Pregenerated sensors for IFIT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045932Ensembl transcript IDs: ENSMUST00000102826.4
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCAAACTCCTGACAAATACTATAGTCAGTATGATAGCCCATTCTTaGTCCAGGAAGTGGTTAAGTATTTTGAATGGCAGCTTGGTGAGG | + |
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Preference number: 1 (lower is better) Translates to: PKLLTNTIVSMIAHS*SRKWLSILNGSLVR Trigger: CCTCACCAAGCTGCCATTCAAAATACTTAACCACTTCCTGGATCAAGAATGGGCTATCATACTGACTATAGTATTTGTCAGGAGTTTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR TCA 90 bp | TCTCAGATTCCAAGTGCTAGGATTACAGTCCTGAGCCACAGTCTCTaGCTCCTCAGCTTTTTGATGGACACTATTATCTATGAAGAAAAT | + |
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Preference number: 1 (lower is better) Translates to: SQIPSARITVLSHSL*LLSFLMDTIIYEEN Trigger: ATTTTCTTCATAGATAATAGTGTCCATCAAAAAGCTGAGGAGTCAGAGACTGTGGCTCAGGACTGTAATCCTAGCACTTGGAATCTGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR TCA 90 bp | GTGACACATTTCACATGGAATAAAACAACTCAACTCCAGTACCCATaGCATTTTCAAAGTCCCTTGACCCAAGCATCAATCCAAGTTATC | + |
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Preference number: 1 (lower is better) Translates to: VTHFTWNKTTQLQYP*HFQSPLTQASIQVI Trigger: GATAACTTGGATTGATGCTTGGGTCAAGGGACTTTGAAAATGTCATGGGTACTGGAGTTGAGTTGTTTTATTCCATGTGAAATGTGTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR TCA 90 bp | GAAGTCTGGTGTGGCTGCCTGAGTCTACTGCTTTGCACAGATGTGACCCTTCTGACTGAGGGGTGGGTGTaGTTAAAGAATTTACTACTG | + |
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Preference number: 2 (lower is better) Translates to: EVWCGCLSLLLCTDVTLLTEGWV*LKNLLL Trigger: CAGTAGTAAATTCTTTAATCACACCCACCCCTCAGT...CAGAAGGGTCACATCTGTGCAAAGCAGTAGACTCAGGCAGCCACACCAGACTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CCA 90 bp | AGACATCTTCCCATGCGACTCCTGGAAGTCTGGTGTGGCTGCCTGAGTCTACTGGTTAAGTATTTTGAATaGCAGCTTGGTGAGGGCTTT | + |
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Preference number: 2 (lower is better) Translates to: RHLPMRLLEVWCGCLSLLVKYFE*QLGEGF Trigger: AAAGCCCTCACCAAGCTGCCATTCAAAATACTTAAC...CAGTAGACTCAGGCAGCCACACCAGACTTCCAGGAGTCGCATGGGAAGATGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CCA 90 bp | GACCCAAGCATCAATCCAAGTTATCCTTCTAGGCAGCTGTCTTCCTGGCATTTCATCTATCACCTCATCTaGTCCCTCTCCCAGACCATC | + |
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Preference number: 2 (lower is better) Translates to: DPSINPSYPSRQLSSWHFIYHLI*SLSQTI Trigger: GATGGTCTGGGAGAGGGACCAGATGAGGTGATAGAT...GAAATGCCAGGAAGACAGCTGCCTAGAAGGATAACTTGGATTGATGCTTGGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR TCA 90 bp | GAAGTCTGGTGTGGCTGCCTGAGTCTACTGCTTTGCACAGATGTGACCCTTCTGGACTCCTCAGCTTTTTaGTGGACACTATTATCTATG | + |
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Preference number: 2 (lower is better) Translates to: EVWCGCLSLLLCTDVTLLDSSAF*WTLLSM Trigger: CATAGATAATAGTGTCCATCAAAAAGCTGAGGAGTC...CAGAAGGGTCACATCTGTGCAAAGCAGTAGACTCAGGCAGCCACACCAGACTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CCA 90 bp | GACCCAAGCATCAATCCAAGTTATCCTTCTAGGCAGCTGTCTTCCTGGCATTTCTCCCTTCATCCCCACTaGTGTTTCCATACTCTTGAA | + |
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Preference number: 2 (lower is better) Translates to: DPSINPSYPSRQLSSWHFSLHPH*CFHTLE Trigger: TTCAAGAGTATGGAAACACCAGTGGGGATGAAGGGA...GAAATGCCAGGAAGACAGCTGCCTAGAAGGATAACTTGGATTGATGCTTGGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR CAA 90 bp | CCCCAAACTCCTGACAAATACTATAGTCAGTATGATAGCCCATTCTaGATCCAGGAAGTGGTTAAGTATTTTGAATGGCAGCTTGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: PQTPDKYYSQYDSPF*IQEVVKYFEWQLGE Trigger: CTCACCAAGCTGCCATTCAAAATACTTAACCACTTCCTGGATCAAGAATGGGCTATCATACTGACTATAGTATTTGTCAGGAGTTTGGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR TCA 90 bp | AATGTTTATATGAATTGTCATGGTGGTAGACAGAATCTCCCTTCTTTTCCTACAAAGACAAGCCTCCACTaGGGGGTGGGTGTGATTAAA | + |
