Pregenerated sensors for IFIT1BL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067297Ensembl transcript IDs: ENSMUST00000087357.5
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTTGCTGTCAGAAGTTGCTGAAGTTTGGAAGATCCCATGAAAAATaGGCCTTAATGTGTCAAGTGTCCTTTGATCAGGGTACTGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: FCCQKLLKFGRSHEK*ALMCQVSFDQGTGR Trigger: TCTTCCAGTACCCTGATCAAAGGACACTTGACACATTAAGGCTCATTTTTCATGGGATCTTCCAAACTTCAGCAACTTCTGACAGCAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR GCA 90 bp | GGAAACGCCAGACTCCAGGAAGAGAGCTTCCTTGAAGCTCTTTGCCTCATGAGTTTCCCAGAGCTTCCTTaGTTTGTCCCTCCTAACCCT | + |
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Preference number: 2 (lower is better) Translates to: GNARLQEESFLEALCLMSFPELP*FVPPNP Trigger: AGGGTTAGGAGGGACAAAGCAAGGAAGCTCTGGGAA...ACTCATGAGGCAAAGAGCTTCAAGGAAGCTCTCTTCCTGGAGTCTGGCGTTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR GCA 90 bp | GGAAACGCCAGACTCCAGGAAGAGAGCTTCCTTGAAGCTCTTTGCCTCATGAGTTCCCTCCTAACCCTATaGAGTTTGATTTTGCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: GNARLQEESFLEALCLMSSLLTL*SLILLC Trigger: GCACAGCAAAATCAAACTGCATAGGGTTAGGAGGGA...ACTCATGAGGCAAAGAGCTTCAAGGAAGCTCTCTTCCTGGAGTCTGGCGTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR TCA 90 bp | CCTAACCCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAAGTGTCAAGTGTCCTTTaGTCAGGGTACTGGAAGACT | + |
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Preference number: 2 (lower is better) Translates to: PNPMQFDFAVLWFHPIIEVSSVL*SGYWKT Trigger: AGTCTTCCAGTACCCTGATCAAAGGACACTTGACAC...TTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGGGTTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR TCA 90 bp | ATATTCCCAGAGCTTCCTTGCTTTGTCCCTCCTAACCCTATGCAGTTTGATTTTGCTGTCAGAAGTTGCTaGAGTTTGGAAGATCCCATG | + |
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Preference number: 2 (lower is better) Translates to: IFPELPCFVPPNPMQFDFAVRSC*SLEDPM Trigger: CATGGGATCTTCCAAACTTCAGCAACTTCTGACAGC...AAAATCAAACTGCATAGGGTTAGGAGGGACAAAGCAAGGAAGCTCTGGGAATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR GCA 90 bp | GGAAACGCCAGACTCCAGGAAGAGAGCTTCCTTGAAGCTCTTTGCCTCATGAGTATTGCTCATTTATTTTaGTGTCAGAAGTTGCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: GNARLQEESFLEALCLMSIAHLF*CQKLLK Trigger: CTTCAGCAACTTCTGACAGCAAAATAAATGAGCAAT...ACTCATGAGGCAAAGAGCTTCAAGGAAGCTCTCTTCCTGGAGTCTGGCGTTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR CAA 90 bp | CACCACAATTATCTGAAATCAACCACTTGTATACAAAAAGATGCATaGATTATTAGGGTGGAGGTCATTGACCAGCAGGTTCTGGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: HHNYLKSTTCIQKDA*IIRVEVIDQQVLAA Trigger: TGCAGCCAGAACCTGCTGGTCAATGACCTCCACCCTAATAATCAATGCATCTTTTTGTATACAAGTGGTTGATTTCAGATAATTGTGGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR TCA 90 bp | ATATTCCCAGAGCTTCCTTGCTTTGTCCCTCCTAACCCTATGCAGTTTGATTTTGTTTGGAAGATCCCATaGAAAATGAGCCTTAATGTG | + |
