Pregenerated sensors for IFIT3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062488Ensembl transcript IDs: ENSMUST00000076249.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGTCTGTCTGCACTCTGACACACTTCCGGTTGTCCTCAGGTTCATaGTGCCAGGAAAAGCCTGCCTGTGCCCCAAAGTGTGTTGCCTCC | + |
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Preference number: 1 (lower is better) Translates to: LSVCTLTHFRLSSGS*CQEKPACAPKCVAS Trigger: GGAGGCAACACACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGTGCAGACAGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR TCA 90 bp | CCCATAAGCAGCACTGCACAGCACATCTGTCTCACAGTACAGAGCTaGGAGACTGTCTGTCTGCACTCTGACACACTTCCGGTTGTCCTC | + |
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Preference number: 1 (lower is better) Translates to: PISSTAQHICLTVQS*ETVCLHSDTLPVVL Trigger: GAGGACAACCGGAAGTGTGTCAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTGCAGTGCTGCTTATGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACACACACACTCACACACACACAGCCCTAAAACCACAGCCACTCATTTATCCCTaGAACTGCCAAGAATCCACC | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHTHTHTALKPQPLIYP*NCQEST Trigger: GGTGGATTCTTGGCAGTTGCAGGGATAAATGAGTGG...CTGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR-3UTR GCA 90 bp | AGAGGAGTCAGGGAGAGAAAGCAGTTCCTTAAAGACACAATCAAGAGCAGCTTGTGGCAGGAAGGCTCATaGTTTTCCAGCCCATTGTCC | + |
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Preference number: 2 (lower is better) Translates to: RGVRERKQFLKDTIKSSLWQEGS*FSSPLS Trigger: GGACAATGGGCTGGAAAAGCATGAGCCTTCCTGCCA...CAAGCTGCTCTTGATTGTGTCTTTAAGGAACTGCTTTCTCTCCCTGACTCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR-3UTR CCA 90 bp | CACACACACACACACACACACACACACTCACACACACACAGCCCTAAAACCACAAATGTGATCAAAAGGTaGTCTGTGAGCTTTAAGCCC | + |
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Preference number: 2 (lower is better) Translates to: HTHTHTHTHSHTHSPKTTNVIKR*SVSFKP Trigger: GGGCTTAAAGCTCACAGACCACCTTTTGATCACATT...TGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR-3UTR GCA 90 bp | CCTTGGGCAAAGGTTAATCCTTCAGGGTTAAGCAACTACAGTGAAATGGAATTACCCCATAAGCAGCACTaGACAGCACATCTGTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: PWAKVNPSGLSNYSEMELPHKQH*TAHLSH Trigger: GTGAGACAGATGTGCTGTGCAGTGCTGCTTATGGGG...TAATTCCATTTCACTGTAGTTGCTTAACCCTGAAGGATTAACCTTTGCCCAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR-3UTR TCA 90 bp | ACACACACACACACACACACACACACTCACACACACACAGCCCTAAAACCACAGAGTAATGAGGTTTGCTaGCTGGAAAATTATATGGCT | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHTHTHTALKPQSNEVC*LENYMA Trigger: AGCCATATAATTTTCCAGTCAGCAAACCTCATTACT...CTGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR-3UTR GCA 90 bp | GACACAATCAAGAGCAGCTTGTCAGCAATCCTTGGCAGGAAGGCTCATGCTTTTATTTATCCCTGCAACTaGCAAGAATCCACCAAAATT | + |
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Preference number: 2 (lower is better) Translates to: DTIKSSLSAILGRKAHAFIYPCN*QESTKI Trigger: AATTTTGGTGGATTCTTGGCAGTTGCAGGGATAAAT...AAAAGCATGAGCCTTCCTGCCAAGGATTGCTGACAAGCTGCTCTTGATTGTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR GCA 72 bp | CCGGTTGTCCTCAGGTTCATGGTGCCAGGAAAAGCCTaGCTGTGCCCCAAAGTGTGTTGCCTCCCAAACCCC | + |