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Preference number: 2 (lower is better) Translates to: NVYMNCHGGRQNLPSFPTKTSLH*GVGVIK Trigger: TTTAATCACACCCACCCCTCAGTGGAGGCTTGTCTT...TGTAGGAAAAGAAGGGAGATTCTGTCTACCACCATGACAATTCATATAAACATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CCA 90 bp | ATATTTACACATTTAATTCTCACCTCCCACCATCCCTTCCAGACCTGGGACTCAAAAATAATTCAAGGATaGAACATTCACCCATGTGAG | + |
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Preference number: 2 (lower is better) Translates to: IFTHLILTSHHPFQTWDSKIIQG*NIHPCE Trigger: CTCACATGGGTGAATGTTCCATCCTTGAATTATTTT...TGAGTCCCAGGTCTGGAAGGGATGGTGGGAGGTGAGAATTAAATGTGTAAATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CCA 90 bp | AATGTTTATATGAATTGTCATGGTGGTAGACAGAATCTCCCTTCTTTTCCTACACATCCCTTCCAGACCTaGGACTCACTATTCAATTTA | + |
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Preference number: 2 (lower is better) Translates to: NVYMNCHGGRQNLPSFPTHPFQT*DSLFNL Trigger: TAAATTGAATAGTGAGTCCCAGGTCTGGAAGGGATG...TGTAGGAAAAGAAGGGAGATTCTGTCTACCACCATGACAATTCATATAAACATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR GCA 72 bp | CTGGAAGTCTGGTGTGGCTGCCTGAGTCTACTGCTTTaGACAGATGTGACCCTTCTGACTCACCCTGTCCTC | + |
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Preference number: 3 (lower is better) Translates to: LEVWCGCLSLLL*TDVTLLTHPVL Trigger: GAGGACAGGGTGAGTCAGAAGGGTCACATCTGTGCAAAGCAGTAGACTCAGGCAGCCACACCAGACTTCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR GCA 72 bp | CATCTTCCCATGCGACTCCTGGAAGTCTGGTGTGGCTaGCTGAGTCTACTGCTTTGCACAGATGTGACCCTT | + |
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Preference number: 3 (lower is better) Translates to: HLPMRLLEVWCG*LSLLLCTDVTL Trigger: AAGGGTCACATCTGTGCAAAGCAGTAGACTCAGGCAGCCACACCAGACTTCCAGGAGTCGCATGGGAAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR CCA 72 bp | GTAGGGAGACATCTTCCCATGCGACTCCTGGAAGTCTaGTGTGGCTGCCTGAGTCTACTGCTTTGCACAGAT | + |
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Preference number: 3 (lower is better) Translates to: VGRHLPMRLLEV*CGCLSLLLCTD Trigger: ATCTGTGCAAAGCAGTAGACTCAGGCAGCCACACCAGACTTCCAGGAGTCGCATGGGAAGATGTCTCCCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR CCA 72 bp | GGCTGTTTGCCAAGATCCTGTATCTATCACCTCATCTaGTCCCTCTCCCAGACCATCCCACGATCCAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: GCLPRSCIYHLI*SLSQTIPRSRN Trigger: GTTTCTGGATCGTGGGATGGTCTGGGAGAGGGACCAGATGAGGTGATAGATACAGGATCTTGGCAAACAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CAA 90 bp | AGACATCTTCCCATGCGACTCCTGGAAGTCTGGTGTGGCTGCCTGAGTCTACTGAATTGGAGGAATGACTaGGTCCCACAACTTTTGTTG | + |
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Preference number: 3 (lower is better) Translates to: RHLPMRLLEVWCGCLSLLNWRND*VPQLLL Trigger: CAACAAAAGTTGTGGGACCAAGTCATTCCTCCAATT...CAGTAGACTCAGGCAGCCACACCAGACTTCCAGGAGTCGCATGGGAAGATGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR TCA 72 bp | CACCCTGTCCTCAGTTTTTCGAATCCTGCTGCCACCTaGGCTAATGGAACAGTTGAACTCATGTGTGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: HPVLSFSNPAAT*ANGTVELMCVG Trigger: TCCCACACACATGAGTTCAACTGTTCCATTAGCTCAGGTGGCAGCAGGATTCGAAAAACTGAGGACAGGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR TCA 72 bp | CCCAGAGTGTGGCTGACCGTCTCATACTGGGCCACTTaGCTCTGTCAATTCACACCAACCTTAACATTTAGG | + |
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Preference number: 3 (lower is better) Translates to: PRVWLTVSYWAT*LCQFTPTLTFR Trigger: CCTAAATGTTAAGGTTGGTGTGAATTGACAGAGTCAAGTGGCCCAGTATGAGACGGTCAGCCACACTCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CAA 90 bp | AGACATCTTCCCATGCGACTCCTGGAAGTCTGGTGTGGCTGCCTGAGTCTACTGTTGGTCCCACAACTTTaGTTGTTTGTTTTTAGACCT | + |
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Preference number: 3 (lower is better) Translates to: RHLPMRLLEVWCGCLSLLLVPQL*LFVFRP Trigger: AGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAA...CAGTAGACTCAGGCAGCCACACCAGACTTCCAGGAGTCGCATGGGAAGATGTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CAA 90 bp | GACCCAAGCATCAATCCAAGTTATCCTTCTAGGCAGCTGTCTTCCTGGCATTTCATTTTGAATGGCAGCTaGGTGAGGGCTTTCTTTTTC | + |
