Pregenerated sensors for IFIT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034459Ensembl transcript IDs: ENSMUST00000102824.4
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAGATATCTGTTCCAAAGGCACAGACATAAGGAAAAAGGTTGTGTaGTTCTACAGCTCACAGGAGTCCAAAACAGCAGGAATCAGTTGT | + |
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Preference number: 1 (lower is better) Translates to: EDICSKGTDIRKKVV*FYSSQESKTAGISC Trigger: ACAACTGATTCCTGCTGTTTTGGACTCCTGTGAGCTGTAGAATCACACAACCTTTTTCCTTATGTCTGTGCCTTTGGAACAGATATCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR-3UTR TCA 90 bp | AGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAAGCAGCTCTTTTCAGATGTAGGAAAAAGGTTGTGTaGTTCTACAGCTCACAGGAG | + |
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Preference number: 2 (lower is better) Translates to: SATICLQASVVQAALFRCRKKVV*FYSSQE Trigger: CTCCTGTGAGCTGTAGAATCACACAACCTTTTTCCT...ACATCTGAAAAGAGCTGCTTGCACCACACTAGCTTGCAGGCATATTGTGGCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR-3UTR CCA 90 bp | TCCAGGACATTAGCAAAGGGTGGAAGATATCTGTTCCAAAGGCACAGACATAAGTATGTATCCTTGGGATaGAATTGCCTGCTAGACAGG | + |
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Preference number: 2 (lower is better) Translates to: SRTLAKGGRYLFQRHRHKYVSLG*NCLLDR Trigger: CCTGTCTAGCAGGCAATTCCATCCCAAGGATACATA...CTTATGTCTGTGCCTTTGGAACAGATATCTTCCACCCTTTGCTAATGTCCTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR-3UTR CCA 90 bp | GTAATTCTGCTTGCTGGTTCATTCATTGGCACATGCACAGCAAGATTTCATATAGCCTGCAAGCTAGTGTaGTGCAAGCAGCTCTTTTCA | + |
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Preference number: 2 (lower is better) Translates to: VILLAGSFIGTCTARFHIACKLV*CKQLFS Trigger: TGAAAAGAGCTGCTTGCACCACACTAGCTTGCAGGC...TATATGAAATCTTGCTGTGCATGTGCCAATGAATGAACCAGCAAGCAGAATTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR-3UTR GCA 90 bp | TCAGGAATCCAGGATAAAAGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAAGGAGAAAATGTACCTTaGTACTTGGCATTTCAGAAA | + |
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Preference number: 2 (lower is better) Translates to: SGIQDKSATICLQASVVQGENVP*YLAFQK Trigger: TTTCTGAAATGCCAAGTAGCAAGGTACATTTTCTCC...TTGCACCACACTAGCTTGCAGGCATATTGTGGCACTTTTATCCTGGATTCCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR TCA 72 bp | CAAGACTACCTGCGTAGGGATGGAAGCACTCACAGTTaGCTGTGTCATACGACAACAGTCAGGAATCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: QDYLRRDGSTHS*LCHTTTVRNPG Trigger: TCCTGGATTCCTGACTGTTGTCGTATGACACAGTCAACTGTGAGTGCTTCCATCCCTACGCAGGTAGTCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR GCA 72 bp | CAACAGTCAGGAATCCAGGATAAAAGTGCCACAATATaGCTGCAAGCTAGTGTGGTGCAAGCAGCTCTTTTC | + |
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Preference number: 3 (lower is better) Translates to: QQSGIQDKSATI*LQASVVQAALF Trigger: GAAAAGAGCTGCTTGCACCACACTAGCTTGCAGGCATATTGTGGCACTTTTATCCTGGATTCCTGACTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR CCA 72 bp | AGGATAAAAGTGCCACAATATGCCTGCAAGCTAGTGTaGTGCAAGCAGCTCTTTTCAGATGTCCCAGGATAT | + |
