Pregenerated sensors for IFI44L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039146Ensembl transcript IDs: ENSMUST00000046739.6
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACCTCTGTCCTCCACATATAAAACTGTACATGGTGTGGGCATATaGAAGCCCATTTTTCCGAGGACCTCTCTCTCTCTCCACTTCTCA | + |
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Preference number: 1 (lower is better) Translates to: TPLSSTYKTVHGVGI*KPIFPRTSLSLHFS Trigger: TGAGAAGTGGAGAGAGAGAGAGGTCCTCGGAAAAATGGGCTTCCATATGCCCACACCATGTACAGTTTTATATGTGGAGGACAGAGGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR GCA 90 bp | AGAGACATGCATGCTTTCAACCAGAGACAAGTGAAACTCTCTCCATaGTTTATTTCCTTGTCCTCATTCCAGCATCTTACTCTCCATATC | + |
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Preference number: 1 (lower is better) Translates to: RDMHAFNQRQVKLSP*FISLSSFQHLTLHI Trigger: GATATGGAGAGTAAGATGCTGGAATGAGGACAAGGAAATAAAGCATGGAGAGAGTTTCACTTGTCTCTGGTTGAAAGCATGCATGTCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR CCA 90 bp | TACAAGGCAAATCCAGTCCTGTTTCTCGAGAACTCATGCTCCATTTaGAATAGCAGACATCTACATCATTTTCTAACTACTGTGCAGTCA | + |
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Preference number: 1 (lower is better) Translates to: YKANPVLFLENSCSI*NSRHLHHFLTTVQS Trigger: TGACTGCACAGTAGTTAGAAAATGATGTAGATGTCTGCTATTCCAAATGGAGCATGAGTTCTCGAGAAACAGGACTGGATTTGCCTTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR-3UTR TCA 90 bp | CAATTCCGGTACATAGAGTTGTATAATGTACTGGAGAAGGAAAAGCAAAGCCAACCAGTGAACTACAGCTaGGGGTTTCCCAAAAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: QFRYIELYNVLEKEKQSQPVNYS*GFPKRQ Trigger: CTGCCTTTTGGGAAACCCTCAGCTGTAGTTCACTGG...TTGGCTTTGCTTTTCCTTCTCCAGTACATTATACAACTCTATGTACCGGAATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR-3UTR GCA 90 bp | ATGCATGCTTTCAACCAGAGACAAGTGAAACTCTCTCCATGCTTTATTTCCTTGTGTCACAGCAGCATGTaGCAATCCTCAGATTGCTCC | + |
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Preference number: 2 (lower is better) Translates to: MHAFNQRQVKLSPCFISLCHSSM*QSSDCS Trigger: GGAGCAATCTGAGGATTGGCACATGCTGCTGTGACA...CAAGGAAATAAAGCATGGAGAGAGTTTCACTTGTCTCTGGTTGAAAGCATGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR-3UTR GCA 90 bp | AGCAGACATCTACATCATTTTCTAACTACTGTGCAGTCAATTCCGGTACATAGAAGGCTTTCAGCAGAGTaGCTCTTCTTGGGGCAATCA | + |
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Preference number: 2 (lower is better) Translates to: SRHLHHFLTTVQSIPVHRRLSAE*LFLGQS Trigger: TGATTGCCCCAAGAAGAGGCACTCTGCTGAAAGCCT...TCTATGTACCGGAATTGACTGCACAGTAGTTAGAAAATGATGTAGATGTCTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR CAA 90 bp | GCTTTCAACCAGAGACAAGTGAAACTCTCTCCATGCTTTATTTCCTaGTCCTCATTCCAGCATCTTACTCTCCATATCTTCCCATCCATA | + |
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Preference number: 2 (lower is better) Translates to: AFNQRQVKLSPCFIS*SSFQHLTLHIFPSI Trigger: TATGGATGGGAAGATATGGAGAGTAAGATGCTGGAATGAGGACAAGGAAATAAAGCATGGAGAGAGTTTCACTTGTCTCTGGTTGAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR CAA 90 bp | AGTTGTATAATGTACTGGAGAAGGAAAAGCAAAGCCAAGTTTGTTTaGCCTAAGGAGCTTGAGAAAGACACATGTAGATGTGTACACACA | + |
