAGATCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
3UTR TCA 72 bp GTAACTCCCAGGAGCTGGTGTTGGGCACAGCTGACCTaGCATGGTTGTCCTCGGTTCAGGGACAGGCTCGGA +
Preference number: 3 (lower is better)
Translates to: VTPRSWCWAQLT*HGCPRFRDRLG
Trigger: TCCGAGCCTGTCCCTGAACCGAGGACAACCATGTCAGGTCAGCTGTGCCCAACACCAGCTCCTGGGAGTTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
3UTR-3UTR CAA 90 bp ACTGAGGACCCTCTAGGTTATAAGTTAAGTCTGAGGGATCTGAGTGGGGCAGCAGCTGACCTGACATGGTaGTCCTCGGTTCAGGGACAG +
Preference number: 3 (lower is better)
Translates to: TEDPLGYKLSLRDLSGAAADLTW*SSVQGQ
Trigger: CTGTCCCTGAACCGAGGACAACCATGTCAGGTCAGC...TGCTGCCCCACTCAGATCCCTCAGACTTAACTTATAACCTAGAGGGTCCTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR GCA 90 bp GCCACTTTTAATCGTGAACAGAGGCTCGGCCTGGTAAGTGGGGAAAGGGACAAAGAGGGCTGTGTGGGCTaGAGCATCAGCCTTGCGGGA +
Preference number: 4 (lower is better)
Translates to: ATFNREQRLGLVSGERDKEGCVG*SISLAG
Trigger: TCCCGCAAGGCTGATGCTGCAGCCCACACAGCCCTC...TTTGTCCCTTTCCCCACTTACCAGGCCGAGCCTCTGTTCACGATTAAAAGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR CCA 90 bp GCCACTTTTAATCGTGAACAGAGGCTCGGCCTGGTAAGTGGGGAAAGGGACAAAGGCCAGGTGTTCCCATaGAGAGGGCTGTGTGGGCTG +
Preference number: 4 (lower is better)
Translates to: ATFNREQRLGLVSGERDKGQVFP*RGLCGL
Trigger: CAGCCCACACAGCCCTCTCCATGGGAACACCTGGCC...TTTGTCCCTTTCCCCACTTACCAGGCCGAGCCTCTGTTCACGATTAAAAGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR CCA 90 bp GCCACTTTTAATCGTGAACAGAGGCTCGGCCTGGTAAGTGGGGAAAGGGACAAACGGGCCTTGACAGAGTaGACCAGCGCCAGGAATCCA +
Preference number: 4 (lower is better)
Translates to: ATFNREQRLGLVSGERDKRALTE*TSARNP
Trigger: TGGATTCCTGGCGCTGGTCCACTCTGTCAAGGCCCG...TTTGTCCCTTTCCCCACTTACCAGGCCGAGCCTCTGTTCACGATTAAAAGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR GCA 90 bp GGGACAAAGCCAAGCACTGAGGACCCTCTAGGTTATAAGTTAAGTCTGAGGGATCTGCAGCATCAGCCTTaGGGGATGATGGAGCCCGGG +
Preference number: 4 (lower is better)
Translates to: GTKPSTEDPLGYKLSLRDLQHQP*GMMEPG
Trigger: CCCGGGCTCCATCATCCCGCAAGGCTGATGCTGCAG...ATCCCTCAGACTTAACTTATAACCTAGAGGGTCCTCAGTGCTTGGCTTTGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR GCA 90 bp CTGGTGTTGGGCACAGCTGACCTGACATGGTTGTCCTCGGTTCAGGGACAGGCTCACCAATGTCCACATTaGAGCCAGGATGTTGTAGCA +
Preference number: 4 (lower is better)
Translates to: LVLGTADLTWLSSVQGQAHQCPH*SQDVVA
Trigger: TGCTACAACATCCTGGCTGCAATGTGGACATTGGTG...AGCCTGTCCCTGAACCGAGGACAACCATGTCAGGTCAGCTGTGCCCAACACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR TCA 90 bp TCTGCCACTTTTAATCGTGAACAGAGGCTCGGCCTGGTAAGTGGGGAAAGGGACCATCAAACTTGGTGCTaGAGAAAGCCGCAGAGTCTT +
Preference number: 4 (lower is better)
Translates to: SATFNREQRLGLVSGERDHQTWC*RKPQSL