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Preference number: 3 (lower is better) Translates to: RIKVPQYACKLV*CKQLFSDVPGY Trigger: ATATCCTGGGACATCTGAAAAGAGCTGCTTGCACCACACTAGCTTGCAGGCATATTGTGGCACTTTTATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR-3UTR CAA 90 bp | GTAATTCTGCTTGCTGGTTCATTCATTGGCACATGCACAGCAAGATTTCATATAATCCTTGGGATGGAATaGCCTGCTAGACAGGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: VILLAGSFIGTCTARFHIILGME*PARQGQ Trigger: CTGACCCTGTCTAGCAGGCAATTCCATCCCAAGGAT...TATATGAAATCTTGCTGTGCATGTGCCAATGAATGAACCAGCAAGCAGAATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR-3UTR CAA 90 bp | AGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAAGCAGCTCTTTTCAGATGTTTGGCAAAGACTTTTTaGTCCAGGACATTAGCAAAG | + |
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Preference number: 3 (lower is better) Translates to: SATICLQASVVQAALFRCLAKTF*SRTLAK Trigger: CTTTGCTAATGTCCTGGACAAAAAAGTCTTTGCCAA...ACATCTGAAAAGAGCTGCTTGCACCACACTAGCTTGCAGGCATATTGTGGCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR TCA 72 bp | TGTTCCAAAGGCACAGACATAAGGAAAAAGGTTGTGTaGTTCTACAGCTCACAGGAGTCCAAAACAGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: CSKGTDIRKKVV*FYSSQESKTAG Trigger: TCCTGCTGTTTTGGACTCCTGTGAGCTGTAGAATCACACAACCTTTTTCCTTATGTCTGTGCCTTTGGAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR GCA 72 bp | ATAAAAGTGCCACAATATGCCTGCAAGCTAGTGTGGTaGAAGCAGCTCTTTTCAGATGTCCCAGGATATATC | + |
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Preference number: 3 (lower is better) Translates to: IKVPQYACKLVW*KQLFSDVPGYI Trigger: GATATATCCTGGGACATCTGAAAAGAGCTGCTTGCACCACACTAGCTTGCAGGCATATTGTGGCACTTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR-3UTR CAA 90 bp | TCCAGGACATTAGCAAAGGGTGGAAGATATCTGTTCCAAAGGCACAGACATAAGAGGAGAAAATGTACCTaGCTACTTGGCATTTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: SRTLAKGGRYLFQRHRHKRRKCT*LLGISE Trigger: TTCTGAAATGCCAAGTAGCAAGGTACATTTTCTCCT...CTTATGTCTGTGCCTTTGGAACAGATATCTTCCACCCTTTGCTAATGTCCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR TCA 72 bp | AGTCCAAAACAGCAGGAATCAGTTGTGATCTTTAAGTaGGTATGTATCCTTGGGATGGAATTGCCTGCTAGA | + |
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Preference number: 3 (lower is better) Translates to: SPKQQESVVIFK*VCILGMELPAR Trigger: TCTAGCAGGCAATTCCATCCCAAGGATACATACTCACTTAAAGATCACAACTGATTCCTGCTGTTTTGGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | TCAGGAATCCAGGATAAAAGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAAGCAGCCAGGCACAGTTaGCCCAGGTCGCCAGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: SGIQDKSATICLQASVVQAARHS*PRSPGF Trigger: GAAGCCTGGCGACCTGGGGCAACTGTGCCTGGCTGC...TTGCACCACACTAGCTTGCAGGCATATTGTGGCACTTTTATCCTGGATTCCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | TTTGACTTACACTTAGAGATCATAATCCATCAGGGAGGAAACTCAGGGCAGAAATCGCCAGGCTTCTCTTaGTCAGCTGCTCGCTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: FDLHLEIIIHQGGNSGQKSPGFS*SAARSG Trigger: TCCAGAGCGAGCAGCTGAGCAAGAGAAGCCTGGCGA...TTTCTGCCCTGAGTTTCCTCCCTGATGGATTATGATCTCTAAGTGTAAGTCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | TGGGAAAAGAAATCAGGAAGGAGCATTGGAACACTTGGTTGTGAGTATATTAACGGGCTTCTGCCAAGCTaGCCCTGTGGTAATGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: WEKKSGRSIGTLGCEYINGLLPS*PCGNAA Trigger: GGCTGCATTACCACAGGGGCAGCTTGGCAGAAGCCC...GTTAATATACTCACAACCAAGTGTTCCAATGCTCCTTCCTGATTTCTTTTCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | TCCAGGACATTAGCAAAGGGTGGAAGATATCTGTTCCAAAGGCACAGACATAAGTCTTGCACATTGTCCTaGCTTCTGGGCTGCCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: SRTLAKGGRYLFQRHRHKSCTLS*LLGCLF Trigger: AAACAGGCAGCCCAGAAGGCAGGACAATGTGCAAGA...CTTATGTCTGTGCCTTTGGAACAGATATCTTCCACCCTTTGCTAATGTCCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | TCCAGGACATTAGCAAAGGGTGGAAGATATCTGTTCCAAAGGCACAGACATAAGCCTGCACTTCAGCCATaGAAACATAGGCCATCTCAA | + |