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Preference number: 2 (lower is better) Translates to: SCIMYWRRKSKAKFV*PKELEKDTCRCVHT Trigger: TGTGTGTACACATCTACATGTGTCTTTCTCAAGCTCCTTAGGCAAAACAAACTTGGCTTTGCTTTTCCTTCTCCAGTACATTATACAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR-3UTR GCA 90 bp | CATCTTACTCTCCATATCTTCCCATCCATATGGAGTGGATATCTAAGTAAATATTGCCAATCCTCAGATTaGTCCAAAACAAGGCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: HLTLHIFPSIWSGYLSKYCQSSD*SKTRQA Trigger: TGCTTGCCTTGTTTTGGAGCAATCTGAGGATTGGCA...ATATTTACTTAGATATCCACTCCATATGGATGGGAAGATATGGAGAGTAAGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR CCA 72 bp | CACCTCTGTCCTCCACATATAAAACTGTACATGGTGTaGGCATATGGAAGCCCATTTTTCCGAGGACCTCTC | + |
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Preference number: 3 (lower is better) Translates to: HLCPPHIKLYMV*AYGSPFFRGPL Trigger: GAGAGGTCCTCGGAAAAATGGGCTTCCATATGCCCACACCATGTACAGTTTTATATGTGGAGGACAGAGGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR CCA 72 bp | TCCTCCACATATAAAACTGTACATGGTGTGGGCATATaGAAGCCCATTTTTCCGAGGACCTCTCTCTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: SSTYKTVHGVGI*KPIFPRTSLSL Trigger: GAGAGAGAGAGAGGTCCTCGGAAAAATGGGCTTCCATATGCCCACACCATGTACAGTTTTATATGTGGAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR-3UTR CAA 90 bp | AGACCTTGTGATGAGCTTTGGGACTACAAGGCAAATCCAGTCCTGTTTCTCGAGTTCCGGTACATAGAGTaGTATAATGTACTGGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: RPCDELWDYKANPVLFLEFRYIE*YNVLEK Trigger: CTTCTCCAGTACATTATACAACTCTATGTACCGGAA...CTCGAGAAACAGGACTGGATTTGCCTTGTAGTCCCAAAGCTCATCACAAGGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR TCA 72 bp | TGTTTAGAGACATGCATGCTTTCAACCAGAGACAAGTaGAACTCTCTCCATGCTTTATTTCCTTGTCCTCAT | + |
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Preference number: 3 (lower is better) Translates to: CLETCMLSTRDK*NSLHALFPCPH Trigger: ATGAGGACAAGGAAATAAAGCATGGAGAGAGTTTCACTTGTCTCTGGTTGAAAGCATGCATGTCTCTAAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR CCA 72 bp | AATCCAGTCCTGTTTCTCGAGAACTCATGCTCCATTTaGAATAGCAGACATCTACATCATTTTCTAACTACT | + |
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Preference number: 3 (lower is better) Translates to: NPVLFLENSCSI*NSRHLHHFLTT Trigger: AGTAGTTAGAAAATGATGTAGATGTCTGCTATTCCAAATGGAGCATGAGTTCTCGAGAAACAGGACTGGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR-3UTR CAA 90 bp | TGTATAATGTACTGGAGAAGGAAAAGCAAAGCCAAGTTTGTTTTGCCTAAGGAGTTAATATGTGACTCATaGTTGAAGGACAGCGAACAT | + |