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Preference number: 3 (lower is better) Translates to: PVVLRFMVPGKA*LCPKVCCLPNP Trigger: GGGGTTTGGGAGGCAACACACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR CCA 72 bp | TGCACTCTGACACACTTCCGGTTGTCCTCAGGTTCATaGTGCCAGGAAAAGCCTGCCTGTGCCCCAAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: CTLTHFRLSSGS*CQEKPACAPKC Trigger: ACACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR TCA 72 bp | CACAGTACAGAGCTGAGAGACTGTCTGTCTGCACTCTaGCACACTTCCGGTTGTCCTCAGGTTCATGGTGCC | + |
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Preference number: 3 (lower is better) Translates to: HSTELRDCLSAL*HTSGCPQVHGA Trigger: GGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR GCA 72 bp | ACTCTGACACACTTCCGGTTGTCCTCAGGTTCATGGTaGCAGGAAAAGCCTGCCTGTGCCCCAAAGTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: TLTHFRLSSGSW*QEKPACAPKCV Trigger: AACACACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR TCA 72 bp | AGCACTGCACAGCACATCTGTCTCACAGTACAGAGCTaGGAGACTGTCTGTCTGCACTCTGACACACTTCCG | + |
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Preference number: 3 (lower is better) Translates to: STAQHICLTVQS*ETVCLHSDTLP Trigger: CGGAAGTGTGTCAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTGCAGTGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR-3UTR CAA 90 bp | CACACACACACACACACACACACACACTCACACACACACAGCCCTAAAACCACACTGACACACTTCCGGTaGTCCTCAGGTTCATGGTGC | + |
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Preference number: 3 (lower is better) Translates to: HTHTHTHTHSHTHSPKTTLTHFR*SSGSWC Trigger: GCACCATGAACCTGAGGACAACCGGAAGTGTGTCAG...TGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR-3UTR CAA 90 bp | GGAGTCAGGGAGAGAAAGCAGTTCCTTAAAGACACAATCAAGAGCAGCTTGTCAGTGCCCCAAAGTGTGTaGCCTCCCAAACCCCTAACC | + |
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Preference number: 3 (lower is better) Translates to: GVRERKQFLKDTIKSSLSVPQSV*PPKPLT Trigger: GGTTAGGGGTTTGGGAGGCAACACACTTTGGGGCAC...TGACAAGCTGCTCTTGATTGTGTCTTTAAGGAACTGCTTTCTCTCCCTGACTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR GCA 72 bp | CATGCTTTTCCAGCCCATTGTCCCCATAAGCAGCACTaGACAGCACATCTGTCTCACAGTACAGAGCTGAGA | + |
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Preference number: 3 (lower is better) Translates to: HAFPAHCPHKQH*TAHLSHSTELR Trigger: TCTCAGCTCTGTACTGTGAGACAGATGTGCTGTGCAGTGCTGCTTATGGGGACAATGGGCTGGAAAAGCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| 3UTR TCA 72 bp | AGCCCCATTCCCTACATGATTAGTAATGAGGTTTGCTaGCTGGAAAATTATATGGCTAGGATGACCAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: SPIPYMISNEVC*LENYMARMTRG Trigger: TCCTCTGGTCATCCTAGCCATATAATTTTCCAGTCAGCAAACCTCATTACTAATCATGTAGGGAATGGGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR TCA 90 bp | CACAATCAAGAGCAGCTTGTCAGCAATCCTTGGCAGGAAGGCTCATGCTTTTCCCCCTGTAACGGCACATaGCCAAAGAGTAGAGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: HNQEQLVSNPWQEGSCFSPCNGT*PKSRGD Trigger: GTCCCCTCTACTCTTTGGTCATGTGCCGTTACAGGG...GGAAAAGCATGAGCCTTCCTGCCAAGGATTGCTGACAAGCTGCTCTTGATTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR TCA 90 bp | TGTGCCCCAAAGTGTGTTGCCTCCCAAACCCCTAACCCATTCAGCCACTCATTTTTCACGTACTGGTTCTaGGGATTCAACTCCATGGCC | + |