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Preference number: 3 (lower is better) Translates to: DPSINPSYPSRQLSSWHFILNGS*VRAFFF Trigger: GAAAAAGAAAGCCCTCACCAAGCTGCCATTCAAAAT...GAAATGCCAGGAAGACAGCTGCCTAGAAGGATAACTTGGATTGATGCTTGGGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR TCA 72 bp | GAACAGTTGAACTCATGTGTGTGGGACACCATAGATTaGGAACTGGCTGGTAATTGGAGGAATGACTTGGTC | + |
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Preference number: 3 (lower is better) Translates to: EQLNSCVWDTID*ELAGNWRNDLV Trigger: GACCAAGTCATTCCTCCAATTACCAGCCAGTTCTCAATCTATGGTGTCCCACACACATGAGTTCAACTGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CAA 90 bp | ATATTTACACATTTAATTCTCACCTCCCACCATCCCTTCCAGACCTGGGACTCAAGAGCTCTAGGCTGTTaGCCAAGATCCTGTATCTAT | + |
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Preference number: 3 (lower is better) Translates to: IFTHLILTSHHPFQTWDSRALGC*PRSCIY Trigger: ATAGATACAGGATCTTGGCAAACAGCCTAGAGCTCT...TGAGTCCCAGGTCTGGAAGGGATGGTGGGAGGTGAGAATTAAATGTGTAAATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CAA 90 bp | ATATTTACACATTTAATTCTCACCTCCCACCATCCCTTCCAGACCTGGGACTCAAAGTGGTTAAGTATTTaGAATGGCAGCTTGGTGAGG | + |
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Preference number: 3 (lower is better) Translates to: IFTHLILTSHHPFQTWDSKWLSI*NGSLVR Trigger: CCTCACCAAGCTGCCATTCAAAATACTTAACCACTT...TGAGTCCCAGGTCTGGAAGGGATGGTGGGAGGTGAGAATTAAATGTGTAAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR TCA 72 bp | TTCACATGGAATAAAACAACTCAACTCCAGTACCCATaGCATTTTCAAAGTCCCTTGACCCAAGCATCAATC | + |
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Preference number: 3 (lower is better) Translates to: FTWNKTTQLQYP*HFQSPLTQASI Trigger: GATTGATGCTTGGGTCAAGGGACTTTGAAAATGTCATGGGTACTGGAGTTGAGTTGTTTTATTCCATGTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR TCA 72 bp | CTGACAAATACTATAGTCAGTATGATAGCCCATTCTTaGTCCAGGAAGTGGTTAAGTATTTTGAATGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: LTNTIVSMIAHS*SRKWLSILNGS Trigger: GCTGCCATTCAAAATACTTAACCACTTCCTGGATCAAGAATGGGCTATCATACTGACTATAGTATTTGTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR-3UTR CAA 90 bp | TCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGACTCACTATTCAATTTCTAACCCATGTGAGGAATTaGGCTGCTTTATACAAATAC | + |
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Preference number: 3 (lower is better) Translates to: SHNFCCLFLDLGLTIQFLTHVRN*AALYKY Trigger: GTATTTGTATAAAGCAGCCAAATTCCTCACATGGGT...TAGAAATTGAATAGTGAGTCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR CAA 72 bp | CCTGGAAGTCTGGTGTGGCTGCCTGAGTCTACTGCTTaGCACAGATGTGACCCTTCTGACTCACCCTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PGSLVWLPESTA*HRCDPSDSPCP Trigger: AGGACAGGGTGAGTCAGAAGGGTCACATCTGTGCAAAGCAGTAGACTCAGGCAGCCACACCAGACTTCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CCA 90 bp | AGACATCTTCCCATGCGACTCCTGGAAGTCTGGTGTGGCTGCCTGAGTCTACTGCAGGAGACAGTTGAATaGCTTGCTCCAGAGAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: RHLPMRLLEVWCGCLSLLQETVE*LAPESQ Trigger: TTGACTCTCTGGAGCAAGCCATTCAACTGTCTCCTG...CAGTAGACTCAGGCAGCCACACCAGACTTCCAGGAGTCGCATGGGAAGATGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR GCA 90 bp | AGACATCTTCCCATGCGACTCCTGGAAGTCTGGTGTGGCTGCCTGAGTCTACTGCTGTGTCATATACCTTaGAATAAAACCTGGCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: RHLPMRLLEVWCGCLSLLLCHIP*NKTWLP Trigger: GGGCAGCCAGGTTTTATTGCAAGGTATATGACACAG...CAGTAGACTCAGGCAGCCACACCAGACTTCCAGGAGTCGCATGGGAAGATGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR TCA 90 bp | GAAGTCTGGTGTGGCTGCCTGAGTCTACTGCTTTGCACAGATGTGACCCTTCTGATTCAAGCATCTCCTTaGTTTCCTCTGCTTTCCGTA | + |
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Preference number: 4 (lower is better) Translates to: EVWCGCLSLLLCTDVTLLIQASP*FPLLSV Trigger: TACGGAAAGCAGAGGAAATCAAGGAGATGCTTGAAT...CAGAAGGGTCACATCTGTGCAAAGCAGTAGACTCAGGCAGCCACACCAGACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR TCA 90 bp | AGACATCTTCCCATGCGACTCCTGGAAGTCTGGTGTGGCTGCCTGAGTCTACTGCTTAGGGCAATTCTTTaGAGTTTCTCTCTCATCTTT | + |
