Pregenerated sensors for IFITM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025491Ensembl transcript IDs: ENSMUST00000026564.9, ENSMUST00000106040.8, ENSMUST00000106042.9
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGTCCACCATGGACAGATTTGTGAGTGTCACATTTGCATATGTATaGGGCAAATGGTCAGGACTAAGTCTAGGGTTTGGGGCAGCGATA | + |
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Preference number: 1 (lower is better) Translates to: ESTMDRFVSVTFAYV*GKWSGLSLGFGAAI Trigger: TATCGCTGCCCCAAACCCTAGACTTAGTCCTGACCATTTGCCCCATACATATGCAAATGTGACACTCACAAATCTGTCCATGGTGGACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| 3UTR CCA 72 bp | TTTGTGAGTGTCACATTTGCATATGTATGGGGCAAATaGTCAGGACTAAGTCTAGGGTTTGGGGCAGCGATA | + |
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Preference number: 3 (lower is better) Translates to: FVSVTFAYVWGK*SGLSLGFGAAI Trigger: TATCGCTGCCCCAAACCCTAGACTTAGTCCTGACCATTTGCCCCATACATATGCAAATGTGACACTCACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| CDS-3UTR CCA 90 bp | TCACAGCACGTGCACTTTATTGAGTCCACCATGGACAGATTTGTGAGTGTCACAGCAGAAGTTGAGATGTaGGGTGACCCCAGTACAACC | + |
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Preference number: 4 (lower is better) Translates to: SQHVHFIESTMDRFVSVTAEVEM*GDPSTT Trigger: GGTTGTACTGGGGTCACCCCACATCTCAACTTCTGC...TGTGACACTCACAAATCTGTCCATGGTGGACTCAATAAAGTGCACGTGCTGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| CDS-3UTR CCA 90 bp | GAGTGTCACATTTGCATATGTATGGGGCAAATGGTCAGGACTAAGTCTAGGGTTGCAGAAGTTGAGATGTaGGGTGACCCCAGTACAACC | + |
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Preference number: 4 (lower is better) Translates to: ECHICICMGQMVRTKSRVAEVEM*GDPSTT Trigger: GGTTGTACTGGGGTCACCCCACATCTCAACTTCTGC...AACCCTAGACTTAGTCCTGACCATTTGCCCCATACATATGCAAATGTGACACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| CDS-3UTR CCA 90 bp | AGTGTCACATTTGCATATGTATGGGGCAAATGGTCAGGACTAAGTCTAGGGTTTGCAGAAGTTGAGATGTaGGGTGACCCCAGTACAACC | + |
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Preference number: 4 (lower is better) Translates to: SVTFAYVWGKWSGLSLGFAEVEM*GDPSTT Trigger: GGTTGTACTGGGGTCACCCCACATCTCAACTTCTGC...AAACCCTAGACTTAGTCCTGACCATTTGCCCCATACATATGCAAATGTGACACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| CDS-3UTR CAA 90 bp | GGGTTTGGGGCAGCGATAGACAAGGAAACACATAGCAAGCCTGGGAGGCCCCAGGAGATCTCAGGCATGTaGATTGTGGTGGCTGTCGCA | + |
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Preference number: 5 (lower is better) Translates to: GFGAAIDKETHSKPGRPQEISGM*IVVAVA Trigger: TGCGACAGCCACCACAATCAACATGCCTGAGATCTC...CTGGGGCCTCCCAGGCTTGCTATGTGTTTCCTTGTCTATCGCTGCCCCAAACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| CDS-3UTR CAA 90 bp | CCTGGGAGGCCCCAGAATCTGTTATCTACTGTGAGATGTTGCAAGACATCTCACTGGCTGTCGCAGAAGTaGAGATGTGGGGTGACCCCA | + |
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Preference number: 5 (lower is better) Translates to: PGRPQNLLSTVRCCKTSHWLSQK*RCGVTP Trigger: TGGGGTCACCCCACATCTCAACTTCTGCGACAGCCA...GTGAGATGTCTTGCAACATCTCACAGTAGATAACAGATTCTGGGGCCTCCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| CDS-3UTR CAA 90 bp | ACACATAGCAAGCCTGGGAGGCCCCAGAATCTGTTATCTACTGTGAGATGTTGCGAGATCTCAGGCATGTaGATTGTGGTGGCTGTCGCA | + |
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Preference number: 5 (lower is better) Translates to: THSKPGRPQNLLSTVRCCEISGM*IVVAVA Trigger: TGCGACAGCCACCACAATCAACATGCCTGAGATCTC...GCAACATCTCACAGTAGATAACAGATTCTGGGGCCTCCCAGGCTTGCTATGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| CDS-3UTR CAA 90 bp | AGTGTCACATTTGCATATGTATGGGGCAAATGGTCAGGACTAAGTCTAGGGTTTTGGCTGTCGCAGAAGTaGAGATGTGGGGTGACCCCA | + |
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Preference number: 5 (lower is better) Translates to: SVTFAYVWGKWSGLSLGFWLSQK*RCGVTP Trigger: TGGGGTCACCCCACATCTCAACTTCTGCGACAGCCA...AAACCCTAGACTTAGTCCTGACCATTTGCCCCATACATATGCAAATGTGACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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| CDS-3UTR CAA 90 bp | AGTGTCACATTTGCATATGTATGGGGCAAATGGTCAGGACTAAGTCTAGGGTTTGAGATCTCAGGCATGTaGATTGTGGTGGCTGTCGCA | + |
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Preference number: 5 (lower is better) Translates to: SVTFAYVWGKWSGLSLGFEISGM*IVVAVA Trigger: TGCGACAGCCACCACAATCAACATGCCTGAGATCTC...AAACCCTAGACTTAGTCCTGACCATTTGCCCCATACATATGCAAATGTGACACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026564.9 ENSMUST00000106040.8 ENSMUST00000106042.9 |
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