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Preference number: 4 (lower is better) Translates to: CAPKCVASQTPNPFSHSFFTYWF*GFNSMA Trigger: GGCCATGGAGTTGAATCCTCAGAACCAGTACGTGAA...AAATGAGTGGCTGAATGGGTTAGGGGTTTGGGAGGCAACACACTTTGGGGCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR GCA 90 bp | CACACACACACACACACACACTCACACACACACAGCCCTAAAACCACAGTAGAACAAACACTCCAGGGCTaGGAGGTCTTCAGACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHSHTHSPKTTVEQTLQG*EVFRLP Trigger: AGGAAGTCTGAAGACCTCGCAGCCCTGGAGTGTTTG...TTCTACTGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CCA 90 bp | TGTGCCCCAAAGTGTGTTGCCTCCCAAACCCCTAACCCATTCAGCCACTCATTTATGGCACTTCAGCTGTaGAAGGATTGCTTCCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: CAPKCVASQTPNPFSHSFMALQL*KDCFQR Trigger: TCTCTGGAAGCAATCCTTCCACAGCTGAAGTGCCAT...AAATGAGTGGCTGAATGGGTTAGGGGTTTGGGAGGCAACACACTTTGGGGCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR GCA 90 bp | TGTGCCCCAAAGTGTGTTGCCTCCCAAACCCCTAACCCATTCAGCCACTCATTTGCATCCACGGAGAACTaGTTCTCAGGTTTTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: CAPKCVASQTPNPFSHSFASTEN*FSGFSS Trigger: AGAAGAAAAACCTGAGAAGCAGTTCTCCGTGGATGC...AAATGAGTGGCTGAATGGGTTAGGGGTTTGGGAGGCAACACACTTTGGGGCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR TCA 90 bp | TCCTTAAAGACACAATCAAGAGCAGCTTGTCAGCAATCCTTGGCAGGAAGGCTCCGGCGAATTTCTGCTTaGTCTTTGTGCTCTGACTTC | + |
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Preference number: 4 (lower is better) Translates to: SLKTQSRAACQQSLAGRLRRISA*SLCSDF Trigger: GAAGTCAGAGCACAAAGATCAAGCAGAAATTCGCCG...GAGCCTTCCTGCCAAGGATTGCTGACAAGCTGCTCTTGATTGTGTCTTTAAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR GCA 90 bp | CAAACCCCTAACCCATTCAGCCACTCATTTATCCCTGCAACTGCCAAGAATCCAGTTCTGGGCATTCCATaGTGTAAGGATTCGCAAACT | + |
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Preference number: 4 (lower is better) Translates to: QTPNPFSHSFIPATAKNPVLGIP*CKDSQT Trigger: AGTTTGCGAATCCTTACAGCATGGAATGCCCAGAAC...TGGATTCTTGGCAGTTGCAGGGATAAATGAGTGGCTGAATGGGTTAGGGGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CCA 90 bp | CATTCAGCCACTCATTTATCCCTGCAACTGCCAAGAATCCACCAAAATTTCATAAGCACTCTGGGTCCTTaGGCTTCTCTTCTAGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: HSATHLSLQLPRIHQNFISTLGP*ASLLEP Trigger: AGGCTCTAGAAGAGAAGCCCAAGGACCCAGAGTGCT...TATGAAATTTTGGTGGATTCTTGGCAGTTGCAGGGATAAATGAGTGGCTGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CCA 90 bp | GGAGTCAGGGAGAGAAAGCAGTTCCTTAAAGACACAATCAAGAGCAGCTTGTCATTGACCTTTCATTTCTaGGAAACTGCAACAAACACT | + |
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Preference number: 4 (lower is better) Translates to: GVRERKQFLKDTIKSSLSLTFHF*ETATNT Trigger: AGTGTTTGTTGCAGTTTCCCAGAAATGAAAGGTCAA...TGACAAGCTGCTCTTGATTGTGTCTTTAAGGAACTGCTTTCTCTCCCTGACTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS CCA 90 bp | CATCCACGGAGAACTGCTTCTCAGGTTTTTCTTCTAGGCGGAACATaGCGATGGCCATCCCAGAGGAGCACTCTGGGTCCTTGGGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: HPRRTASQVFLLGGT*RWPSQRSTLGPWAS Trigger: AGAAGCCCAAGGACCCAGAGTGCTCCTCTGGGATGGCCATCGCCATGTTCCGCCTAGAAGAAAAACCTGAGAAGCAGTTCTCCGTGGATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CAA 90 bp | GCCTCCCAAACCCCTAACCCATTCAGCCACTCATTTATCCCTGCAACTGCCAAGTCAGCTGTGGAAGGATaGCTTCCAGAGATTCCCGGT | + |