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Preference number: 4 (lower is better) Translates to: SRTLAKGGRYLFQRHRHKPALQP*KHRPSQ Trigger: TTGAGATGGCCTATGTTTGCATGGCTGAAGTGCAGG...CTTATGTCTGTGCCTTTGGAACAGATATCTTCCACCCTTTGCTAATGTCCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR TCA 90 bp | CAACAAAACAGACCTGGGAAAAGAAATCAGGAAGGAGCATTGGAACACTTGGTTGAACTGGACCTGCTCTaGGATTCTCACTTCCAAATC | + |
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Preference number: 4 (lower is better) Translates to: QQNRPGKRNQEGALEHLVELDLL*DSHFQI Trigger: GATTTGGAAGTGAGAATCTCAGAGCAGGTCCAGTTC...AACCAAGTGTTCCAATGCTCCTTCCTGATTTCTTTTCCCAGGTCTGTTTTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR TCA 90 bp | TCAGGAATCCAGGATAAAAGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAACTTTTAAGTAGAGGGTaGTTGCCTTGTCTTCTGACT | + |
|
Preference number: 4 (lower is better) Translates to: SGIQDKSATICLQASVVQLLSRG*LPCLLT Trigger: AGTCAGAAGACAAGGCAATCACCCTCTACTTAAAAG...TTGCACCACACTAGCTTGCAGGCATATTGTGGCACTTTTATCCTGGATTCCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR TCA 90 bp | GTAATTCTGCTTGCTGGTTCATTCATTGGCACATGCACAGCAAGATTTCATATAGGTTCATTTCCCCAGTaGGCCTCAGTGCCTTCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: VILLAGSFIGTCTARFHIGSFPQ*ASVPSH Trigger: ATGAGAAGGCACTGAGGCTCACTGGGGAAATGAACC...TATATGAAATCTTGCTGTGCATGTGCCAATGAATGAACCAGCAAGCAGAATTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CCA 90 bp | AGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAAGCAGCTCTTTTCAGATGTTTGTTCAGTGCCTTCTaGAAATTTCTCTCTGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SATICLQASVVQAALFRCLFSAF*KFLSAS Trigger: AGAAGCAGAGAGAAATTTCCAGAAGGCACTGAACAA...ACATCTGAAAAGAGCTGCTTGCACCACACTAGCTTGCAGGCATATTGTGGCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR TCA 90 bp | TGGGAAAAGAAATCAGGAAGGAGCATTGGAACACTTGGTTGTGAGTATATTAACGAAGCAGATTCTCCATaGCCTGGTCACCATCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: WEKKSGRSIGTLGCEYINEADSP*PGHHQH Trigger: ATGCTGATGGTGACCAGGTCATGGAGAATCTGCTTC...GTTAATATACTCACAACCAAGTGTTCCAATGCTCCTTCCTGATTTCTTTTCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR TCA 90 bp | AGATATCTGTTCCAAAGGCACAGACATAAGGAAAAAGGTTGTGTGATTCTACAGTCCCCAATGGGTTCTTaGTGTCAAGGAACTGGACCT | + |
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Preference number: 4 (lower is better) Translates to: RYLFQRHRHKEKGCVILQSPMGS*CQGTGP Trigger: AGGTCCAGTTCCTTGACATCAAGAACCCATTGGGGA...CTGTAGAATCACACAACCTTTTTCCTTATGTCTGTGCCTTTGGAACAGATATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR TCA 90 bp | CAACAAAACAGACCTGGGAAAAGAAATCAGGAAGGAGCATTGGAACACTTGGTTTCTTCTGACTGCTTATaGAACTGTAGGAAACGGCCA | + |
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Preference number: 4 (lower is better) Translates to: QQNRPGKRNQEGALEHLVSSDCL*NCRKRP Trigger: TGGCCGTTTCCTACAGTTTCATAAGCAGTCAGAAGA...AACCAAGTGTTCCAATGCTCCTTCCTGATTTCTTTTCCCAGGTCTGTTTTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | TCCAGGACATTAGCAAAGGGTGGAAGATATCTGTTCCAAAGGCACAGACATAAGATGAATGGCCTGTTGTaGCAATTCTTGCACATTGTC | + |