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Preference number: 4 (lower is better) Translates to: RHLPMRLLEVWCGCLSLLLRAIL*SFSLIF Trigger: AAAGATGAGAGAGAAACTTCAAAGAATTGCCCTAAG...CAGTAGACTCAGGCAGCCACACCAGACTTCCAGGAGTCGCATGGGAAGATGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR GCA 90 bp | GAAGTCTGGTGTGGCTGCCTGAGTCTACTGCTTTGCACAGATGTGACCCTTCTGGGCTGGAAAACTTCTTaGAGACCTGTTTCACTTTAT | + |
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Preference number: 4 (lower is better) Translates to: EVWCGCLSLLLCTDVTLLGWKTS*RPVSLY Trigger: ATAAAGTGAAACAGGTCTGCAAGAAGTTTTCCAGCC...CAGAAGGGTCACATCTGTGCAAAGCAGTAGACTCAGGCAGCCACACCAGACTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR GCA 90 bp | GACCCAAGCATCAATCCAAGTTATCCTTCTAGGCAGCTGTCTTCCTGGCATTTCCAGGAGGGAGGTCCTTaGTCAATTCTTTCTGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: DPSINPSYPSRQLSSWHFQEGGP*SILSGS Trigger: ACTTCCAGAAAGAATTGAGCAAGGACCTCCCTCCTG...GAAATGCCAGGAAGACAGCTGCCTAGAAGGATAACTTGGATTGATGCTTGGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CCA 90 bp | GACCCAAGCATCAATCCAAGTTATCCTTCTAGGCAGCTGTCTTCCTGGCATTTCTCTCGTTTTGGTTCTTaGTACACTTTAATCGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: DPSINPSYPSRQLSSWHFSRFGS*YTLIGP Trigger: GGGCCCGATTAAAGTGTACCAAGAACCAAAACGAGA...GAAATGCCAGGAAGACAGCTGCCTAGAAGGATAACTTGGATTGATGCTTGGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CCA 90 bp | GACCCAAGCATCAATCCAAGTTATCCTTCTAGGCAGCTGTCTTCCTGGCATTTCCACATAGGCGTTGTTTaGCAGCTTTTCCAAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: DPSINPSYPSRQLSSWHFHIGVV*QLFQSL Trigger: AAGGCTTTGGAAAAGCTGCCAAACAACGCCTATGTG...GAAATGCCAGGAAGACAGCTGCCTAGAAGGATAACTTGGATTGATGCTTGGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR TCA 90 bp | ATATTTACACATTTAATTCTCACCTCCCACCATCCCTTCCAGACCTGGGACTCACCTCCTCCATTCTCCTaGAGAAATGCCAAGATATGC | + |
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Preference number: 4 (lower is better) Translates to: IFTHLILTSHHPFQTWDSPPPFS*RNAKIC Trigger: GCATATCTTGGCATTTCTTCAGGAGAATGGAGGAGG...TGAGTCCCAGGTCTGGAAGGGATGGTGGGAGGTGAGAATTAAATGTGTAAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR GCA 90 bp | ATATTTACACATTTAATTCTCACCTCCCACCATCCCTTCCAGACCTGGGACTCAGCTTCCCCTAAGCATTaGAGTGCTGCCTCATTTAGA | + |
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Preference number: 4 (lower is better) Translates to: IFTHLILTSHHPFQTWDSASPKH*SAASFR Trigger: TCTAAATGAGGCAGCACTGCAATGCTTAGGGGAAGC...TGAGTCCCAGGTCTGGAAGGGATGGTGGGAGGTGAGAATTAAATGTGTAAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR GCA 90 bp | GACCCAAGCATCAATCCAAGTTATCCTTCTAGGCAGCTGTCTTCCTGGCATTTCATTCTCCTGAAGAAATaGCAAGATATGCAAGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: DPSINPSYPSRQLSSWHFILLKK*QDMQGL Trigger: GAGGCCTTGCATATCTTGGCATTTCTTCAGGAGAAT...GAAATGCCAGGAAGACAGCTGCCTAGAAGGATAACTTGGATTGATGCTTGGGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR GCA 90 bp | CAAGGATGGAACATTCACCCATGTGAGGAATTTGGCTGCTTTATACAAATACTGGCTCCAGAGAGTCAATaGAGTAATTCCTTGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: QGWNIHPCEEFGCFIQILAPESQ*SNSLLA Trigger: GGCCAGCAAGGAATTACTGCATTGACTCTCTGGAGC...CAGTATTTGTATAAAGCAGCCAAATTCCTCACATGGGTGAATGTTCCATCCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR TCA 90 bp | ATTGGAGGAATGACTTGGTCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGACAGATTGCTCTCCAGTaGCTCCTTACTCGTTGTACT | + |
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Preference number: 4 (lower is better) Translates to: IGGMTWSHNFCCLFLDLGQIALQ*LLTRCT Trigger: AGTACAACGAGTAAGGAGTCACTGGAGAGCAATCTG...TCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAAGTCATTCCTCCAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR TCA 90 bp | AATGTTTATATGAATTGTCATGGTGGTAGACAGAATCTCCCTTCTTTTCCTACAGATGCTGTTGCTGGATaGAGCCCTCAGCTTCCCCTA | + |
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Preference number: 4 (lower is better) Translates to: NVYMNCHGGRQNLPSFPTDAVAG*SPQLPL Trigger: TAGGGGAAGCTGAGGGCTTCATCCAGCAACAGCATC...TGTAGGAAAAGAAGGGAGATTCTGTCTACCACCATGACAATTCATATAAACATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR TCA 90 bp | TCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGACTCACTATTCAATTTCTATGGCCCATCCAGAGGTaGATTCTGGGTTCTTCGGGT | + |