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Preference number: 5 (lower is better) Translates to: ASQTPNPFSHSFIPATAKSAVEG*LPEIPG Trigger: ACCGGGAATCTCTGGAAGCAATCCTTCCACAGCTGA...CTTGGCAGTTGCAGGGATAAATGAGTGGCTGAATGGGTTAGGGGTTTGGGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CAA 90 bp | CCAAAGTGTGTTGCCTCCCAAACCCCTAACCCATTCAGCCACTCATTTATCCCTGAGCACTCTGGGTCCTaGGGCTTCTCTTCTAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: PKCVASQTPNPFSHSFIPEHSGS*GFSSRA Trigger: GGCTCTAGAAGAGAAGCCCAAGGACCCAGAGTGCTC...AGGGATAAATGAGTGGCTGAATGGGTTAGGGGTTTGGGAGGCAACACACTTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS CCA 90 bp | GGGCCAGGAGAACTTTCACGTACTGGTTCTGAGGATTCAACTCCATaGCCTGCTTCAGAGCATCCACGGAGAACTGCTTCTCAGGTTTTT | + |
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Preference number: 5 (lower is better) Translates to: GPGELSRTGSEDSTP*PASEHPRRTASQVF Trigger: AAAAACCTGAGAAGCAGTTCTCCGTGGATGCTCTGAAGCAGGCCATGGAGTTGAATCCTCAGAACCAGTACGTGAAAGTTCTCCTGGCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS TCA 90 bp | CTCCTTTATTCTGTAGCTGCTCCAGTATTTCCCTGTAACGGCACATaGCCAAAGAGTAGAGGGGACTGTTGTTCACTGTGGATCGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: LLYSVAAPVFPCNGT*PKSRGDCCSLWIAV Trigger: CACTGCGATCCACAGTGAACAACAGTCCCCTCTACTCTTTGGTCATGTGCCGTTACAGGGAAATACTGGAGCAGCTACAGAATAAAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CAA 90 bp | ACACACACACACACACACACACACACTCACACACACACAGCCCTAAAACCACAGCCTCTTCCTTCTCGATaGACCTTTCATTTCTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: THTHTHTHTHTHTALKPQPLPSR*TFHFWE Trigger: TTCCCAGAAATGAAAGGTCAATCGAGAAGGAAGAGG...CTGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CAA 90 bp | CACACACACACACACACACACACACACTCACACACACACAGCCCTAAAACCACACCAATAAGTCATACATaGTTGCCTTCTCCTCAGAGT | + |
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Preference number: 5 (lower is better) Translates to: HTHTHTHTHSHTHSPKTTPISHT*LPSPQS Trigger: ACTCTGAGGAGAAGGCAACAATGTATGACTTATTGG...TGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CAA 90 bp | GACACAATCAAGAGCAGCTTGTCAGCAATCCTTGGCAGGAAGGCTCATGCTTTTAGGATTCGCAAACTTTaGGCAAACTTGTCTCACCTT | + |
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Preference number: 5 (lower is better) Translates to: DTIKSSLSAILGRKAHAFRIRKL*ANLSHL Trigger: AAGGTGAGACAAGTTTGCCAAAAGTTTGCGAATCCT...AAAAGCATGAGCCTTCCTGCCAAGGATTGCTGACAAGCTGCTCTTGATTGTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS TCA 90 bp | TCAGAGTTTAAATGTTCGAGCTGGTTGCACACCCTGTCTTCCATATaGCTGGACATACTTCCTTCCCTGAATAAATTCCAGGTGAAATGG | + |
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Preference number: 5 (lower is better) Translates to: SEFKCSSWLHTLSSI*LDILPSLNKFQVKW Trigger: CCATTTCACCTGGAATTTATTCAGGGAAGGAAGTATGTCCAGTCATATGGAAGACAGGGTGTGCAACCAGCTCGAACATTTAAACTCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS-3UTR CAA 90 bp | CCTTGGGCAAAGGTTAATCCTTCAGGGTTAAGCAACTACAGTGAAATGGAATTATTGGAGGACATCCGTTaGATTAGGAGCTTTCCCCAA | + |
