Pregenerated sensors for IFIT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074896Ensembl transcript IDs: ENSMUST00000102825.4
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGTCTGTCTGCACTCTGACACACTTCCGGTTGTCCTCAGGTTCATaGTGCCAGGAAAAGCCTGCCTGTGCCCCAAAGTGCGTTGCCTCC | + |
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Preference number: 1 (lower is better) Translates to: LSVCTLTHFRLSSGS*CQEKPACAPKCVAS Trigger: GGAGGCAACGCACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGTGCAGACAGACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR TCA 90 bp | CCCATAAGCAGCACTCCACAGCACATCTGTCTCACAGTACAGAGCTaGGAGACTGTCTGTCTGCACTCTGACACACTTCCGGTTGTCCTC | + |
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Preference number: 1 (lower is better) Translates to: PISSTPQHICLTVQS*ETVCLHSDTLPVVL Trigger: GAGGACAACCGGAAGTGTGTCAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTGGAGTGCTGCTTATGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR TCA 90 bp | CATCTGTCTCACAGTACAGAGCTGAGAGACTGTCTGTCTGCACTCTaGCACACTTCCGGTTGTCCTCAGGTTCATGGTGCCAGGAAAAGC | + |
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Preference number: 1 (lower is better) Translates to: HLSHSTELRDCLSAL*HTSGCPQVHGARKS Trigger: GCTTTTCCTGGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR GCA 90 bp | CGTTGCCTCCCAAACCCCAAAACCATTCAGCCACTCCTTTATCCCTaGAACTGCCAAGAATCCACCACAATTTGCTACTGGAGGTTAAGA | + |
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Preference number: 1 (lower is better) Translates to: RCLPNPKTIQPLLYP*NCQESTTICYWRLR Trigger: TCTTAACCTCCAGTAGCAAATTGTGGTGGATTCTTGGCAGTTGCAGGGATAAAGGAGTGGCTGAATGGTTTTGGGGTTTGGGAGGCAACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR CAA 90 bp | TACAGAGCTGAGAGACTGTCTGTCTGCACTCTGACACACTTCCGGTaGTCCTCAGGTTCATGGTGCCAGGAAAAGCCTGCCTGTGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: YRAERLSVCTLTHFR*SSGSWCQEKPACAP Trigger: TGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGTGCAGACAGACAGTCTCTCAGCTCTGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR-3UTR GCA 90 bp | CACAGCACATCTGTCTCACAGTACAGAGCTGAGAGACTGTCTGTCTGCACTCTGGTGCCAGGAAAAGCCTaGCTGTGCCCCAAAGTGCGT | + |
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Preference number: 2 (lower is better) Translates to: HSTSVSQYRAERLSVCTLVPGKA*LCPKVR Trigger: ACGCACTTTGGGGCACAGGCAGGCTTTTCCTGGCAC...CAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR-3UTR CCA 90 bp | GCACTCCACAGCACATCTGTCTCACAGTACAGAGCTGAGAGACTGTCTGTCTGCTTGTCCTCAGGTTCATaGTGCCAGGAAAAGCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: ALHSTSVSQYRAERLSVCLSSGS*CQEKPA Trigger: GGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAA...GCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTGGAGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR-3UTR GCA 90 bp | AAGCAGTTCCTTAAAGAAACAATCAAGAGCAGTTTGTCAGCAATCCTTGGCAGGTCCTCAGGTTCATGGTaGCAGGAAAAGCCTGCCTGT | + |
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Preference number: 2 (lower is better) Translates to: KQFLKETIKSSLSAILGRSSGSW*QEKPAC Trigger: ACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGA...CCTGCCAAGGATTGCTGACAAACTGCTCTTGATTGTTTCTTTAAGGAACTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR GCA 72 bp | CCGGTTGTCCTCAGGTTCATGGTGCCAGGAAAAGCCTaGCTGTGCCCCAAAGTGCGTTGCCTCCCAAACCCC | + |