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Preference number: 4 (lower is better) Translates to: SHNFCCLFLDLGLTIQFLWPIQR*ILGSSG Trigger: ACCCGAAGAACCCAGAATTCACCTCTGGATGGGCCA...TAGAAATTGAATAGTGAGTCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR TCA 90 bp | ATATTTACACATTTAATTCTCACCTCCCACCATCCCTTCCAGACCTGGGACTCACATATGATGGACTTTTaGCCTATAACAGCACCCCAT | + |
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Preference number: 4 (lower is better) Translates to: IFTHLILTSHHPFQTWDSHMMDF*PITAPH Trigger: ATGGGGTGCTGTTATAGGTCAAAAGTCCATCATATG...TGAGTCCCAGGTCTGGAAGGGATGGTGGGAGGTGAGAATTAAATGTGTAAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CCA 90 bp | ATTGGAGGAATGACTTGGTCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGACAATCCTGTAGGGGCTaGAAAACTTCTTGCAGACCT | + |
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Preference number: 4 (lower is better) Translates to: IGGMTWSHNFCCLFLDLGQSCRG*KTSCRP Trigger: AGGTCTGCAAGAAGTTTTCCAGCCCCTACAGGATTG...TCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAAGTCATTCCTCCAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CCA 90 bp | CAAGGATGGAACATTCACCCATGTGAGGAATTTGGCTGCTTTATACAAATACTGTCCAGAGGTGAATTCTaGGTTCTTCGGGTCCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: QGWNIHPCEEFGCFIQILSRGEF*VLRVLF Trigger: GAAAAGGACCCGAAGAACCCAGAATTCACCTCTGGA...CAGTATTTGTATAAAGCAGCCAAATTCCTCACATGGGTGAATGTTCCATCCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR TCA 90 bp | ATTGGAGGAATGACTTGGTCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGACTATCAGGTTCCAGGTaGAATGGCATTTTAGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: IGGMTWSHNFCCLFLDLGLSGSR*NGILAV Trigger: GACAGCTAAAATGCCATTTCACCTGGAACCTGATAG...TCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAAGTCATTCCTCCAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR CAA 72 bp | GCTGGTAATTGGAGGAATGACTTGGTCCCACAACTTTaGTTGTTTGTTTTTAGACCTGGGACTCACTATTCA | + |
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Preference number: 4 (lower is better) Translates to: AGNWRNDLVPQL*LFVFRPGTHYS Trigger: TGAATAGTGAGTCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAAGTCATTCCTCCAATTACCAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR GCA 90 bp | TCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGACTCACTATTCAATTTCTATTAGCTGTCGCAGATTaGTCTCCAGTGACTCCTTAC | + |
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Preference number: 4 (lower is better) Translates to: SHNFCCLFLDLGLTIQFLLAVAD*SPVTPY Trigger: GTAAGGAGTCACTGGAGAGCAATCTGCGACAGCTAA...TAGAAATTGAATAGTGAGTCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CCA 90 bp | ATATTTACACATTTAATTCTCACCTCCCACCATCCCTTCCAGACCTGGGACTCATTCACTCTCTCGTTTTaGTTCTTGGTACACTTTAAT | + |
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Preference number: 4 (lower is better) Translates to: IFTHLILTSHHPFQTWDSFTLSF*FLVHFN Trigger: ATTAAAGTGTACCAAGAACCAAAACGAGAGAGTGAA...TGAGTCCCAGGTCTGGAAGGGATGGTGGGAGGTGAGAATTAAATGTGTAAATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR CAA 72 bp | CCTGACAAATACTATAGTCAGTATGATAGCCCATTCTaGATCCAGGAAGTGGTTAAGTATTTTGAATGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PDKYYSQYDSPF*IQEVVKYFEWQ Trigger: CTGCCATTCAAAATACTTAACCACTTCCTGGATCAAGAATGGGCTATCATACTGACTATAGTATTTGTCAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR CAA 72 bp | GGTAATTGGAGGAATGACTTGGTCCCACAACTTTTGTaGTTTGTTTTTAGACCTGGGACTCACTATTCAATT | + |
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Preference number: 4 (lower is better) Translates to: GNWRNDLVPQLL*FVFRPGTHYSI Trigger: AATTGAATAGTGAGTCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAAGTCATTCCTCCAATTACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR GCA 90 bp | TCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGACTCACTATTCAATTTCTAAGAAATGCCAAGATATaGAAGGCCTCAGAATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: SHNFCCLFLDLGLTIQFLRNAKI*KASESD Trigger: GTCTGATTCTGAGGCCTTGCATATCTTGGCATTTCT...TAGAAATTGAATAGTGAGTCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| 3UTR CAA 72 bp | ATTGGAGGAATGACTTGGTCCCACAACTTTTGTTGTTaGTTTTTAGACCTGGGACTCACTATTCAATTTCTA | + |
