Pregenerated sensors for IFITM3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025492

Ensembl transcript IDs: ENSMUST00000026565.7

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	ACACCTGCGTGTAGGGAGGGGCAAGGAGGGACGCAGCTGCGGAGGGTGAAGCACACAGAAGCCGATCCGTaGGGTGCCCCCATCTCAGCC	+
Preference number: 4 (lower is better) Translates to: TPACREGQGGTQLRRVKHTEADP*GAPISA Trigger: GGCTGAGATGGGGGCACCGCACGGATCGGCTTCTGT...GTGCTTCACCCTCCGCAGCTGCGTCCCTCCTTGCCCCTCCCTACACGCAGGTGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026565.7
CDS-3UTR TCA 90 bp	GGAGGGGCAAGGAGGGACGCAGCTGCGGAGGGTGAAGCACTTCAGGACCGGAAGCCTCATATTCTTCCTTaGTTCTTTCGTAGTTTGGGG	+
Preference number: 4 (lower is better) Translates to: GGARRDAAAEGEALQDRKPHILP*FFRSLG Trigger: CCCCAAACTACGAAAGAATCAAGGAAGAATATGAGG...CTTCCGGTCCTGAAGTGCTTCACCCTCCGCAGCTGCGTCCCTCCTTGCCCCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026565.7
CDS-3UTR CAA 90 bp	GGAGGGGCAAGGAGGGACGCAGCTGCGGAGGGTGAAGCACTTCAGGACCGGAAGACCTCTCTGGGCATGTaGATCACAGTAGTTCTGACA	+
Preference number: 5 (lower is better) Translates to: GGARRDAAAEGEALQDRKTSLGM*ITVVLT Trigger: TGTCAGAACTACTGTGATCAACATGCCCAGAGAGGT...CTTCCGGTCCTGAAGTGCTTCACCCTCCGCAGCTGCGTCCCTCCTTGCCCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026565.7
CDS GCA 90 bp	GGGCATGTTGATCACAGTAGTTCTGACAGAAGCCGATCCGTGCGGTaGCCCCATCTCAGCCACCTCATATTCTTCCTTGATTCTTTCGTA	+
Preference number: 5 (lower is better) Translates to: GHVDHSSSDRSRSVR*PHLSHLIFFLDSFV Trigger: TACGAAAGAATCAAGGAAGAATATGAGGTGGCTGAGATGGGGGCACCGCACGGATCGGCTTCTGTCAGAACTACTGTGATCAACATGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026565.7
CDS CAA 72 bp	ACCACATGGTCAGGCACCGACACCTCTCTGGGCATGTaGATCACAGTAGTTCTGACAGAAGCCGATCCGTGC	+
Preference number: 6 (lower is better) Translates to: TTWSGTDTSLGM*ITVVLTEADPC Trigger: GCACGGATCGGCTTCTGTCAGAACTACTGTGATCAACATGCCCAGAGAGGTGTCGGTGCCTGACCATGTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026565.7
CDS GCA 72 bp	GATCACAGTAGTTCTGACAGAAGCCGATCCGTGCGGTaGCCCCATCTCAGCCACCTCATATTCTTCCTTGAT	+
Preference number: 6 (lower is better) Translates to: DHSSSDRSRSVR*PHLSHLIFFLD Trigger: ATCAAGGAAGAATATGAGGTGGCTGAGATGGGGGCACCGCACGGATCGGCTTCTGTCAGAACTACTGTGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026565.7