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Preference number: 2 (lower is better) Translates to: IFPELPCFVPPNPMQFDFVWKIP*KMSLNV Trigger: CACATTAAGGCTCATTTTTCATGGGATCTTCCAAAC...AAAATCAAACTGCATAGGGTTAGGAGGGACAAAGCAAGGAAGCTCTGGGAATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR TCA 90 bp | CCTAACCCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAAAATGGGCCTATGGACTaGAACACTGTAAAGATATCT | + |
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Preference number: 2 (lower is better) Translates to: PNPMQFDFAVLWFHPIIENGPMD*NTVKIS Trigger: AGATATCTTTACAGTGTTTCAGTCCATAGGCCCATT...TTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGGGTTAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR CCA 90 bp | CACAGAAATCCACCACAATTATCTGAAATCAACCACTTGTATACAAAAAGATGCTGTGTGGCAGGAGAATaGACACGCTTGTCACACACT | + |
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Preference number: 2 (lower is better) Translates to: HRNPPQLSEINHLYTKRCCVAGE*TRLSHT Trigger: AGTGTGTGACAAGCGTGTCCATTCTCCTGCCACACA...GCATCTTTTTGTATACAAGTGGTTGATTTCAGATAATTGTGGTGGATTTCTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR TCA 90 bp | GGGTGTAACTTCGCTATAGTTCTAAGTATCTATTCTGGTTTCTCCTTTGGTCTGAGATCCCATGAAAAATaGGCCTTAATGTGTCAAGTG | + |
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Preference number: 2 (lower is better) Translates to: GCNFAIVLSIYSGFSFGLRSHEK*ALMCQV Trigger: CACTTGACACATTAAGGCTCATTTTTCATGGGATCT...CAGACCAAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGAAGTTACACCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR GCA 90 bp | GGGTGTAACTTCGCTATAGTTCTAAGTATCTATTCTGGTTTCTCCTTTGGTCTGAGTTTGATTTTGCTGTaGTCTGGTTCCATCCAATCA | + |
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Preference number: 2 (lower is better) Translates to: GCNFAIVLSIYSGFSFGLSLILL*SGSIQS Trigger: TGATTGGATGGAACCAGAGCACAGCAAAATCAAACT...CAGACCAAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGAAGTTACACCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR GCA 90 bp | CACAGAAATCCACCACAATTATCTGAAATCAACCACTTGTATACAAAAAGATGCCCAGCAGGTTCTGGCTaGAGTAAAGCCTATGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: HRNPPQLSEINHLYTKRCPAGSG*SKAYEN Trigger: ATTTTCATAGGCTTTACTGCAGCCAGAACCTGCTGG...GCATCTTTTTGTATACAAGTGGTTGATTTCAGATAATTGTGGTGGATTTCTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR TCA 90 bp | CACAGAAATCCACCACAATTATCTGAAATCAACCACTTGTATACAAAAAGATGCAGGGTACTGGAAGACTaGTGTTATAGGAGATGCAAT | + |
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Preference number: 2 (lower is better) Translates to: HRNPPQLSEINHLYTKRCRVLED*CYRRCN Trigger: ATTGCATCTCCTATAACATCAGTCTTCCAGTACCCT...GCATCTTTTTGTATACAAGTGGTTGATTTCAGATAATTGTGGTGGATTTCTGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR GCA 72 bp | TCCCAGAGCTTCCTTGCTTTGTCCCTCCTAACCCTATaGAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAA | + |
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Preference number: 3 (lower is better) Translates to: SQSFLALSLLTL*SLILLCSGSIQ Trigger: TTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGGGTTAGGAGGGACAAAGCAAGGAAGCTCTGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR CAA 90 bp | GGGTGTAACTTCGCTATAGTTCTAAGTATCTATTCTGGTTTCTCCTTTGGTCTGTTAGGGTGGAGGTCATaGACCAGCAGGTTCTGGCTG | + |
