Pregenerated sensors for IFI27L2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079017Ensembl transcript IDs: ENSMUST00000055071.9
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CATTCTTTGACATCAGTGAGGGTTCTGAAGGTGCCTTTTGGAACTTCATCTCCTGTACAGGCTTTGAGTTaGGCTGATAGAAGTGTCATC | + |
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Preference number: 2 (lower is better) Translates to: HSLTSVRVLKVPFGTSSPVQALS*ADRSVI Trigger: GATGACACTTCTATCAGCTCAACTCAAAGCCTGTAC...AGGAGATGAAGTTCCAAAAGGCACCTTCAGAACCCTCACTGATGTCAAAGAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR GCA 90 bp | GAGGGTTCTGAAGGTGCCTTTTGGAACTTCATCTCCTGCGTAGTCTGTACAGGCTACCAGGCTTCCTGCTaGAACTCCACCTCCATTGGC | + |
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Preference number: 4 (lower is better) Translates to: EGSEGAFWNFISCVVCTGYQASC*NSTSIG Trigger: GCCAATGGAGGTGGAGTTGCAGCAGGAAGCCTGGTA...GCCTGTACAGACTACGCAGGAGATGAAGTTCCAAAAGGCACCTTCAGAACCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR GCA 90 bp | TCTTTGACATCAGTGAGGGTTCTGAAGGTGCCTTTTGGAACTTCATCTCCTGCGTGCTATGGAGGCAGCTaGAATGCCTGTCCCAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: SLTSVRVLKVPFGTSSPACYGGS*NACPSE Trigger: TTCACTGGGACAGGCATTGCAGCTGCCTCCATAGCA...CGCAGGAGATGAAGTTCCAAAAGGCACCTTCAGAACCCTCACTGATGTCAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR TCA 90 bp | TATACTTTGTTGTTTTCATCATTCTTTGACATCAGTGAGGGTTCTGAAGGTGCCCAATGCCTGTCCCAGTaGAGCCCATGGCAGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: YTLLFSSFFDISEGSEGAQCLSQ*SPWQPG Trigger: CCCTGGCTGCCATGGGCTTCACTGGGACAGGCATTG...GGCACCTTCAGAACCCTCACTGATGTCAAAGAATGATGAAAACAACAAAGTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR CCA 90 bp | TCATTCTTTGACATCAGTGAGGGTTCTGAAGGTGCCTTTTGGAACTTCATCTCCCTGCTGATTGGAGTGTaGCTACCAGGCTTCCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SFFDISEGSEGAFWNFISLLIGV*LPGFLL Trigger: CAGCAGGAAGCCTGGTAGCCACACTCCAATCAGCAG...GGAGATGAAGTTCCAAAAGGCACCTTCAGAACCCTCACTGATGTCAAAGAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR GCA 90 bp | TTTCATCATTCTTTGACATCAGTGAGGGTTCTGAAGGTGCCTTTTGGAACTTCAGGCTACCAGGCTTCCTaGTGCAACTCCACCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: FHHSLTSVRVLKVPFGTSGYQAS*CNSTSI Trigger: AATGGAGGTGGAGTTGCAGCAGGAAGCCTGGTAGCC...TGAAGTTCCAAAAGGCACCTTCAGAACCCTCACTGATGTCAAAGAATGATGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR CCA 90 bp | CCAGCCCATATACTTTGTTGTTTTCATCATTCTTTGACATCAGTGAGGGTTCTGAGGACCCCTGCTGATTaGAGTGTGGCTACCAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: PAHILCCFHHSLTSVRVLRTPAD*SVATRL Trigger: AAGCCTGGTAGCCACACTCCAATCAGCAGGGGTCCT...CAGAACCCTCACTGATGTCAAAGAATGATGAAAACAACAAAGTATATGGGCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR CCA 90 bp | ACACCAGCCCATATACTTTGTTGTTTTCATCATTCTTTGACATCAGTGAGGGTTCAACTCCACCTCCATTaGCAATTGCTGCAGCAGACA | + |