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Preference number: 3 (lower is better) Translates to: CIMYWRRKSKAKFVLPKELICDS*LKDSEH Trigger: ATGTTCGCTGTCCTTCAACAATGAGTCACATATTAA...CTCCTTAGGCAAAACAAACTTGGCTTTGCTTTTCCTTCTCCAGTACATTATACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR TCA 90 bp | CTAAGGAGCTTGAGAAAGACACATGTAGATGTGTACACACACTGGATGGTTCATCCCTCAACATCTGCCTaGGAGCAGCAAAGACCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LRSLRKTHVDVYTHWMVHPSTSA*EQQRPE Trigger: TTCTGGTCTTTGCTGCTCTCAGGCAGATGTTGAGGG...ATGAACCATCCAGTGTGTGTACACATCTACATGTGTCTTTCTCAAGCTCCTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR GCA 90 bp | ATGCATGCTTTCAACCAGAGACAAGTGAAACTCTCTCCATGCTTTATTTCCTTGGCAGCCCTCAACATCTaGCTGAGAGCAGCAAAGACC | + |
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Preference number: 4 (lower is better) Translates to: MHAFNQRQVKLSPCFISLAALNI*LRAAKT Trigger: GGTCTTTGCTGCTCTCAGGCAGATGTTGAGGGCTGC...CAAGGAAATAAAGCATGGAGAGAGTTTCACTTGTCTCTGGTTGAAAGCATGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR TCA 90 bp | TGTATAATGTACTGGAGAAGGAAAAGCAAAGCCAAGTTTGTTTTGCCTAAGGAGACAAAAGCCACGCAGTaGATCCTGTCCTTCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: CIMYWRRKSKAKFVLPKETKATQ*ILSFRG Trigger: GCCTCTGAAGGACAGGATTCACTGCGTGGCTTTTGT...CTCCTTAGGCAAAACAAACTTGGCTTTGCTTTTCCTTCTCCAGTACATTATACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR TCA 90 bp | ATGTGCCAATCCTCAGATTGCTCCAAAACAAGGCAAGCAAAAGCAGAAGCTAGCCTGAAGCATAATTGCTaGCCATCAAGATATTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: MCQSSDCSKTRQAKAEASLKHNC*PSRYWL Trigger: TAGCCAATATCTTGATGGTCAGCAATTATGCTTCAG...GCTAGCTTCTGCTTTTGCTTGCCTTGTTTTGGAGCAATCTGAGGATTGGCACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR CAA 72 bp | CAGAGACAAGTGAAACTCTCTCCATGCTTTATTTCCTaGTCCTCATTCCAGCATCTTACTCTCCATATCTTC | + |
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Preference number: 4 (lower is better) Translates to: QRQVKLSPCFIS*SSFQHLTLHIF Trigger: GAAGATATGGAGAGTAAGATGCTGGAATGAGGACAAGGAAATAAAGCATGGAGAGAGTTTCACTTGTCTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR TCA 90 bp | CAATTCCGGTACATAGAGTTGTATAATGTACTGGAGAAGGAAAAGCAAAGCCAACATTTTTGGACATTCTaGACCTGGCTTAGAGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: QFRYIELYNVLEKEKQSQHFWTF*TWLREV Trigger: GACTTCTCTAAGCCAGGTTCAGAATGTCCAAAAATG...TTGGCTTTGCTTTTCCTTCTCCAGTACATTATACAACTCTATGTACCGGAATTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| 3UTR CAA 72 bp | ATGTACTGGAGAAGGAAAAGCAAAGCCAAGTTTGTTTaGCCTAAGGAGCTTGAGAAAGACACATGTAGATGT | + |
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Preference number: 4 (lower is better) Translates to: MYWRRKSKAKFV*PKELEKDTCRC Trigger: ACATCTACATGTGTCTTTCTCAAGCTCCTTAGGCAAAACAAACTTGGCTTTGCTTTTCCTTCTCCAGTACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR GCA 90 bp | CAATTCCGGTACATAGAGTTGTATAATGTACTGGAGAAGGAAAAGCAAAGCCAAAGTTTCTGTCATGTTTaGAAAACTGTCATCAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: QFRYIELYNVLEKEKQSQSFCHV*KTVIKN Trigger: GTTCTTGATGACAGTTTTGCAAACATGACAGAAACT...TTGGCTTTGCTTTTCCTTCTCCAGTACATTATACAACTCTATGTACCGGAATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS GCA 90 bp | TCGAGAGGCAAGTCCTCTAAGGCATCATCCGCAGCCCTCAACATCTaGCTGAGAGCAGCAAAGACCAGAATATCCTTCATAGGCTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: SRGKSSKASSAALNI*LRAAKTRISFIGSN Trigger: GTTGGAGCCTATGAAGGATATTCTGGTCTTTGCTGCTCTCAGGCAGATGTTGAGGGCTGCGGATGATGCCTTAGAGGACTTGCCTCTCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR CAA 90 bp | GACCTTGTGATGAGCTTTGGGACTACAAGGCAAATCCAGTCCTGTTTCTCGAGACAGTTTCTGTCATGTTaGCAAAACTGTCATCAAGAA | + |