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Preference number: 3 (lower is better) Translates to: GCNFAIVLSIYSGFSFGLLGWRS*TSRFWL Trigger: CAGCCAGAACCTGCTGGTCAATGACCTCCACCCTAA...CAGACCAAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGAAGTTACACCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR CCA 72 bp | CAAAGGCACACTCATAAGGAAAATGTCCAGCATGTGTaGCAGGAGAATGGACACGCTTGTCACACACTCATA | + |
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Preference number: 3 (lower is better) Translates to: QRHTHKENVQHV*QENGHACHTLI Trigger: TATGAGTGTGTGACAAGCGTGTCCATTCTCCTGCCACACATGCTGGACATTTTCCTTATGAGTGTGCCTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR TCA 72 bp | TGTGTCAAGTGTCCTTTGATCAGGGTACTGGAAGACTaGTGTTATAGGAGATGCAATCCAAAGGCACACTCA | + |
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Preference number: 3 (lower is better) Translates to: CVKCPLIRVLED*CYRRCNPKAHS Trigger: TGAGTGTGCCTTTGGATTGCATCTCCTATAACATCAGTCTTCCAGTACCCTGATCAAAGGACACTTGACACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR TCA 72 bp | CAGAAGTTGCTGAAGTTTGGAAGATCCCATGAAAAATaGGCCTTAATGTGTCAAGTGTCCTTTGATCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: QKLLKFGRSHEK*ALMCQVSFDQG Trigger: ACCCTGATCAAAGGACACTTGACACATTAAGGCTCATTTTTCATGGGATCTTCCAAACTTCAGCAACTTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| 3UTR-3UTR CAA 90 bp | GTGTATGGGTGTAACTTCGCTATAGTTCTAAGTATCTATTCTGGTTTCTCCTTTCTATGCAGTTTGATTTaGCTGTGCTCTGGTTCCATC | + |
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Preference number: 3 (lower is better) Translates to: VYGCNFAIVLSIYSGFSFLCSLI*LCSGSI Trigger: GATGGAACCAGAGCACAGCAAAATCAAACTGCATAG...AAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGAAGTTACACCCATACAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR GCA 90 bp | CTCATAAGGAAAATGTCCAGCATGTGTGGCAGGAGAATGGACACGCTTGTCACATGTCCCCTCTCAGTCTaGAGACGAGCCCAAGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: LIRKMSSMCGRRMDTLVTCPLSV*RRAQGG Trigger: GCCTCCTTGGGCTCGTCTGCAGACTGAGAGGGGACA...TGTGACAAGCGTGTCCATTCTCCTGCCACACATGCTGGACATTTTCCTTATGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR TCA 90 bp | CTCATAAGGAAAATGTCCAGCATGTGTGGCAGGAGAATGGACACGCTTGTCACAGGTTCACTGCTCCTGTaGGCCTCAGGGCCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LIRKMSSMCGRRMDTLVTGSLLL*ASGPSH Trigger: ATGAGAAGGCCCTGAGGCTCACAGGAGCAGTGAACC...TGTGACAAGCGTGTCCATTCTCCTGCCACACATGCTGGACATTTTCCTTATGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR GCA 90 bp | GTTATAGGAGATGCAATCCAAAGGCACACTCATAAGGAAAATGTCCAGCATGTGAAACTCAGGGTTCACTaGTCCTGTGAGCCTCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: VIGDAIQRHTHKENVQHVKLRVH*SCEPQG Trigger: GCCCTGAGGCTCACAGGAGCAGTGAACCCTGAGTTT...CACATGCTGGACATTTTCCTTATGAGTGTGCCTTTGGATTGCATCTCCTATAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CCA 90 bp | CCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAATACAGAAGCTCCCAGGTAAAGTaGCATCTCAGCTCATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: PMQFDFAVLWFHPIIEYRSSQVK*HLSSSR Trigger: CCTGGATGAGCTGAGATGCCACTTTACCTGGGAGCT...TCTGTATTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR GCA 90 bp | GTTATAGGAGATGCAATCCAAAGGCACACTCATAAGGAAAATGTCCAGCATGTGGTGATAGGCTACATCTaGATAGCCAGCGTTGTACTC | + |