Trigger: AAGACTCTGCGGCTTTCTTCAGCACCAAGTTTGATG...GTCCCTTTCCCCACTTACCAGGCCGAGCCTCTGTTCACGATTAAAAGTGGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR GCA 90 bp AAGTTAAGTCTGAGGGATCTGAGTGGGGCAGCATCAAATACACATCGTGGACAAGCTTTGGAGCCATACTaGCTTGCAGCCTCCAAGTTC +
Preference number: 4 (lower is better)
Translates to: KLSLRDLSGAASNTHRGQALEPY*LAASKF
Trigger: GAACTTGGAGGCTGCAAGGCAGTATGGCTCCAAAGC...TTGTCCACGATGTGTATTTGATGCTGCCCCACTCAGATCCCTCAGACTTAACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR CCA 90 bp AAGTTAAGTCTGAGGGATCTGAGTGGGGCAGCATCAAATACACATCGTGGACAATGTAGCACTTGGCTTTaGAGCCATACTGCCTTGCAG +
Preference number: 4 (lower is better)
Translates to: KLSLRDLSGAASNTHRGQCSTWL*SHTALQ
Trigger: CTGCAAGGCAGTATGGCTCCAAAGCCAAGTGCTACA...TTGTCCACGATGTGTATTTGATGCTGCCCCACTCAGATCCCTCAGACTTAACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS GCA 90 bp TTGGTGCTGAAGAAAGCCGCAGAGTCTTTGGCTAACTTGGACAGGTaGAAGGCGCCAGTCACCACCAGTCCCAGGAGCAGCAATGGGGGC +
Preference number: 5 (lower is better)
Translates to: LVLKKAAESLANLDR*KAPVTTSPRSSNGG
Trigger: GCCCCCATTGCTGCTCCTGGGACTGGTGGTGACTGGCGCCTTGCACCTGTCCAAGTTAGCCAAAGACTCTGCGGCTTTCTTCAGCACCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS GCA 90 bp CACCACCAGTCCCAGGAGCAGCAATGGGGGCACCAATGTCCACATTaGAGCCAGGATGTTGTAGCACTTGGCTTTGGAGCCATACTGCCT +
Preference number: 5 (lower is better)
Translates to: HHQSQEQQWGHQCPH*SQDVVALGFGAILP
Trigger: AGGCAGTATGGCTCCAAAGCCAAGTGCTACAACATCCTGGCTGCAATGTGGACATTGGTGCCCCCATTGCTGCTCCTGGGACTGGTGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR CAA 90 bp AAAGGGACAAAGCCAAGCACTGAGGACCCTCTAGGTTATAAGTTAAGTCTGAGGGCTGCAGCATCAGCCTaGCGGGATGATGGAGCCCGG +
Preference number: 5 (lower is better)
Translates to: KGTKPSTEDPLGYKLSLRAAASA*RDDGAR
Trigger: CCGGGCTCCATCATCCCGCAAGGCTGATGCTGCAGC...CCTCAGACTTAACTTATAACCTAGAGGGTCCTCAGTGCTTGGCTTTGTCCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR CAA 90 bp GGGACAAAGCCAAGCACTGAGGACCCTCTAGGTTATAAGTTAAGTCTGAGGGATGCACCAATGTCCACATaGCAGCCAGGATGTTGTAGC +
Preference number: 5 (lower is better)
Translates to: GTKPSTEDPLGYKLSLRDAPMST*QPGCCS
Trigger: GCTACAACATCCTGGCTGCAATGTGGACATTGGTGC...ATCCCTCAGACTTAACTTATAACCTAGAGGGTCCTCAGTGCTTGGCTTTGTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS-3UTR CAA 90 bp AAGTTAAGTCTGAGGGATCTGAGTGGGGCAGCATCAAATACACATCGTGGACAATCCTCCTCATCAAACTaGGTGCTGAAGAAAGCCGCA +
Preference number: 5 (lower is better)
Translates to: KLSLRDLSGAASNTHRGQSSSSN*VLKKAA
Trigger: TGCGGCTTTCTTCAGCACCAAGTTTGATGAGGAGGA...TTGTCCACGATGTGTATTTGATGCTGCCCCACTCAGATCCCTCAGACTTAACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS TCA 72 bp CCTCCAAGTTCCCAGCCATCTTCTGGTCTCGGGCCTTaGCAGAGTGGACCAGCGCCAGGAATCCAAGGCAGC +