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Preference number: 5 (lower is better) Translates to: DLVMSFGTTRQIQSCFSRQFLSC*QNCHQE Trigger: TTCTTGATGACAGTTTTGCAAACATGACAGAAACTG...TCTCGAGAAACAGGACTGGATTTGCCTTGTAGTCCCAAAGCTCATCACAAGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR CAA 90 bp | GACCTTGTGATGAGCTTTGGGACTACAAGGCAAATCCAGTCCTGTTTCTCGAGACTGACCATCAAGATATaGGCTATAGGAATATTTAGC | + |
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Preference number: 5 (lower is better) Translates to: DLVMSFGTTRQIQSCFSRLTIKI*AIGIFS Trigger: GCTAAATATTCCTATAGCCAATATCTTGATGGTCAG...TCTCGAGAAACAGGACTGGATTTGCCTTGTAGTCCCAAAGCTCATCACAAGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS TCA 90 bp | AGCAGCAAAGACCAGAATATCCTTCATAGGCTCCAACCTTCGCTCTaGAGCATAATTGCTGACCATCAAGATATTGGCTATAGGAATATT | + |
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Preference number: 5 (lower is better) Translates to: SSKDQNILHRLQPSL*SIIADHQDIGYRNI Trigger: AATATTCCTATAGCCAATATCTTGATGGTCAGCAATTATGCTTCAGAGCGAAGGTTGGAGCCTATGAAGGATATTCTGGTCTTTGCTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS-3UTR CAA 90 bp | AGCAGACATCTACATCATTTTCTAACTACTGTGCAGTCAATTCCGGTACATAGAAGTGTATTAACAGAGTaGATGTCTAGGACAAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: SRHLHHFLTTVQSIPVHRSVLTE*MSRTKA Trigger: GGCTTTTGTCCTAGACATCAACTCTGTTAATACACT...TCTATGTACCGGAATTGACTGCACAGTAGTTAGAAAATGATGTAGATGTCTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS TCA 90 bp | ATCAAGATATTGGCTATAGGAATATTTAGCCATTTTTGGACATTCTaGACCTGGCTTAGAGAAGTCACAGTTTCTGTCATGTTTGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: IKILAIGIFSHFWTF*TWLREVTVSVMFAK Trigger: TTTTGCAAACATGACAGAAACTGTGACTTCTCTAAGCCAGGTTCAGAATGTCCAAAAATGGCTAAATATTCCTATAGCCAATATCTTGAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS GCA 72 bp | AAGTCCTCTAAGGCATCATCCGCAGCCCTCAACATCTaGCTGAGAGCAGCAAAGACCAGAATATCCTTCATA | + |
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Preference number: 6 (lower is better) Translates to: KSSKASSAALNI*LRAAKTRISFI Trigger: TATGAAGGATATTCTGGTCTTTGCTGCTCTCAGGCAGATGTTGAGGGCTGCGGATGATGCCTTAGAGGACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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| CDS TCA 72 bp | GACCAGAATATCCTTCATAGGCTCCAACCTTCGCTCTaGAGCATAATTGCTGACCATCAAGATATTGGCTAT | + |
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Preference number: 6 (lower is better) Translates to: DQNILHRLQPSL*SIIADHQDIGY Trigger: ATAGCCAATATCTTGATGGTCAGCAATTATGCTTCAGAGCGAAGGTTGGAGCCTATGAAGGATATTCTGGTC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046739.6 |
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