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Preference number: 4 (lower is better) Translates to: VIGDAIQRHTHKENVQHVVIGYI*IASVVL Trigger: GAGTACAACGCTGGCTATGCAGATGTAGCCTATCAC...CACATGCTGGACATTTTCCTTATGAGTGTGCCTTTGGATTGCATCTCCTATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR GCA 90 bp | GGAAACGCCAGACTCCAGGAAGAGAGCTTCCTTGAAGCTCTTTGCCTCATGAGTCTGAAAATTGTCCTCTaGCTCTTTTTGTTGATGATT | + |
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Preference number: 4 (lower is better) Translates to: GNARLQEESFLEALCLMSLKIVL*LFLLMI Trigger: AATCATCAACAAAAAGAGGCAGAGGACAATTTTCAG...ACTCATGAGGCAAAGAGCTTCAAGGAAGCTCTCTTCCTGGAGTCTGGCGTTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CCA 90 bp | ATATTCCCAGAGCTTCCTTGCTTTGTCCCTCCTAACCCTATGCAGTTTGATTTTCTTCACTCATGTTGCTaGGACTCAGAAGTTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: IFPELPCFVPPNPMQFDFLHSCC*DSEVAP Trigger: TGGAGCAACTTCTGAGTCCCAGCAACATGAGTGAAG...AAAATCAAACTGCATAGGGTTAGGAGGGACAAAGCAAGGAAGCTCTGGGAATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR TCA 90 bp | GTTATAGGAGATGCAATCCAAAGGCACACTCATAAGGAAAATGTCCAGCATGTGGTTCCTCCAAAGCCTTaGGAAGTTTATCCCTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: VIGDAIQRHTHKENVQHVVPPKP*EVYPCS Trigger: ACTACAGGGATAAACTTCTCAAGGCTTTGGAGGAAC...CACATGCTGGACATTTTCCTTATGAGTGTGCCTTTGGATTGCATCTCCTATAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR TCA 90 bp | CCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAATACAGAATGCTCAACACTTCCTaGAAATTGTCCTCTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: PMQFDFAVLWFHPIIEYRMLNTS*KLSSAS Trigger: AGAGGCAGAGGACAATTTTCAGGAAGTGTTGAGCAT...TCTGTATTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR TCA 90 bp | GTGTATGGGTGTAACTTCGCTATAGTTCTAAGTATCTATTCTGGTTTCTCCTTTAAGCTTTCCAGGACATaGTCCTCCTTGCGTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: VYGCNFAIVLSIYSGFSFKLSRT*SSLRPS Trigger: TGAAGGACGCAAGGAGGATCATGTCCTGGAAAGCTT...AAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGAAGTTACACCCATACAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CCA 90 bp | GTGTATGGGTGTAACTTCGCTATAGTTCTAAGTATCTATTCTGGTTTCTCCTTTGTACTCAGGGTTTTCTaGCTCCACTTTCAGAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: VYGCNFAIVLSIYSGFSFVLRVF*LHFQSP Trigger: AGGGCTCTGAAAGTGGAGCCAGAAAACCCTGAGTAC...AAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGAAGTTACACCCATACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CCA 90 bp | CCTAACCCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAAAAGGTATGGATCTTCTaGTTTTACACTGACAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: PNPMQFDFAVLWFHPIIEKVWIF*FYTDSL Trigger: AAGGCTGTCAGTGTAAAACCAGAAGATCCATACCTT...TTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGGGTTAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CCA 90 bp | GTTATAGGAGATGCAATCCAAAGGCACACTCATAAGGAAAATGTCCAGCATGTGGCCAAATGGCATGATTaGTCTGCTCTTTTTCTATTC | + |