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Preference number: 4 (lower is better) Translates to: TPAHILCCFHHSLTSVRVQLHLH*QLLQQT Trigger: TGTCTGCTGCAGCAATTGCCAATGGAGGTGGAGTTG...AACCCTCACTGATGTCAAAGAATGATGAAAACAACAAAGTATATGGGCTGGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| 3UTR CAA 72 bp | ACACCAGCCCATATACTTTGTTGTTTTCATCATTCTTaGACATCAGTGAGGGTTCTGAAGGTGCCTTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: TPAHILCCFHHS*TSVRVLKVPFG Trigger: TCCAAAAGGCACCTTCAGAACCCTCACTGATGTCAAAGAATGATGAAAACAACAAAGTATATGGGCTGGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR GCA 90 bp | AGGAACACCAGCCCATATACTTTGTTGTTTTCATCATTCTTTGACATCAGTGAGACCTCCATTGGCAATTaGTGCAGCAGACATCATCTT | + |
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Preference number: 4 (lower is better) Translates to: RNTSPYTLLFSSFFDISETSIGN*CSRHHL Trigger: AAGATGATGTCTGCTGCAGCAATTGCCAATGGAGGT...CTCACTGATGTCAAAGAATGATGAAAACAACAAAGTATATGGGCTGGTGTTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS CCA 90 bp | AGGATGGCATTTGTTGATGTGGAGAGTCCAAGGACCCCTGCTGATTaGAGTGTGGCTACCAGGCTTCCTGCTGCAACTCCACCTCCATTG | + |
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Preference number: 5 (lower is better) Translates to: RMAFVDVESPRTPAD*SVATRLPAATPPPL Trigger: CAATGGAGGTGGAGTTGCAGCAGGAAGCCTGGTAGCCACACTCCAATCAGCAGGGGTCCTTGGACTCTCCACATCAACAAATGCCATCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS CCA 90 bp | CATTTGTTGATGTGGAGAGTCCAAGGACCCCTGCTGATTGGAGTGTaGCTACCAGGCTTCCTGCTGCAACTCCACCTCCATTGGCAATTG | + |
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Preference number: 5 (lower is better) Translates to: HLLMWRVQGPLLIGV*LPGFLLQLHLHWQL Trigger: CAATTGCCAATGGAGGTGGAGTTGCAGCAGGAAGCCTGGTAGCCACACTCCAATCAGCAGGGGTCCTTGGACTCTCCACATCAACAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR CAA 90 bp | AGTGAGGGTTCTGAAGGTGCCTTTTGGAACTTCATCTCCTGCGTAGTCTGTACAGCAACTCCACCTCCATaGGCAATTGCTGCAGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: SEGSEGAFWNFISCVVCTATPPP*AIAAAD Trigger: GTCTGCTGCAGCAATTGCCAATGGAGGTGGAGTTGC...TGTACAGACTACGCAGGAGATGAAGTTCCAAAAGGCACCTTCAGAACCCTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS-3UTR CAA 90 bp | AGGAACACCAGCCCATATACTTTGTTGTTTTCATCATTCTTTGACATCAGTGAGCCCCTAGGATGGCATTaGTTGATGTGGAGAGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: RNTSPYTLLFSSFFDISEPLGWH*LMWRVQ Trigger: TTGGACTCTCCACATCAACAAATGCCATCCTAGGGG...CTCACTGATGTCAAAGAATGATGAAAACAACAAAGTATATGGGCTGGTGTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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| CDS CCA 72 bp | TTTGTTGATGTGGAGAGTCCAAGGACCCCTGCTGATTaGAGTGTGGCTACCAGGCTTCCTGCTGCAACTCCA | + |
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Preference number: 6 (lower is better) Translates to: FVDVESPRTPAD*SVATRLPAATP Trigger: TGGAGTTGCAGCAGGAAGCCTGGTAGCCACACTCCAATCAGCAGGGGTCCTTGGACTCTCCACATCAACAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055071.9 |
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