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Preference number: 5 (lower is better) Translates to: PWAKVNPSGLSNYSEMELLEDIR*IRSFPQ Trigger: TTGGGGAAAGCTCCTAATCAAACGGATGTCCTCCAA...TAATTCCATTTCACTGTAGTTGCTTAACCCTGAAGGATTAACCTTTGCCCAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS CCA 72 bp | AGAACTGCTTCTCAGGTTTTTCTTCTAGGCGGAACATaGCGATGGCCATCCCAGAGGAGCACTCTGGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: RTASQVFLLGGT*RWPSQRSTLGP Trigger: AGGACCCAGAGTGCTCCTCTGGGATGGCCATCGCCATGTTCCGCCTAGAAGAAAAACCTGAGAAGCAGTTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS GCA 72 bp | TTCATTTCTGGGAAACTGCAACAAACACTCCAGGGCTaGGAGGTCTTCAGACTTCCTGTGGTACTCCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: FISGKLQQTLQG*EVFRLPVVLLE Trigger: CTCCAGGAGTACCACAGGAAGTCTGAAGACCTCGCAGCCCTGGAGTGTTTGTTGCAGTTTCCCAGAAATGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS TCA 72 bp | TCTGTAGCTGCTCCAGTATTTCCCTGTAACGGCACATaGCCAAAGAGTAGAGGGGACTGTTGTTCACTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SVAAPVFPCNGT*PKSRGDCCSLW Trigger: CCACAGTGAACAACAGTCCCCTCTACTCTTTGGTCATGTGCCGTTACAGGGAAATACTGGAGCAGCTACAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS CCA 72 bp | GAACTTTCACGTACTGGTTCTGAGGATTCAACTCCATaGCCTGCTTCAGAGCATCCACGGAGAACTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: ELSRTGSEDSTP*PASEHPRRTAS Trigger: AGAAGCAGTTCTCCGTGGATGCTCTGAAGCAGGCCATGGAGTTGAATCCTCAGAACCAGTACGTGAAAGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS CAA 90 bp | TTTCGCCATCTAGGTGCTTTATGTAGGCCAATAAGTCATACATTGTaGCCTTCTCCTCAGAGTTTAAATGTTCGAGCTGGTTGCACACCC | + |
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Preference number: 6 (lower is better) Translates to: FRHLGALCRPISHTL*PSPQSLNVRAGCTP Trigger: GGGTGTGCAACCAGCTCGAACATTTAAACTCTGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAGATGGCGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS TCA 72 bp | AAATGTTCGAGCTGGTTGCACACCCTGTCTTCCATATaGCTGGACATACTTCCTTCCCTGAATAAATTCCAG | + |
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Preference number: 6 (lower is better) Translates to: KCSSWLHTLSSI*LDILPSLNKFQ Trigger: CTGGAATTTATTCAGGGAAGGAAGTATGTCCAGTCATATGGAAGACAGGGTGTGCAACCAGCTCGAACATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS CAA 90 bp | TGCTTTCGCCATCTAGGTGCTTTATGTAGGCCAATAAGTCATACATaGTTGCCTTCTCCTCAGAGTTTAAATGTTCGAGCTGGTTGCACA | + |
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Preference number: 6 (lower is better) Translates to: CFRHLGALCRPISHT*LPSPQSLNVRAGCT Trigger: TGTGCAACCAGCTCGAACATTTAAACTCTGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAGATGGCGAAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS CAA 72 bp | CTAGGTGCTTTATGTAGGCCAATAAGTCATACATTGTaGCCTTCTCCTCAGAGTTTAAATGTTCGAGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: LGALCRPISHTL*PSPQSLNVRAG Trigger: ACCAGCTCGAACATTTAAACTCTGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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| CDS CAA 72 bp | CATCTAGGTGCTTTATGTAGGCCAATAAGTCATACATaGTTGCCTTCTCCTCAGAGTTTAAATGTTCGAGCT | + |
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Preference number: 6 (lower is better) Translates to: HLGALCRPISHT*LPSPQSLNVRA Trigger: AGCTCGAACATTTAAACTCTGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076249.6 |
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