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Preference number: 4 (lower is better) Translates to: VIGDAIQRHTHKENVQHVAKWHD*SALFLF Trigger: GAATAGAAAAAGAGCAGACCAATCATGCCATTTGGC...CACATGCTGGACATTTTCCTTATGAGTGTGCCTTTGGATTGCATCTCCTATAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR GCA 90 bp | GGGTGTAACTTCGCTATAGTTCTAAGTATCTATTCTGGTTTCTCCTTTGGTCTGGTTTTTCTTAAATCCTaGAGCTTTAGGGCAAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: GCNFAIVLSIYSGFSFGLVFLKS*SFRARR Trigger: TCTCCTTGCCCTAAAGCTGCAGGATTTAAGAAAAAC...CAGACCAAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGAAGTTACACCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CCA 90 bp | CCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAATACAGATTTCAAAGCAGGCCATaGCTCGTGTATAATTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: PMQFDFAVLWFHPIIEYRFQSRP*LVYNFV Trigger: CACAAAATTATACACGAGCCATGGCCTGCTTTGAAA...TCTGTATTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CCA 90 bp | CCTAACCCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAAGAGAACTTTAAGGTATaGATCTTCTGGTTTTACACT | + |
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Preference number: 4 (lower is better) Translates to: PNPMQFDFAVLWFHPIIEENFKV*IFWFYT Trigger: AGTGTAAAACCAGAAGATCCATACCTTAAAGTTCTC...TTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGGGTTAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CCA 90 bp | CACAGAAATCCACCACAATTATCTGAAATCAACCACTTGTATACAAAAAGATGCATGCTCTGTCATATGTaGGTTTCAGCTCTAAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: HRNPPQLSEINHLYTKRCMLCHM*VSALKS Trigger: AGACTTTAGAGCTGAAACCCACATATGACAGAGCAT...GCATCTTTTTGTATACAAGTGGTTGATTTCAGATAATTGTGGTGGATTTCTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR TCA 90 bp | CACAGAAATCCACCACAATTATCTGAAATCAACCACTTGTATACAAAAAGATGCCAGTCTCTGAGATTTTaGTTTCTAAGTCATGGATGT | + |
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Preference number: 4 (lower is better) Translates to: HRNPPQLSEINHLYTKRCQSLRF*FLSHGC Trigger: ACATCCATGACTTAGAAATCAAAATCTCAGAGACTG...GCATCTTTTTGTATACAAGTGGTTGATTTCAGATAATTGTGGTGGATTTCTGTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR GCA 90 bp | GTGTATGGGTGTAACTTCGCTATAGTTCTAAGTATCTATTCTGGTTTCTCCTTTAGCCAAATCAATATATaGTCTGTCATATGTGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: VYGCNFAIVLSIYSGFSFSQINI*SVICGF Trigger: AAACCCACATATGACAGAGCATATATTGATTTGGCT...AAAGGAGAAACCAGAATAGATACTTAGAACTATAGCGAAGTTACACCCATACAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS TCA 90 bp | CTCAGTCTGCAGACGAGCCCAAGGAGGCTCAAGCTTTCCAGGACATaGTCCTCCTTGCGTCCTTCAGCCAGTTCCTCCAAAGCCTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: LSLQTSPRRLKLSRT*SSLRPSASSSKALR Trigger: TCTCAAGGCTTTGGAGGAACTGGCTGAAGGACGCAAGGAGGATCATGTCCTGGAAAGCTTGAGCCTCCTTGGGCTCGTCTGCAGACTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS GCA 90 bp | CCTTCTCATAACATGACATGGCTTCACTTGTGTCCCCTCTCAGTCTaGAGACGAGCCCAAGGAGGCTCAAGCTTTCCAGGACATGATCCT | + |
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Preference number: 5 (lower is better) Translates to: PSHNMTWLHLCPLSV*RRAQGGSSFPGHDP Trigger: AGGATCATGTCCTGGAAAGCTTGAGCCTCCTTGGGCTCGTCTGCAGACTGAGAGGGGACACAAGTGAAGCCATGTCATGTTATGAGAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CAA 90 bp | GTTATAGGAGATGCAATCCAAAGGCACACTCATAAGGAAAATGTCCAGCATGTGATGACATGGCTTCACTaGTGTCCCCTCTCAGTCTGC | + |