Preference number: 6 (lower is better)
Translates to: PPSSQPSSGLGP*QSGPAPGIQGS
Trigger: GCTGCCTTGGATTCCTGGCGCTGGTCCACTCTGTCAAGGCCCGAGACCAGAAGATGGCTGGGAACTTGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS CAA 72 bp GCCTCCAAGTTCCCAGCCATCTTCTGGTCTCGGGCCTaGACAGAGTGGACCAGCGCCAGGAATCCAAGGCAG +
Preference number: 6 (lower is better)
Translates to: ASKFPAIFWSRA*TEWTSARNPRQ
Trigger: CTGCCTTGGATTCCTGGCGCTGGTCCACTCTGTCAAGGCCCGAGACCAGAAGATGGCTGGGAACTTGGAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS CCA 72 bp CAAGGCGCCAGTCACCACCAGTCCCAGGAGCAGCAATaGGGGCACCAATGTCCACATTGCAGCCAGGATGTT +
Preference number: 6 (lower is better)
Translates to: QGASHHQSQEQQ*GHQCPHCSQDV
Trigger: AACATCCTGGCTGCAATGTGGACATTGGTGCCCCCATTGCTGCTCCTGGGACTGGTGGTGACTGGCGCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS GCA 72 bp AAGAAAGCCGCAGAGTCTTTGGCTAACTTGGACAGGTaGAAGGCGCCAGTCACCACCAGTCCCAGGAGCAGC +
Preference number: 6 (lower is better)
Translates to: KKAAESLANLDR*KAPVTTSPRSS
Trigger: GCTGCTCCTGGGACTGGTGGTGACTGGCGCCTTGCACCTGTCCAAGTTAGCCAAAGACTCTGCGGCTTTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS CCA 72 bp CATCGTGCTGAAGACAGACCAGAGCATGTGATCTCGTaGTGTAGGGCCAGGTGTTCCCATGGAGAGGGCTGT +
Preference number: 6 (lower is better)
Translates to: HRAEDRPEHVIS*CRARCSHGEGC
Trigger: ACAGCCCTCTCCATGGGAACACCTGGCCCTACACCACGAGATCACATGCTCTGGTCTGTCTTCAGCACGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS CAA 72 bp TTGGTGCTGAAGAAAGCCGCAGAGTCTTTGGCTAACTaGGACAGGTGCAAGGCGCCAGTCACCACCAGTCCC +
Preference number: 6 (lower is better)
Translates to: LVLKKAAESLAN*DRCKAPVTTSP
Trigger: GGGACTGGTGGTGACTGGCGCCTTGCACCTGTCCAAGTTAGCCAAAGACTCTGCGGCTTTCTTCAGCACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS CAA 90 bp TCATCAAACTTGGTGCTGAAGAAAGCCGCAGAGTCTTTGGCTAACTaGGACAGGTGCAAGGCGCCAGTCACCACCAGTCCCAGGAGCAGC +
Preference number: 6 (lower is better)
Translates to: SSNLVLKKAAESLAN*DRCKAPVTTSPRSS
Trigger: GCTGCTCCTGGGACTGGTGGTGACTGGCGCCTTGCACCTGTCCAAGTTAGCCAAAGACTCTGCGGCTTTCTTCAGCACCAAGTTTGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS TCA 72 bp TTCAGGTACATCGTGCTGAAGACAGACCAGAGCATGTaGTCTCGTGGTGTAGGGCCAGGTGTTCCCATGGAG +
Preference number: 6 (lower is better)
Translates to: FRYIVLKTDQSM*SRGVGPGVPME
Trigger: CTCCATGGGAACACCTGGCCCTACACCACGAGATCACATGCTCTGGTCTGTCTTCAGCACGATGTACCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6
CDS CAA 72 bp TCATCAAACTTGGTGCTGAAGAAAGCCGCAGAGTCTTaGGCTAACTTGGACAGGTGCAAGGCGCCAGTCACC +
Preference number: 6 (lower is better)
Translates to: SSNLVLKKAAES*ANLDRCKAPVT
Trigger: GGTGACTGGCGCCTTGCACCTGTCCAAGTTAGCCAAAGACTCTGCGGCTTTCTTCAGCACCAAGTTTGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026562.6