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Preference number: 4 (lower is better) Translates to: IGGMTWSHNFCC*FLDLGLTIQFL Trigger: TAGAAATTGAATAGTGAGTCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAAGTCATTCCTCCAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CCA 90 bp | CAGTTGAATGGCTTGCTCCAGAGAGTCAATGCAGTAATTCCTTGCTaGCCAGTCATCCAGACGGTAGTTCGCAATGGCCCATCCAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: QLNGLLQRVNAVIPC*PVIQTVVRNGPSRG Trigger: ACCTCTGGATGGGCCATTGCGAACTACCGTCTGGATGACTGGCCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 90 bp | AGACAGTTGAATGGCTTGCTCCAGAGAGTCAATGCAGTAATTCCTTaGTGGCCAGTCATCCAGACGGTAGTTCGCAATGGCCCATCCAGA | + |
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Preference number: 5 (lower is better) Translates to: RQLNGLLQRVNAVIP*WPVIQTVVRNGPSR Trigger: TCTGGATGGGCCATTGCGAACTACCGTCTGGATGACTGGCCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 90 bp | AAGTGTTGTCAGGAGACAGTTGAATGGCTTGCTCCAGAGAGTCAATaGAGTAATTCCTTGCTGGCCAGTCATCCAGACGGTAGTTCGCAA | + |
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Preference number: 5 (lower is better) Translates to: KCCQETVEWLAPESQ*SNSLLASHPDGSSQ Trigger: TTGCGAACTACCGTCTGGATGACTGGCCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCTCCTGACAACACTT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CCA 90 bp | GCACTTGGGTCTTTCTTTAAGGCTTCTTCAACCAGCGCCATTGCTTaGTTTTTATGTACCGCGTCAAGCTTCAGTGCCAAGAGGACTTTA | + |
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Preference number: 5 (lower is better) Translates to: ALGSFFKASSTSAIA*FLCTASSFSAKRTL Trigger: TAAAGTCCTCTTGGCACTGAAGCTTGACGCGGTACATAAAAACCAAGCAATGGCGCTGGTTGAAGAAGCCTTAAAGAAAGACCCAAGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CAA 90 bp | GACCCAAGCATCAATCCAAGTTATCCTTCTAGGCAGCTGTCTTCCTGGCATTTCGGGCTGGAAAACTTCTaGCAGACCTGTTTCACTTTA | + |
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Preference number: 5 (lower is better) Translates to: DPSINPSYPSRQLSSWHFGLENF*QTCFTL Trigger: TAAAGTGAAACAGGTCTGCAAGAAGTTTTCCAGCCC...GAAATGCCAGGAAGACAGCTGCCTAGAAGGATAACTTGGATTGATGCTTGGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CAA 90 bp | CAAGGATGGAACATTCACCCATGTGAGGAATTTGGCTGCTTTATACAAATACTGCTGAAGGTACCTGGTTaGCAGAGTCCACTCCCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: QGWNIHPCEEFGCFIQILLKVPG*QSPLPS Trigger: AGAGGGGAGTGGACTCTGCAAACCAGGTACCTTCAG...CAGTATTTGTATAAAGCAGCCAAATTCCTCACATGGGTGAATGTTCCATCCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 90 bp | AGTCAAGAGCAGGATTCTCAATCCTGTAGGGGCTGGAAAACTTCTTaGAGACCTGTTTCACTTTATCCAGATAAGCCTGAGCCTTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: SQEQDSQSCRGWKTS*RPVSLYPDKPEPLR Trigger: TCTCAAAGGCTCAGGCTTATCTGGATAAAGTGAAACAGGTCTGCAAGAAGTTTTCCAGCCCCTACAGGATTGAGAATCCTGCTCTTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 90 bp | AACCAGCGCCATTGCTTGGTTTTTATGTACCGCGTCAAGCTTCAGTaGCAAGAGGACTTTAACATAAGTGTTGTCAGGAGACAGTTGAAT | + |
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Preference number: 5 (lower is better) Translates to: NQRHCLVFMYRVKLQ*QEDFNISVVRRQLN Trigger: ATTCAACTGTCTCCTGACAACACTTATGTTAAAGTCCTCTTGGCACTGAAGCTTGACGCGGTACATAAAAACCAAGCAATGGCGCTGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 90 bp | AGAGTCTTTATCAGCTTGCTGACCTCCTCCATTCTCCTGAAGAAATaGCAAGATATGCAAGGCCTCAGAATCAGACTCATCTTCATGAAG | + |
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Preference number: 5 (lower is better) Translates to: RVFISLLTSSILLKK*QDMQGLRIRLIFMK Trigger: CTTCATGAAGATGAGTCTGATTCTGAGGCCTTGCATATCTTGGCATTTCTTCAGGAGAATGGAGGAGGTCAGCAAGCTGATAAAGACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CAA 90 bp | CAAGGATGGAACATTCACCCATGTGAGGAATTTGGCTGCTTTATACAAATACTGAACCAGCGCCATTGCTaGGTTTTTATGTACCGCGTC | + |