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Preference number: 3 (lower is better) Translates to: PVVLRFMVPGKA*LCPKVRCLPNP Trigger: GGGGTTTGGGAGGCAACGCACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR CCA 72 bp | TGCACTCTGACACACTTCCGGTTGTCCTCAGGTTCATaGTGCCAGGAAAAGCCTGCCTGTGCCCCAAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: CTLTHFRLSSGS*CQEKPACAPKC Trigger: GCACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR GCA 72 bp | ACTCTGACACACTTCCGGTTGTCCTCAGGTTCATGGTaGCAGGAAAAGCCTGCCTGTGCCCCAAAGTGCGTT | + |
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Preference number: 3 (lower is better) Translates to: TLTHFRLSSGSW*QEKPACAPKCV Trigger: AACGCACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTGAGGACAACCGGAAGTGTGTCAGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR TCA 72 bp | AGCACTCCACAGCACATCTGTCTCACAGTACAGAGCTaGGAGACTGTCTGTCTGCACTCTGACACACTTCCG | + |
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Preference number: 3 (lower is better) Translates to: STPQHICLTVQS*ETVCLHSDTLP Trigger: CGGAAGTGTGTCAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTGGAGTGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR GCA 72 bp | TCTGTCTCACAGTACAGAGCTGAGAGACTGTCTGTCTaGACTCTGACACACTTCCGGTTGTCCTCAGGTTCA | + |
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Preference number: 3 (lower is better) Translates to: SVSQYRAERLSV*TLTHFRLSSGS Trigger: TGAACCTGAGGACAACCGGAAGTGTGTCAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR GCA 72 bp | CCAAACCCCAAAACCATTCAGCCACTCCTTTATCCCTaGAACTGCCAAGAATCCACCACAATTTGCTACTGG | + |
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Preference number: 3 (lower is better) Translates to: PNPKTIQPLLYP*NCQESTTICYW Trigger: CCAGTAGCAAATTGTGGTGGATTCTTGGCAGTTGCAGGGATAAAGGAGTGGCTGAATGGTTTTGGGGTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR TCA 72 bp | ATGAGGTTTGCTGACTGGAAAATTGTATGGCTAGGATaGGCAGAGGAGTCAGGGAGAGAAAGCAGTTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: MRFADWKIVWLG*AEESGRESSSL Trigger: TAAGGAACTGCTTTCTCTCCCTGACTCCTCTGCTCATCCTAGCCATACAATTTTCCAGTCAGCAAACCTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR TCA 72 bp | AGCTCCATTCCCTACATGATTAGTAATGAGGTTTGCTaGCTGGAAAATTGTATGGCTAGGATGAGCAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: SSIPYMISNEVC*LENCMARMSRG Trigger: TCCTCTGCTCATCCTAGCCATACAATTTTCCAGTCAGCAAACCTCATTACTAATCATGTAGGGAATGGAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR CCA 90 bp | CAGGTTCATGGTGCCAGGAAAAGCCTGCCTGTGCCCCAAAGTGCGTTGCCTCCCGACTGTTGTTCACTGTaGATCGCAGTGCTTTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: QVHGARKSLPVPQSALPPDCCSL*IAVLFQ Trigger: TTGGAAAAGCACTGCGATCCACAGTGAACAACAGTC...GGGAGGCAACGCACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCATGAACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR TCA 90 bp | GCACTCCACAGCACATCTGTCTCACAGTACAGAGCTGAGAGACTGTCTGTCTGCGGACTTCGCCTCCTCTaGAGAGTCTTCTGCATGAAC | + |
