RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IFI214 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070501

Ensembl transcript IDs: ENSMUST00000090406.6, ENSMUST00000097463.11, ENSMUST00000139092.8

Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGATGCACTGTATATATTTATGAACCCATTGCAGCCAACATAGTTTaGGATGGTAAGGACCTTATTTGGTATGAACTTCTCCTTCAGGAC +
Preference number: 1 (lower is better)
Translates to: RCTVYIYEPIAANIV*DGKDLIWYELLLQD
Trigger: GTCCTGAAGGAGAAGTTCATACCAAATAAGGTCCTTACCATCTCAAACTATGTTGGCTGCAATGGGTTCATAAATATATACAGTGCATCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR TCA 90 bp TGGTCTCAAGATTTCCTTGACATTCTTTCACCCTATATTCAGAGGTaGGATTCTTTACTGTTGCAAGCTGTACAATGTACTCTGATCATC +
Preference number: 1 (lower is better)
Translates to: WSQDFLDILSPYIQR*DSLLLQAVQCTLII
Trigger: GATGATCAGAGTACATTGTACAGCTTGCAACAGTAAAGAATCTCACCTCTGAATATAGGGTGAAAGAATGTCAAGGAAATCTTGAGACCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR TCA 90 bp ATTACTGTGGTGTTAACATTATGGACTTCAAGAGAAGTAGGAGGTTaGCTGACCAACTTGGGTACCATAGGATTTTGTTTATTGCATAGG +
Preference number: 1 (lower is better)
Translates to: ITVVLTLWTSREVGG*LTNLGTIGFCLLHR
Trigger: CCTATGCAATAAACAAAATCCTATGGTACCCAAGTTGGTCAGTCAACCTCCTACTTCTCTTGAAGTCCATAATGTTAACACCACAGTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR TCA 90 bp GTTAGGAAGAAATATGAAGTCAAAGTGAATAACAGGCCACATAAATaGAGATACGGAAGCATAGCAATTACTGTGGTGTTAACATTATGG +
Preference number: 1 (lower is better)
Translates to: VRKKYEVKVNNRPHK*RYGSIAITVVLTLW
Trigger: CCATAATGTTAACACCACAGTAATTGCTATGCTTCCGTATCTTCATTTATGTGGCCTGTTATTCACTTTGACTTCATATTTCTTCCTAAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR-3UTR GCA 90 bp GAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCAAGTGGATGAAACATGTTTATTaGACCTTGGTCTGCAGACCC +
Preference number: 2 (lower is better)
Translates to: EASSALLEGVGYMPQAKWMKHVY*TLVCRP
Trigger: GGGTCTGCAGACCAAGGTGCAATAAACATGTTTCAT...CCACTTGGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR-3UTR GCA 90 bp GAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCAAGTGGGAGATTCTTTACTGTTaGAAGCTGTACAATGTACTC +
Preference number: 2 (lower is better)
Translates to: EASSALLEGVGYMPQAKWEILYC*KLYNVL
Trigger: GAGTACATTGTACAGCTTGCAACAGTAAAGAATCTC...CCACTTGGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR-3UTR CCA 90 bp GGTAAGGACCTTATTTGGTATGAACTTCTCCTTCAGGACAATATCAAACACCTTGTAGCCACGGTGGCATaGAACATCTTCTCTCCTTTC +
Preference number: 2 (lower is better)
Translates to: GKDLIWYELLLQDNIKHLVATVA*NIFSPF
Trigger: GAAAGGAGAGAAGATGTTCCATGCCACCGTGGCTAC...AAGGTGTTTGATATTGTCCTGAAGGAGAAGTTCATACCAAATAAGGTCCTTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR-3UTR GCA 90 bp TTTATTGCACCTTGGTCTGCAGACCCAGTTTTAAAGCAACCGACAAATGCAAGATGTAGATCTCAGCCATaGTTTTTCTTCATCTGGGGT +
Preference number: 2 (lower is better)