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Preference number: 5 (lower is better) Translates to: QGWNIHPCEEFGCFIQILNQRHC*VFMYRV Trigger: GACGCGGTACATAAAAACCAAGCAATGGCGCTGGTT...CAGTATTTGTATAAAGCAGCCAAATTCCTCACATGGGTGAATGTTCCATCCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CAA 90 bp | ATTGGAGGAATGACTTGGTCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGAAGACAGTTGAATGGCTaGCTCCAGAGAGTCAATGCA | + |
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Preference number: 5 (lower is better) Translates to: IGGMTWSHNFCCLFLDLGRQLNG*LQRVNA Trigger: TGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCT...TCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAAGTCATTCCTCCAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CAA 90 bp | ATTGGAGGAATGACTTGGTCCCACAACTTTTGTTGTTTGTTTTTAGACCTGGGACTTCAACCAGCGCCATaGCTTGGTTTTTATGTACCG | + |
|
Preference number: 5 (lower is better) Translates to: IGGMTWSHNFCCLFLDLGLQPAP*LGFYVP Trigger: CGGTACATAAAAACCAAGCAATGGCGCTGGTTGAAG...TCCCAGGTCTAAAAACAAACAACAAAAGTTGTGGGACCAAGTCATTCCTCCAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CAA 90 bp | ATATTTACACATTTAATTCTCACCTCCCACCATCCCTTCCAGACCTGGGACTCATATTCAAGCATCTCCTaGATTTCCTCTGCTTTCCGT | + |
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Preference number: 5 (lower is better) Translates to: IFTHLILTSHHPFQTWDSYSSIS*ISSAFR Trigger: ACGGAAAGCAGAGGAAATCAAGGAGATGCTTGAATA...TGAGTCCCAGGTCTGGAAGGGATGGTGGGAGGTGAGAATTAAATGTGTAAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS-3UTR CAA 90 bp | AATGTTTATATGAATTGTCATGGTGGTAGACAGAATCTCCCTTCTTTTCCTACACAATGCAGTAATTCCTaGCTGGCCAGTCATCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: NVYMNCHGGRQNLPSFPTQCSNS*LASHPD Trigger: GTCTGGATGACTGGCCAGCAAGGAATTACTGCATTG...TGTAGGAAAAGAAGGGAGATTCTGTCTACCACCATGACAATTCATATAAACATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 72 bp | TGTTGCTGGATGAAGCCCTCAGCTTCCCCTAAGCATTaGAGTGCTGCCTCATTTAGACCTCTGCAGTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: CCWMKPSASPKH*SAASFRPLQCF Trigger: AAAGCACTGCAGAGGTCTAAATGAGGCAGCACTGCAATGCTTAGGGGAAGCTGAGGGCTTCATCCAGCAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 72 bp | AATGGCTTGCTCCAGAGAGTCAATGCAGTAATTCCTTaGTGGCCAGTCATCCAGACGGTAGTTCGCAATGGC | + |
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Preference number: 6 (lower is better) Translates to: NGLLQRVNAVIP*WPVIQTVVRNG Trigger: GCCATTGCGAACTACCGTCTGGATGACTGGCCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 72 bp | CAGGAGACAGTTGAATGGCTTGCTCCAGAGAGTCAATaGAGTAATTCCTTGCTGGCCAGTCATCCAGACGGT | + |
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Preference number: 6 (lower is better) Translates to: QETVEWLAPESQ*SNSLLASHPDG Trigger: ACCGTCTGGATGACTGGCCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCTCCTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 72 bp | CCCCTAAGCATTGCAGTGCTGCCTCATTTAGACCTCTaGAGTGCTTTACATAGGCCAGTATGTTGCACATGG | + |
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Preference number: 6 (lower is better) Translates to: PLSIAVLPHLDL*SALHRPVCCTW Trigger: CCATGTGCAACATACTGGCCTATGTAAAGCACTGCAGAGGTCTAAATGAGGCAGCACTGCAATGCTTAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CCA 72 bp | TCAGCACCTGCTTCATCCAAAGATGCTGAAGGTACCTaGTTTGCAGAGTCCACTCCCCTCTCAGAGTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: SAPASSKDAEGT*FAESTPLSESL Trigger: TAAAGACTCTGAGAGGGGAGTGGACTCTGCAAACCAGGTACCTTCAGCATCTTTGGATGAAGCAGGTGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 72 bp | TTCTGGAAACACACCTTCACTCTCTCGTTTTGGTTCTaGGTACACTTTAATCGGGCCCACCCCTCCTCACAG | + |
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Preference number: 6 (lower is better) Translates to: FWKHTFTLSFWF*VHFNRAHPSSQ Trigger: CTGTGAGGAGGGGTGGGCCCGATTAAAGTGTACCAAGAACCAAAACGAGAGAGTGAAGGTGTGTTTCCAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 90 bp | AGTATTCAGCACCTGCTTCATCCAAAGATGCTGAAGGTACCTGGTTaGCAGAGTCCACTCCCCTCTCAGAGTCTTTATCAGCTTGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: SIQHLLHPKMLKVPG*QSPLPSQSLYQLAD Trigger: GTCAGCAAGCTGATAAAGACTCTGAGAGGGGAGTGGACTCTGCAAACCAGGTACCTTCAGCATCTTTGGATGAAGCAGGTGCTGAATACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 90 bp | TACCTGGTTTGCAGAGTCCACTCCCCTCTCAGAGTCTTTATCAGCTaGCTGACCTCCTCCATTCTCCTGAAGAAATGCCAAGATATGCAA | + |