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Preference number: 5 (lower is better) Translates to: VIGDAIQRHTHKENVQHVMTWLH*CPLSVC Trigger: GCAGACTGAGAGGGGACACAAGTGAAGCCATGTCAT...CACATGCTGGACATTTTCCTTATGAGTGTGCCTTTGGATTGCATCTCCTATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CAA 90 bp | ATATTCCCAGAGCTTCCTTGCTTTGTCCCTCCTAACCCTATGCAGTTTGATTTTGATTCTTCACTCATGTaGCTGGGACTCAGAAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: IFPELPCFVPPNPMQFDFDSSLM*LGLRSC Trigger: GCAACTTCTGAGTCCCAGCAACATGAGTGAAGAATC...AAAATCAAACTGCATAGGGTTAGGAGGGACAAAGCAAGGAAGCTCTGGGAATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CAA 90 bp | GTTATAGGAGATGCAATCCAAAGGCACACTCATAAGGAAAATGTCCAGCATGTGGGACTTGAAAATTCCTaGCACACCTTCTCCACCTTG | + |
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Preference number: 5 (lower is better) Translates to: VIGDAIQRHTHKENVQHVGLENS*HTFSTL Trigger: CAAGGTGGAGAAGGTGTGCAAGGAATTTTCAAGTCC...CACATGCTGGACATTTTCCTTATGAGTGTGCCTTTGGATTGCATCTCCTATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CAA 90 bp | CTCATAAGGAAAATGTCCAGCATGTGTGGCAGGAGAATGGACACGCTTGTCACATCAGTCTCTGAGATTTaGATTTCTAAGTCATGGATG | + |
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Preference number: 5 (lower is better) Translates to: LIRKMSSMCGRRMDTLVTSVSEI*ISKSWM Trigger: CATCCATGACTTAGAAATCAAAATCTCAGAGACTGA...TGTGACAAGCGTGTCCATTCTCCTGCCACACATGCTGGACATTTTCCTTATGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CAA 90 bp | CTCATAAGGAAAATGTCCAGCATGTGTGGCAGGAGAATGGACACGCTTGTCACATTTGTTGATGATTTTTaGCGTACACCTCAGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: LIRKMSSMCGRRMDTLVTFVDDF*RTPQPN Trigger: ATTTGGCTGAGGTGTACGCAAAAAATCATCAACAAA...TGTGACAAGCGTGTCCATTCTCCTGCCACACATGCTGGACATTTTCCTTATGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CAA 90 bp | CCTAACCCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAACCGGAAATGAATTTCTaGCTGCATATAATCTCCCAA | + |
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Preference number: 5 (lower is better) Translates to: PNPMQFDFAVLWFHPIIEPEMNF*LHIISQ Trigger: TTGGGAGATTATATGCAGCAAGAAATTCATTTCCGG...TTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGGGTTAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CAA 90 bp | CACAGAAATCCACCACAATTATCTGAAATCAACCACTTGTATACAAAAAGATGCTGTAGCGGAAGGGACTaGAAAATTCCTTGCACACCT | + |
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Preference number: 5 (lower is better) Translates to: HRNPPQLSEINHLYTKRCCSGRD*KIPCTP Trigger: AGGTGTGCAAGGAATTTTCAAGTCCCTTCCGCTACA...GCATCTTTTTGTATACAAGTGGTTGATTTCAGATAATTGTGGTGGATTTCTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS-3UTR CAA 90 bp | CCTATGCAGTTTGATTTTGCTGTGCTCTGGTTCCATCCAATCATAGAATACAGAACATATCCAAAGATATaGTTCTGGGAGGATATTGTG | + |