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Preference number: 4 (lower is better) Translates to: SRTLAKGGRYLFQRHRHKMNGLL*QFLHIV Trigger: GACAATGTGCAAGAATTGGCACAACAGGCCATTCAT...CTTATGTCTGTGCCTTTGGAACAGATATCTTCCACCCTTTGCTAATGTCCTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CCA 90 bp | CAACAAAACAGACCTGGGAAAAGAAATCAGGAAGGAGCATTGGAACACTTGGTTAGATTCTCCATGACCTaGTCACCATCAGCATTCTCT | + |
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Preference number: 4 (lower is better) Translates to: QQNRPGKRNQEGALEHLVRFSMT*SPSAFS Trigger: AGAGAATGCTGATGGTGACCAGGTCATGGAGAATCT...AACCAAGTGTTCCAATGCTCCTTCCTGATTTCTTTTCCCAGGTCTGTTTTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | CAACAAAACAGACCTGGGAAAAGAAATCAGGAAGGAGCATTGGAACACTTGGTTGACTTGAAAATTCCTTaGACACCTTCTCCACCTTGT | + |
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Preference number: 4 (lower is better) Translates to: QQNRPGKRNQEGALEHLVDLKIP*TPSPPC Trigger: ACAAGGTGGAGAAGGTGTGCAAGGAATTTTCAAGTC...AACCAAGTGTTCCAATGCTCCTTCCTGATTTCTTTTCCCAGGTCTGTTTTGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | AGATATCTGTTCCAAAGGCACAGACATAAGGAAAAAGGTTGTGTGATTCTACAGCCCAGTGAGCCTCAGTaGCTTCTCATAGTAAAACAG | + |
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Preference number: 4 (lower is better) Translates to: RYLFQRHRHKEKGCVILQPSEPQ*LLIVKQ Trigger: CTGTTTTACTATGAGAAGGCACTGAGGCTCACTGGG...CTGTAGAATCACACAACCTTTTTCCTTATGTCTGTGCCTTTGGAACAGATATCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR TCA 90 bp | GTAATTCTGCTTGCTGGTTCATTCATTGGCACATGCACAGCAAGATTTCATATATGTTCTCCTAAATCCTaGAGCTTTAGGGCAAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: VILLAGSFIGTCTARFHICSPKS*SFRARR Trigger: TCTCCTTGCCCTAAAGCTTCAGGATTTAGGAGAACA...TATATGAAATCTTGCTGTGCATGTGCCAATGAATGAACCAGCAAGCAGAATTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR TCA 90 bp | GAGAAAATGTACCTTGCTACTTGGCATTTCAGAAAGAAAACGAACAACAACAACTGGCTGCATAGCGAATaGCATAGCTTTGGCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: EKMYLATWHFRKKTNNNNWLHSE*HSFGKM Trigger: CATCTTGCCAAAGCTATGTCATTCGCTATGCAGCCA...GTTGTTGTTGTTCGTTTTCTTTCTGAAATGCCAAGTAGCAAGGTACATTTTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CCA 90 bp | AGATATCTGTTCCAAAGGCACAGACATAAGGAAAAAGGTTGTGTGATTCTACAGAGGCCATCTCAAATGTaGGCCTCAGTTTCAAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: RYLFQRHRHKEKGCVILQRPSQM*ASVSKS Trigger: AGACTTTGAAACTGAGGCCCACATTTGAGATGGCCT...CTGTAGAATCACACAACCTTTTTCCTTATGTCTGTGCCTTTGGAACAGATATCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CCA 90 bp | AGATATCTGTTCCAAAGGCACAGACATAAGGAAAAAGGTTGTGTGATTCTACAGTCGCAAAGCAGGCCATaGCTTGTTTATAATTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RYLFQRHRHKEKGCVILQSQSRP*LVYNFL Trigger: GAGGAAATTATAAACAAGCCATGGCCTGCTTTGCGA...CTGTAGAATCACACAACCTTTTTCCTTATGTCTGTGCCTTTGGAACAGATATCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | AGATATCTGTTCCAAAGGCACAGACATAAGGAAAAAGGTTGTGTGATTCTACAGACGGAAATATTTGGCTaGATAGCGAATGACATAGCT | + |