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Preference number: 6 (lower is better) Translates to: YLVCRVHSPLRVFIS*LTSSILLKKCQDMQ Trigger: TTGCATATCTTGGCATTTCTTCAGGAGAATGGAGGAGGTCAGCAAGCTGATAAAGACTCTGAGAGGGGAGTGGACTCTGCAAACCAGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 90 bp | CTATTGCACTTGGGTCTTTCTTTAAGGCTTCTTCAACCAGCGCCATaGCTTGGTTTTTATGTACCGCGTCAAGCTTCAGTGCCAAGAGGA | + |
|
Preference number: 6 (lower is better) Translates to: LLHLGLSLRLLQPAP*LGFYVPRQASVPRG Trigger: TCCTCTTGGCACTGAAGCTTGACGCGGTACATAAAAACCAAGCAATGGCGCTGGTTGAAGAAGCCTTAAAGAAAGACCCAAGTGCAATAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 90 bp | CAAGAGGACTTTAACATAAGTGTTGTCAGGAGACAGTTGAATGGCTaGCTCCAGAGAGTCAATGCAGTAATTCCTTGCTGGCCAGTCATC | + |
|
Preference number: 6 (lower is better) Translates to: QEDFNISVVRRQLNG*LQRVNAVIPCWPVI Trigger: GATGACTGGCCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCTCCTGACAACACTTATGTTAAAGTCCTCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 90 bp | CTTCAGTGCCAAGAGGACTTTAACATAAGTGTTGTCAGGAGACAGTaGAATGGCTTGCTCCAGAGAGTCAATGCAGTAATTCCTTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LQCQEDFNISVVRRQ*NGLLQRVNAVIPCW Trigger: CCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCTCCTGACAACACTTATGTTAAAGTCCTCTTGGCACTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CCA 72 bp | CACAGTCAAGAGCAGGATTCTCAATCCTGTAGGGGCTaGAAAACTTCTTGCAGACCTGTTTCACTTTATCCA | + |
|
Preference number: 6 (lower is better) Translates to: HSQEQDSQSCRG*KTSCRPVSLYP Trigger: TGGATAAAGTGAAACAGGTCTGCAAGAAGTTTTCCAGCCCCTACAGGATTGAGAATCCTGCTCTTGACTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 72 bp | TTGGGTCTTTCTTTAAGGCTTCTTCAACCAGCGCCATaGCTTGGTTTTTATGTACCGCGTCAAGCTTCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: LGLSLRLLQPAP*LGFYVPRQASV Trigger: CACTGAAGCTTGACGCGGTACATAAAAACCAAGCAATGGCGCTGGTTGAAGAAGCCTTAAAGAAAGACCCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 72 bp | TCTGTCTGTGTCATATACCTTGCAATAAAACCTGGCTaGCCTGAGGAGTGTATCTATTGCACTTGGGTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: SVCVIYLAIKPG*PEECIYCTWVF Trigger: AAAGACCCAAGTGCAATAGATACACTCCTCAGGGCAGCCAGGTTTTATTGCAAGGTATATGACACAGACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS TCA 72 bp | CTGTGTCATATACCTTGCAATAAAACCTGGCTGCCCTaGGGAGTGTATCTATTGCACTTGGGTCTTTCTTTA | + |
|
Preference number: 6 (lower is better) Translates to: LCHIPCNKTWLP*GVYLLHLGLSL Trigger: TAAAGAAAGACCCAAGTGCAATAGATACACTCCTCAGGGCAGCCAGGTTTTATTGCAAGGTATATGACACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS GCA 72 bp | CATTGCTTGGTTTTTATGTACCGCGTCAAGCTTCAGTaGCAAGAGGACTTTAACATAAGTGTTGTCAGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: HCLVFMYRVKLQ*QEDFNISVVRR Trigger: TCTCCTGACAACACTTATGTTAAAGTCCTCTTGGCACTGAAGCTTGACGCGGTACATAAAAACCAAGCAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 72 bp | TTTAACATAAGTGTTGTCAGGAGACAGTTGAATGGCTaGCTCCAGAGAGTCAATGCAGTAATTCCTTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: FNISVVRRQLNG*LQRVNAVIPCW Trigger: CCAGCAAGGAATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCTCCTGACAACACTTATGTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 72 bp | CAAGAGGACTTTAACATAAGTGTTGTCAGGAGACAGTaGAATGGCTTGCTCCAGAGAGTCAATGCAGTAATT | + |
|
Preference number: 6 (lower is better) Translates to: QEDFNISVVRRQ*NGLLQRVNAVI Trigger: AATTACTGCATTGACTCTCTGGAGCAAGCCATTCAACTGTCTCCTGACAACACTTATGTTAAAGTCCTCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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| CDS CAA 72 bp | ATACCATTTCCCTTCTGTTCAACATATGATGGACTTTaGACCTATAACAGCACCCCATATAGTAATGCACAT | + |
|
Preference number: 6 (lower is better) Translates to: IPFPFCSTYDGL*TYNSTPYSNAH Trigger: ATGTGCATTACTATATGGGGTGCTGTTATAGGTCAAAAGTCCATCATATGTTGAACAGAAGGGAAATGGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102826.4 |
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