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Preference number: 5 (lower is better) Translates to: PMQFDFAVLWFHPIIEYRTYPKI*FWEDIV Trigger: CACAATATCCTCCCAGAACAATATCTTTGGATATGT...TCTGTATTCTATGATTGGATGGAACCAGAGCACAGCAAAATCAAACTGCATAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS TCA 72 bp | CAGACGAGCCCAAGGAGGCTCAAGCTTTCCAGGACATaGTCCTCCTTGCGTCCTTCAGCCAGTTCCTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: QTSPRRLKLSRT*SSLRPSASSSK Trigger: TTTGGAGGAACTGGCTGAAGGACGCAAGGAGGATCATGTCCTGGAAAGCTTGAGCCTCCTTGGGCTCGTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS TCA 72 bp | CACTGCTCCTGTGAGCCTCAGGGCCTTCTCATAACATaGCATGGCTTCACTTGTGTCCCCTCTCAGTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: HCSCEPQGLLIT*HGFTCVPSQSA Trigger: TGCAGACTGAGAGGGGACACAAGTGAAGCCATGTCATGTTATGAGAAGGCCCTGAGGCTCACAGGAGCAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS GCA 72 bp | AACATGACATGGCTTCACTTGTGTCCCCTCTCAGTCTaGAGACGAGCCCAAGGAGGCTCAAGCTTTCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: NMTWLHLCPLSV*RRAQGGSSFPG Trigger: TCCTGGAAAGCTTGAGCCTCCTTGGGCTCGTCTGCAGACTGAGAGGGGACACAAGTGAAGCCATGTCATGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS TCA 72 bp | CCTCCTTGCGTCCTTCAGCCAGTTCCTCCAAAGCCTTaGGAAGTTTATCCCTGTAGTGAGAAGTTACCTCTA | + |
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Preference number: 6 (lower is better) Translates to: PPCVLQPVPPKP*EVYPCSEKLPL Trigger: TAGAGGTAACTTCTCACTACAGGGATAAACTTCTCAAGGCTTTGGAGGAACTGGCTGAAGGACGCAAGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS CCA 72 bp | CGGAACTCAGTCTCTGAGATTTTGATTTCTAAGTCATaGATGTGCTTATCTTTTATGTCCAGCTCCCAGGTA | + |
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Preference number: 6 (lower is better) Translates to: RNSVSEILISKS*MCLSFMSSSQV Trigger: TACCTGGGAGCTGGACATAAAAGATAAGCACATCCATGACTTAGAAATCAAAATCTCAGAGACTGAGTTCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS GCA 72 bp | TCAGTCTCTGAGATTTTGATTTCTAAGTCATGGATGTaGTTATCTTTTATGTCCAGCTCCCAGGTAAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: SVSEILISKSWM*LSFMSSSQVKW Trigger: CCACTTTACCTGGGAGCTGGACATAAAAGATAAGCACATCCATGACTTAGAAATCAAAATCTCAGAGACTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS GCA 72 bp | GAATTTCTTGCTGCATATAATCTCCCAAGTTACTCATaGTCAACACTTCCTGAAAATTGTCCTCTGCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: EFLAAYNLPSYS*STLPENCPLPL Trigger: AAGAGGCAGAGGACAATTTTCAGGAAGTGTTGAGCATGAGTAACTTGGGAGATTATATGCAGCAAGAAATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS GCA 72 bp | CTGCCTCTTCTGATTTCTTATAGTATTGTTGGAAGTTaGCATACCGGAAATGAATTTCTTGCTGCATATAAT | + |
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Preference number: 6 (lower is better) Translates to: LPLLISYSIVGS*HTGNEFLAAYN Trigger: ATTATATGCAGCAAGAAATTCATTTCCGGTATGGCAACTTCCAACAATACTATAAGAAATCAGAAGAGGCAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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| CDS TCA 72 bp | AAGTTACCTCTATTTTCAGGCCTTTTAAGTAATGTGTaGTGGCTGCCTCTTCTGATTTCTTATAGTATTGTT | + |
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Preference number: 6 (lower is better) Translates to: KLPLFSGLLSNV*WLPLLISYSIV Trigger: AACAATACTATAAGAAATCAGAAGAGGCAGCCATCACACATTACTTAAAAGGCCTGAAAATAGAGGTAACTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087357.5 |
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