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Preference number: 4 (lower is better) Translates to: RYLFQRHRHKEKGCVILQTEIFG*IANDIA Trigger: AGCTATGTCATTCGCTATGCAGCCAAATATTTCCGT...CTGTAGAATCACACAACCTTTTTCCTTATGTCTGTGCCTTTGGAACAGATATCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| 3UTR CAA 72 bp | GAAAGACCAGAAAGAAGTCACAGGAGAAAATGTACCTaGCTACTTGGCATTTCAGAAAGAAAACGAACAACA | + |
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Preference number: 4 (lower is better) Translates to: ERPERSHRRKCT*LLGISERKRTT Trigger: TGTTGTTCGTTTTCTTTCTGAAATGCCAAGTAGCAAGGTACATTTTCTCCTGTGACTTCTTTCTGGTCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR GCA 90 bp | GTAATTCTGCTTGCTGGTTCATTCATTGGCACATGCACAGCAAGATTTCATATACTGGAAATTTCTCTCTaGTTCTTCATACTGGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: VILLAGSFIGTCTARFHILEISL*FFILVN Trigger: ATTCACCAGTATGAAGAAGCAGAGAGAAATTTCCAG...TATATGAAATCTTGCTGTGCATGTGCCAATGAATGAACCAGCAAGCAGAATTAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 90 bp | GGGCCTCAGTTTCAAAGTCTCTTGAAATTCATGAATGGCCTGTTGTaGCAATTCTTGCACATTGTCCTGCCTTCTGGGCTGCCTGTTTCG | + |
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Preference number: 5 (lower is better) Translates to: GPQFQSLLKFMNGLL*QFLHIVLPSGLPVS Trigger: CGAAACAGGCAGCCCAGAAGGCAGGACAATGTGCAAGAATTGGCACAACAGGCCATTCATGAATTTCAAGAGACTTTGAAACTGAGGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CAA 90 bp | TCCAGGATAAAAGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAAGCAGCTCTCGGGATGTCCTCAGTaGGGAGATTTGTTGCTTGTA | + |
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Preference number: 5 (lower is better) Translates to: SRIKVPQYACKLVWCKQLSGCPQ*GDLLLV Trigger: TACAAGCAACAAATCTCCCAACTGAGGACATCCCGA...GAGCTGCTTGCACCACACTAGCTTGCAGGCATATTGTGGCACTTTTATCCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 90 bp | AGCCACGAGGGTCTTGTTGTTCAGTGCCTTCTGGAAATTTCTCTCTaGTTCTTCATACTGGTGAATTTCTGCCTGCACTTCAGCCATGCA | + |
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Preference number: 5 (lower is better) Translates to: SHEGLVVQCLLEISL*FFILVNFCLHFSHA Trigger: TGCATGGCTGAAGTGCAGGCAGAAATTCACCAGTATGAAGAAGCAGAGAGAAATTTCCAGAAGGCACTGAACAACAAGACCCTCGTGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 90 bp | ATGAAGAGCTTTGTCTACGCGATGTTTCCTACGGAAATATTTGGCTaGATAGCGAATGACATAGCTTTGGCAAGATGTGCTGCTGAGGGC | + |
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Preference number: 5 (lower is better) Translates to: MKSFVYAMFPTEIFG*IANDIALARCAAEG Trigger: GCCCTCAGCAGCACATCTTGCCAAAGCTATGTCATTCGCTATGCAGCCAAATATTTCCGTAGGAAACATCGCGTAGACAAAGCTCTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 90 bp | TCTCTGCTTCTTCATACTGGTGAATTTCTGCCTGCACTTCAGCCATaGAAACATAGGCCATCTCAAATGTGGGCCTCAGTTTCAAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: SLLLHTGEFLPALQP*KHRPSQMWASVSKS Trigger: AGACTTTGAAACTGAGGCCCACATTTGAGATGGCCTATGTTTGCATGGCTGAAGTGCAGGCAGAAATTCACCAGTATGAAGAAGCAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 90 bp | TGCCTTCTGGAAATTTCTCTCTGCTTCTTCATACTGGTGAATTTCTaGCTGCACTTCAGCCATGCAAACATAGGCCATCTCAAATGTGGG | + |
