Pregenerated sensors for IFITM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060591

Ensembl transcript IDs: ENSMUST00000081649.10

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGGGTCCTCACAACAGCTaGGTTGCTGGGTTCCCCCAG	+
Preference number: 4 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQGPHNS*VAGFPQ Trigger: CTGGGGGAACCCAGCAACTCAGCTGTTGTGAGGACC...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS-3UTR TCA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGCCTCTCTGGGCATGTTaGTCACGGTGGTCCTCACAA	+
Preference number: 4 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQPLWAC*SRWSSQ Trigger: TTGTGAGGACCACCGTGATCAACATGCCCAGAGAGG...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS-3UTR GCA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGTCACAACAGCTGAGTTaGTGGGTTCCCCCAGCTCAG	+
Preference number: 4 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQSQQLS*WVPPAQ Trigger: CTGAGCTGGGGGAACCCAGCAACTCAGCTGTTGTGA...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS-3UTR CCA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGCAACAGCTGAGTTGCTaGGTTCCCCCAGCTCAGTCA	+
Preference number: 4 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQQQLSC*VPPAQS Trigger: TGACTGAGCTGGGGGAACCCAGCAACTCAGCTGTTG...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS-3UTR CCA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGGAAGCCCGGCATTGGTaGACAAGAAGGCTTGAGAAT	+
Preference number: 4 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQEARHW*TRRLEN Trigger: ATTCTCAAGCCTTCTTGTCCACCAATGCCGGGCTTC...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS-3UTR TCA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGCTTTGTGCAAAAGACTaGAAGACTACCACAGAGGTG	+
Preference number: 4 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQLCAKD*KTTTEV Trigger: CACCTCTGTGGTAGTCTTTCAGTCTTTTGCACAAAG...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS-3UTR GCA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGATGGGGTGTTCTTTGTaGAAAAGACTGAAAGACTAC	+
Preference number: 4 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQMGCSL*KRLKDY Trigger: GTAGTCTTTCAGTCTTTTGCACAAAGAACACCCCAT...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS-3UTR CAA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGCTCACAACAGCTGAGTaGCTGGGTTCCCCCAGCTCA	+
Preference number: 5 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQLTTAE*LGSPSS Trigger: TGAGCTGGGGGAACCCAGCAACTCAGCTGTTGTGAG...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS TCA 90 bp	GGGACCAGACCACATGGTCAGGCACCGACACCTCTCTGGGCATGTTaGTCACGGTGGTCCTCACAACAGCTGAGTTGCTGGGTTCCCCCA	+
Preference number: 5 (lower is better) Translates to: GTRPHGQAPTPLWAC*SRWSSQQLSCWVPP Trigger: TGGGGGAACCCAGCAACTCAGCTGTTGTGAGGACCACCGTGATCAACATGCCCAGAGAGGTGTCGGTGCCTGACCATGTGGTCTGGTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS-3UTR CAA 90 bp	CATTTGCATACGCGTAGGGTAAAGGGTCGAGGCTTGAGCCTGGGGGCGGGGCAGAGAATGGGGTGTTCTTaGTGCAAAAGACTGAAAGAC	+
Preference number: 5 (lower is better) Translates to: HLHTRRVKGRGLSLGAGQRMGCS*CKRLKD Trigger: GTCTTTCAGTCTTTTGCACAAAGAACACCCCATTCT...CTGCCCCGCCCCCAGGCTCAAGCCTCGACCCTTTACCCTACGCGTATGCAAATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS CCA 90 bp	CCCCAGCTCAGTCACCCCGTACTCCTCTTTGATTGTCTCATAGCTTaGAGGAAGCCCGGCATTGGTGGACAAGAAGGCTTGAGAATTGTG	+
Preference number: 5 (lower is better) Translates to: PQLSHPVLLFDCLIA*RKPGIGGQEGLRIV Trigger: CACAATTCTCAAGCCTTCTTGTCCACCAATGCCGGGCTTCCTCCAAGCTATGAGACAATCAAAGAGGAGTACGGGGTGACTGAGCTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS TCA 72 bp	CCACATGGTCAGGCACCGACACCTCTCTGGGCATGTTaGTCACGGTGGTCCTCACAACAGCTGAGTTGCTGG	+
Preference number: 6 (lower is better) Translates to: PHGQAPTPLWAC*SRWSSQQLSCW Trigger: CCAGCAACTCAGCTGTTGTGAGGACCACCGTGATCAACATGCCCAGAGAGGTGTCGGTGCCTGACCATGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS TCA 72 bp	TGGGTTCCCCCAGCTCAGTCACCCCGTACTCCTCTTTaGTTGTCTCATAGCTTGGAGGAAGCCCGGCATTGG	+
Preference number: 6 (lower is better) Translates to: WVPPAQSPRTPL*LSHSLEEARHW Trigger: CCAATGCCGGGCTTCCTCCAAGCTATGAGACAATCAAAGAGGAGTACGGGGTGACTGAGCTGGGGGAACCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081649.10
CDS CCA 72 bp	AGTCACCCCGTACTCCTCTTTGATTGTCTCATAGCTTaGAGGAAGCCCGGCATTGGTGGACAAGAAGGCTTG	+
Preference number: 6 (lower is better) Translates to: SHPVLLFDCLIA*RKPGIGGQEGL Trigger: CAAGCCTTCTTGTCCACCAATGCCGGGCTTCCTCCAAGCTATGAGACAATCAAAGAGGAGTACGGGGTGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081649.10