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Preference number: 4 (lower is better) Translates to: ALHSTSVSQYRAERLSVCGLRLL*RVFCMN Trigger: GTTCATGCAGAAGACTCTTCAGAGGAGGCGAAGTCC...GCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTGGAGTGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR GCA 90 bp | ATGGTGCCAGGAAAAGCCTGCCTGTGCCCCAAAGTGCGTTGCCTCCCAAACCCCTCATTTCTGGGAAATTaGAACAAACACTCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: MVPGKACLCPKVRCLPNPSFLGN*NKHSRA Trigger: AGCCCTGGAGTGTTTGTTGCAATTTCCCAGAAATGA...GGGGTTTGGGAGGCAACGCACTTTGGGGCACAGGCAGGCTTTTCCTGGCACCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR CCA 90 bp | CACAGCACATCTGTCTCACAGTACAGAGCTGAGAGACTGTCTGTCTGCACTCTGCCCAGAGGAGCACTCTaGGTCCTTTGGCTTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HSTSVSQYRAERLSVCTLPRGAL*VLWLLF Trigger: GAAGAGAAGCCAAAGGACCCAGAGTGCTCCTCTGGG...CAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR CCA 90 bp | GTTGCCTCCCAAACCCCAAAACCATTCAGCCACTCCTTTATCCCTGCAACTGCCTCTTCAGACTTCCTGTaGTACTCCTGGAGGTTGCAA | + |
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Preference number: 4 (lower is better) Translates to: VASQTPKPFSHSFIPATASSDFL*YSWRLQ Trigger: TTGCAACCTCCAGGAGTACCACAGGAAGTCTGAAGA...GGCAGTTGCAGGGATAAAGGAGTGGCTGAATGGTTTTGGGGTTTGGGAGGCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR TCA 90 bp | AGTGCGTTGCCTCCCAAACCCCAAAACCATTCAGCCACTCCTTTATCCCTGCAAACCCTGTCTTCCATATaGCTGGACATACTTCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: SALPPKPQNHSATPLSLQTLSSI*LDILPS Trigger: GGAAGGAAGTATGTCCAGTCATATGGAAGACAGGGT...TTGCAGGGATAAAGGAGTGGCTGAATGGTTTTGGGGTTTGGGAGGCAACGCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR CCA 90 bp | AAGTGCGTTGCCTCCCAAACCCCAAAACCATTCAGCCACTCCTTTATCCCTGCAAAATTCCAGGTGAAATaGCACTTCAGCTGTGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: KCVASQTPKPFSHSFIPAKFQVK*HFSCGR Trigger: CCTTCCACAGCTGAAGTGCCATTTCACCTGGAATTT...TGCAGGGATAAAGGAGTGGCTGAATGGTTTTGGGGTTTGGGAGGCAACGCACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR TCA 90 bp | CATTCAGCCACTCCTTTATCCCTGCAACTGCCAAGAATCCACCACAATTTGCTAGAAGAGTCTTCTGCATaGACTCCATCGTTAATCGTC | + |
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Preference number: 4 (lower is better) Translates to: HSATPLSLQLPRIHHNLLEESSA*TPSLIV Trigger: GACGATTAACGATGGAGTTCATGCAGAAGACTCTTC...TAGCAAATTGTGGTGGATTCTTGGCAGTTGCAGGGATAAAGGAGTGGCTGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR GCA 90 bp | CATTCAGCCACTCCTTTATCCCTGCAACTGCCAAGAATCCACCACAATTTGCTAAATGTTCGACCTGGTTaGACACCCTGTCTTCCATAT | + |
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Preference number: 4 (lower is better) Translates to: HSATPLSLQLPRIHHNLLNVRPG*TPCLPY Trigger: ATATGGAAGACAGGGTGTGCAACCAGGTCGAACATT...TAGCAAATTGTGGTGGATTCTTGGCAGTTGCAGGGATAAAGGAGTGGCTGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR CCA 90 bp | AGAGAAAGCAGTTCCTTAAAGAAACAATCAAGAGCAGTTTGTCAGCAATCCTTGGAGGATTCAACTCCATaGCCTGCTTCAGAGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: RESSSLKKQSRAVCQQSLEDSTP*PASEHP Trigger: TGGATGCTCTGAAGCAGGCCATGGAGTTGAATCCTC...CAAGGATTGCTGACAAACTGCTCTTGATTGTTTCTTTAAGGAACTGCTTTCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| 3UTR CAA 72 bp | AGAAAGCAGTTCCTTAAAGAAACAATCAAGAGCAGTTaGTCAGCAATCCTTGGCAGGAAGGCTCATGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: RKQFLKETIKSS*SAILGRKAHAF Trigger: AAAAGCATGAGCCTTCCTGCCAAGGATTGCTGACAAACTGCTCTTGATTGTTTCTTTAAGGAACTGCTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR TCA 90 bp | AGAGAAAGCAGTTCCTTAAAGAAACAATCAAGAGCAGTTTGTCAGCAATCCTTGCTCTTCCTTCTCGATTaGCCTTTCATTTCTGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: RESSSLKKQSRAVCQQSLLFLLD*PFISGK Trigger: TTTCCCAGAAATGAAAGGTCAATCGAGAAGGAAGAG...CAAGGATTGCTGACAAACTGCTCTTGATTGTTTCTTTAAGGAACTGCTTTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS CCA 90 bp | CGGAGAACTGCTTCTCAGGTTTTTCTTCTAGGCGGAACATGGCGATaGCCATCCCAGAGGAGCACTCTGGGTCCTTTGGCTTCTCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: RRTASQVFLLGGTWR*PSQRSTLGPLASLL Trigger: TAGAAGAGAAGCCAAAGGACCCAGAGTGCTCCTCTGGGATGGCCATCGCCATGTTCCGCCTAGAAGAAAAACCTGAGAAGCAGTTCTCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR CAA 90 bp | CACAGCACATCTGTCTCACAGTACAGAGCTGAGAGACTGTCTGTCTGCACTCTGAGCACTCTGGGTCCTTaGGCTTCTCTTCTAGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: HSTSVSQYRAERLSVCTLSTLGP*ASLLEP Trigger: AGGCTCTAGAAGAGAAGCCAAAGGACCCAGAGTGCT...CAGAGTGCAGACAGACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS TCA 90 bp | CTCCTTTATTCTGTAGCTGCTCCAGTATTTCCCTGTAACGGCACATaGCCAAAGAGTAGAGAGGACTGTTGTTCACTGTGGATCGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: LLYSVAAPVFPCNGT*PKSREDCCSLWIAV Trigger: CACTGCGATCCACAGTGAACAACAGTCCTCTCTACTCTTTGGTCATGTGCCGTTACAGGGAAATACTGGAGCAGCTACAGAATAAAGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS TCA 90 bp | GACCATCTGATAGCATCTCTCTACTTCCGGGAAATCGATGAGATCTaGGTAGGAGTTCAAAGGACTTCGCCTCCTCTGAAGAGTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: DHLIASLYFREIDEI*VGVQRTSPPLKSLL Trigger: CAGAAGACTCTTCAGAGGAGGCGAAGTCCTTTGAACTCCTACTCAGATCTCATCGATTTCCCGGAAGTAGAGAGATGCTATCAGATGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS GCA 90 bp | ACTTCCTTAAATCTTCAGCTTGCCCTAAGCACTCCAGGGCGGCCTTaGTTTCGCCATCTAGGTGCTTTATGTAGGCCAATAAGTCATACA | + |
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Preference number: 5 (lower is better) Translates to: TSLNLQLALSTPGRP*FRHLGALCRPISHT Trigger: TGTATGACTTATTGGCCTACATAAAGCACCTAGATGGCGAAAGCAAGGCCGCCCTGGAGTGCTTAGGGCAAGCTGAAGATTTAAGGAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS-3UTR CAA 90 bp | CATAAGCAGCACTCCACAGCACATCTGTCTCACAGTACAGAGCTGAGAGACTGTTTCATTTCTGGGAAATaGCAACAAACACTCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: HKQHSTAHLSHSTELRDCFISGK*QQTLQG Trigger: GCCCTGGAGTGTTTGTTGCAATTTCCCAGAAATGAA...ACAGTCTCTCAGCTCTGTACTGTGAGACAGATGTGCTGTGGAGTGCTGCTTATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS TCA 90 bp | TCAGAGTTTAAATGTTCGACCTGGTTGCACACCCTGTCTTCCATATaGCTGGACATACTTCCTTCCCTGAATAAATTCCAGGTGAAATGG | + |
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Preference number: 5 (lower is better) Translates to: SEFKCSTWLHTLSSI*LDILPSLNKFQVKW Trigger: CCATTTCACCTGGAATTTATTCAGGGAAGGAAGTATGTCCAGTCATATGGAAGACAGGGTGTGCAACCAGGTCGAACATTTAAACTCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS GCA 72 bp | AATCTTCAGCTTGCCCTAAGCACTCCAGGGCGGCCTTaGTTTCGCCATCTAGGTGCTTTATGTAGGCCAATA | + |
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Preference number: 6 (lower is better) Translates to: NLQLALSTPGRP*FRHLGALCRPI Trigger: TATTGGCCTACATAAAGCACCTAGATGGCGAAAGCAAGGCCGCCCTGGAGTGCTTAGGGCAAGCTGAAGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS GCA 72 bp | TTCATTTCTGGGAAATTGCAACAAACACTCCAGGGCTaGGAGGTCTTCAGACTTCCTGTGGTACTCCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: FISGKLQQTLQG*EVFRLPVVLLE Trigger: CTCCAGGAGTACCACAGGAAGTCTGAAGACCTCGCAGCCCTGGAGTGTTTGTTGCAATTTCCCAGAAATGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS CCA 72 bp | GAACTTTCAGGTACTGGTTCTGAGGATTCAACTCCATaGCCTGCTTCAGAGCATCCACGGAGAACTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: ELSGTGSEDSTP*PASEHPRRTAS Trigger: AGAAGCAGTTCTCCGTGGATGCTCTGAAGCAGGCCATGGAGTTGAATCCTCAGAACCAGTACCTGAAAGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS TCA 72 bp | TCTGTAGCTGCTCCAGTATTTCCCTGTAACGGCACATaGCCAAAGAGTAGAGAGGACTGTTGTTCACTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SVAAPVFPCNGT*PKSREDCCSLW Trigger: CCACAGTGAACAACAGTCCTCTCTACTCTTTGGTCATGTGCCGTTACAGGGAAATACTGGAGCAGCTACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS GCA 72 bp | TTGCCTTCTCCTCAGAGTTTAAATGTTCGACCTGGTTaGACACCCTGTCTTCCATATGACTGGACATACTTC | + |
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Preference number: 6 (lower is better) Translates to: LPSPQSLNVRPG*TPCLPYDWTYF Trigger: GAAGTATGTCCAGTCATATGGAAGACAGGGTGTGCAACCAGGTCGAACATTTAAACTCTGAGGAGAAGGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS CAA 72 bp | TTCTGGGCATTCCATGCTGTAAGGATTCGCAAACTTTaGGCAAACTTGTCTCACCTTGTCAACGTAAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: FWAFHAVRIRKL*ANLSHLVNVSL Trigger: CAGGCTTACGTTGACAAGGTGAGACAAGTTTGCCAAAAGTTTGCGAATCCTTACAGCATGGAATGCCCAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS CAA 90 bp | TTTCGCCATCTAGGTGCTTTATGTAGGCCAATAAGTCATACATTGTaGCCTTCTCCTCAGAGTTTAAATGTTCGACCTGGTTGCACACCC | + |
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Preference number: 6 (lower is better) Translates to: FRHLGALCRPISHTL*PSPQSLNVRPGCTP Trigger: GGGTGTGCAACCAGGTCGAACATTTAAACTCTGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAGATGGCGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS TCA 72 bp | AAATGTTCGACCTGGTTGCACACCCTGTCTTCCATATaGCTGGACATACTTCCTTCCCTGAATAAATTCCAG | + |
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Preference number: 6 (lower is better) Translates to: KCSTWLHTLSSI*LDILPSLNKFQ Trigger: CTGGAATTTATTCAGGGAAGGAAGTATGTCCAGTCATATGGAAGACAGGGTGTGCAACCAGGTCGAACATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS CAA 90 bp | TGCTTTCGCCATCTAGGTGCTTTATGTAGGCCAATAAGTCATACATaGTTGCCTTCTCCTCAGAGTTTAAATGTTCGACCTGGTTGCACA | + |
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Preference number: 6 (lower is better) Translates to: CFRHLGALCRPISHT*LPSPQSLNVRPGCT Trigger: TGTGCAACCAGGTCGAACATTTAAACTCTGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAGATGGCGAAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS CAA 72 bp | CTAGGTGCTTTATGTAGGCCAATAAGTCATACATTGTaGCCTTCTCCTCAGAGTTTAAATGTTCGACCTGGT | + |
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Preference number: 6 (lower is better) Translates to: LGALCRPISHTL*PSPQSLNVRPG Trigger: ACCAGGTCGAACATTTAAACTCTGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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| CDS CAA 72 bp | CATCTAGGTGCTTTATGTAGGCCAATAAGTCATACATaGTTGCCTTCTCCTCAGAGTTTAAATGTTCGACCT | + |
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Preference number: 6 (lower is better) Translates to: HLGALCRPISHT*LPSPQSLNVRP Trigger: AGGTCGAACATTTAAACTCTGAGGAGAAGGCAACAATGTATGACTTATTGGCCTACATAAAGCACCTAGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102825.4 |
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