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Preference number: 5 (lower is better) Translates to: CLLEISLCFFILVNF*LHFSHANIGHLKCG Trigger: CCCACATTTGAGATGGCCTATGTTTGCATGGCTGAAGTGCAGGCAGAAATTCACCAGTATGAAGAAGCAGAGAGAAATTTCCAGAAGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CAA 90 bp | GTAATTCTGCTTGCTGGTTCATTCATTGGCACATGCACAGCAAGATTTCATATAGCCAATTCTTGCACATaGTCCTGCCTTCTGGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: VILLAGSFIGTCTARFHIANSCT*SCLLGC Trigger: GCAGCCCAGAAGGCAGGACAATGTGCAAGAATTGGC...TATATGAAATCTTGCTGTGCATGTGCCAATGAATGAACCAGCAAGCAGAATTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CAA 90 bp | AGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAAGCAGCTCTTTTCAGATGTTTCATGAATGGCCTGTaGTGCCAATTCTTGCACATT | + |
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Preference number: 5 (lower is better) Translates to: SATICLQASVVQAALFRCFMNGL*CQFLHI Trigger: AATGTGCAAGAATTGGCACAACAGGCCATTCATGAA...ACATCTGAAAAGAGCTGCTTGCACCACACTAGCTTGCAGGCATATTGTGGCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 90 bp | GTGAATATCCTGCTCTATGTGAGCCACGAGGGTCTTGTTGTTCAGTaGCTTCTGGAAATTTCTCTCTGCTTCTTCATACTGGTGAATTTC | + |
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Preference number: 5 (lower is better) Translates to: VNILLYVSHEGLVVQ*LLEISLCFFILVNF Trigger: GAAATTCACCAGTATGAAGAAGCAGAGAGAAATTTCCAGAAGGCACTGAACAACAAGACCCTCGTGGCTCACATAGAGCAGGATATTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS CCA 90 bp | TTTCTGCCTGCACTTCAGCCATGCAAACATAGGCCATCTCAAATGTaGGCCTCAGTTTCAAAGTCTCTTGAAATTCATGAATGGCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: FLPALQPCKHRPSQM*ASVSKSLEIHEWPV Trigger: AACAGGCCATTCATGAATTTCAAGAGACTTTGAAACTGAGGCCCACATTTGAGATGGCCTATGTTTGCATGGCTGAAGTGCAGGCAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CAA 90 bp | CAACAAAACAGACCTGGGAAAAGAAATCAGGAAGGAGCATTGGAACACTTGGTTCTGTTGTGCCAATTCTaGCACATTGTCCTGCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: QQNRPGKRNQEGALEHLVLLCQF*HIVLPS Trigger: AGAAGGCAGGACAATGTGCAAGAATTGGCACAACAG...AACCAAGTGTTCCAATGCTCCTTCCTGATTTCTTTTCCCAGGTCTGTTTTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CAA 90 bp | TCAGGAATCCAGGATAAAAGTGCCACAATATGCCTGCAAGCTAGTGTGGTGCAACAGTTTCAAAGTCTCTaGAAATTCATGAATGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: SGIQDKSATICLQASVVQQFQSL*KFMNGL Trigger: CAGGCCATTCATGAATTTCAAGAGACTTTGAAACTG...TTGCACCACACTAGCTTGCAGGCATATTGTGGCACTTTTATCCTGGATTCCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS-3UTR CAA 90 bp | GTAATTCTGCTTGCTGGTTCATTCATTGGCACATGCACAGCAAGATTTCATATACAGTTGGGAGATTTGTaGCTTGTAGCAGAGCCCTTT | + |
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Preference number: 5 (lower is better) Translates to: VILLAGSFIGTCTARFHIQLGDL*LVAEPF Trigger: AAAGGGCTCTGCTACAAGCAACAAATCTCCCAACTG...TATATGAAATCTTGCTGTGCATGTGCCAATGAATGAACCAGCAAGCAGAATTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS CCA 72 bp | CCTGTTGTGCCAATTCTTGCACATTGTCCTGCCTTCTaGGCTGCCTGTTTCGGGATGTCCTCAGTTGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: PVVPILAHCPAF*AACFGMSSVGR Trigger: TCTCCCAACTGAGGACATCCCGAAACAGGCAGCCCAGAAGGCAGGACAATGTGCAAGAATTGGCACAACAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS TCA 72 bp | CGTAGGCCAGGAGGTTGTGCATCCCCAATGGGTTCTTaGTGTCAAGGAACTGGACCTGCTCTGAGATTCTCA | + |
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Preference number: 6 (lower is better) Translates to: RRPGGCASPMGS*CQGTGPALRFS Trigger: TGAGAATCTCAGAGCAGGTCCAGTTCCTTGACATCAAGAACCCATTGGGGATGCACAACCTCCTGGCCTACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS TCA 72 bp | GAGGAAGGTGATGCCTGCAAGGCCCTGTTTAGAAGATaGAGAGCTTTGTCTACGCGATGTTTCCTACGGAAA | + |
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Preference number: 6 (lower is better) Translates to: EEGDACKALFRR*RALSTRCFLRK Trigger: TTTCCGTAGGAAACATCGCGTAGACAAAGCTCTTCATCTTCTAAACAGGGCCTTGCAGGCATCACCTTCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS CAA 72 bp | CTCTTGAAATTCATGAATGGCCTGTTGTGCCAATTCTaGCACATTGTCCTGCCTTCTGGGCTGCCTGTTTCG | + |
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Preference number: 6 (lower is better) Translates to: LLKFMNGLLCQF*HIVLPSGLPVS Trigger: CGAAACAGGCAGCCCAGAAGGCAGGACAATGTGCAAGAATTGGCACAACAGGCCATTCATGAATTTCAAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 72 bp | CTTCATACTGGTGAATTTCTGCCTGCACTTCAGCCATaGAAACATAGGCCATCTCAAATGTGGGCCTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: LHTGEFLPALQP*KHRPSQMWASV Trigger: AACTGAGGCCCACATTTGAGATGGCCTATGTTTGCATGGCTGAAGTGCAGGCAGAAATTCACCAGTATGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 72 bp | CTGCTCTATGTGAGCCACGAGGGTCTTGTTGTTCAGTaGCTTCTGGAAATTTCTCTCTGCTTCTTCATACTG | + |
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Preference number: 6 (lower is better) Translates to: LLYVSHEGLVVQ*LLEISLCFFIL Trigger: CAGTATGAAGAAGCAGAGAGAAATTTCCAGAAGGCACTGAACAACAAGACCCTCGTGGCTCACATAGAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS CCA 72 bp | TTGTGCATCCCCAATGGGTTCTTGATGTCAAGGAACTaGACCTGCTCTGAGATTCTCACTTCCAAATCAGGT | + |
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Preference number: 6 (lower is better) Translates to: LCIPNGFLMSRN*TCSEILTSKSG Trigger: ACCTGATTTGGAAGTGAGAATCTCAGAGCAGGTCCAGTTCCTTGACATCAAGAACCCATTGGGGATGCACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 72 bp | TTTCAAAGTCTCTTGAAATTCATGAATGGCCTGTTGTaGCAATTCTTGCACATTGTCCTGCCTTCTGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: FQSLLKFMNGLL*QFLHIVLPSGL Trigger: CAGCCCAGAAGGCAGGACAATGTGCAAGAATTGGCACAACAGGCCATTCATGAATTTCAAGAGACTTTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS GCA 72 bp | GAAATTTCTCTCTGCTTCTTCATACTGGTGAATTTCTaGCTGCACTTCAGCCATGCAAACATAGGCCATCTC | + |
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Preference number: 6 (lower is better) Translates to: EISLCFFILVNF*LHFSHANIGHL Trigger: GAGATGGCCTATGTTTGCATGGCTGAAGTGCAGGCAGAAATTCACCAGTATGAAGAAGCAGAGAGAAATTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS CAA 72 bp | GGCCATCTCAAATGTGGGCCTCAGTTTCAAAGTCTCTaGAAATTCATGAATGGCCTGTTGTGCCAATTCTTG | + |
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Preference number: 6 (lower is better) Translates to: GHLKCGPQFQSL*KFMNGLLCQFL Trigger: CAAGAATTGGCACAACAGGCCATTCATGAATTTCAAGAGACTTTGAAACTGAGGCCCACATTTGAGATGGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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| CDS CAA 90 bp | GCAAACATAGGCCATCTCAAATGTGGGCCTCAGTTTCAAAGTCTCTaGAAATTCATGAATGGCCTGTTGTGCCAATTCTTGCACATTGTC | + |
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Preference number: 6 (lower is better) Translates to: ANIGHLKCGPQFQSL*KFMNGLLCQFLHIV Trigger: GACAATGTGCAAGAATTGGCACAACAGGCCATTCATGAATTTCAAGAGACTTTGAAACTGAGGCCCACATTTGAGATGGCCTATGTTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102824.4 |
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