Translates to: FIAPWSADPVLKQPTNARCRSQP*FFFIWG
Trigger: ACCCCAGATGAAGAAAAAGCATGGCTGAGATCTACA...TCTTGCATTTGTCGGTTGCTTTAAAACTGGGTCTGCAGACCAAGGTGCAATAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
3UTR-3UTR GCA 90 bp GGTGGCATGGAACATCTTCTCTCCTTTCATGTCATATGCAAATGGTTCTGTTACTGTAGATCTCAGCCATaGTTTTTCTTCATCTGGGGT +
Preference number: 2 (lower is better)
Translates to: GGMEHLLSFHVICKWFCYCRSQP*FFFIWG
Trigger: ACCCCAGATGAAGAAAAAGCATGGCTGAGATCTACA...GTAACAGAACCATTTGCATATGACATGAAAGGAGAGAAGATGTTCCATGCCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR-3UTR TCA 90 bp ATCATCTCCTATCTCATAGCAAATGTAGTACCCCCTTTCTTCTTTCTTACATACGGCGCTTTTCCTCAGTaGAAGTGGGATATTCATTGG +
Preference number: 2 (lower is better)
Translates to: IISYLIANVVPPFFFLTYGAFPQ*KWDIHW
Trigger: CCAATGAATATCCCACTTTCACTGAGGAAAAGCGCC...GTATGTAAGAAAGAAGAAAGGGGGTACTACATTTGCTATGAGATAGGAGATGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR-3UTR GCA 90 bp AACTTCTCCTTCAGGACAATATCAAACACCTTTACTCTAAAGAATTCTGTTTCCGTCTCTTCAAGTTCCTaGCTGAGTTTCTGCTTTGGC +
Preference number: 2 (lower is better)
Translates to: NFSFRTISNTFTLKNSVSVSSSS*LSFCFG
Trigger: GCCAAAGCAGAAACTCAGGCAGGAACTTGAAGAGAC...GGAAACAGAATTCTTTAGAGTAAAGGTGTTTGATATTGTCCTGAAGGAGAAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR-3UTR GCA 90 bp TTTACTGAGGCCTTTGCCTACACAAATTTCCCAAGGGGTCAGAAACACTTATATTCAAGAGCATACAATTaGTTTCTGCTTTCTGCTCTG +
Preference number: 2 (lower is better)
Translates to: FTEAFAYTNFPRGQKHLYSRAYN*FLLSAL
Trigger: CAGAGCAGAAAGCAGAAAGCAATTGTATGCTCTTGA...ATATAAGTGTTTCTGACCCCTTGGGAAATTTGTGTAGGCAAAGGCCTCAGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR CAA 90 bp CCTTTGCCTACACAAATTTCCCAAGGGGTCAGAAACACTTATATCTaGTACTTATCTTGTTATGGCTGCTATTTCTACCTTTCCTTTGCT +
Preference number: 2 (lower is better)
Translates to: PLPTQISQGVRNTYI*YLSCYGCYFYLSFA
Trigger: AGCAAAGGAAAGGTAGAAATAGCAGCCATAACAAGATAAGTACAAGATATAAGTGTTTCTGACCCCTTGGGAAATTTGTGTAGGCAAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR-3UTR TCA 90 bp CTTCAGGACAATATCAAACACCTTTACTCTAAAGAATTCTGTTTCCGTAGCCACTTTGGCTTCCCTCAATaGAGGAAGCTTAAACTGAAA +
Preference number: 2 (lower is better)
Translates to: LQDNIKHLYSKEFCFRSHFGFPQ*RKLKLK
Trigger: TTTCAGTTTAAGCTTCCTTCATTGAGGGAAGCCAAA...GTGGCTACGGAAACAGAATTCTTTAGAGTAAAGGTGTTTGATATTGTCCTGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR-3UTR TCA 90 bp TTTACTGAGGCCTTTGCCTACACAAATTTCCCAAGGGGTCAGAAACACTTATATGTCTCAAGATTTCCTTaGCATTCTTTCACCCTATAT +
Preference number: 2 (lower is better)
Translates to: FTEAFAYTNFPRGQKHLYVSRFP*HSFTLY
Trigger: ATATAGGGTGAAAGAATGTCAAGGAAATCTTGAGAC...ATATAAGTGTTTCTGACCCCTTGGGAAATTTGTGTAGGCAAAGGCCTCAGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR CAA 90 bp ACAAATTTCCCAAGGGGTCAGAAACACTTATATCTTGTACTTATCTaGTTATGGCTGCTATTTCTACCTTTCCTTTGCTCCTTTTCTCCA +
Preference number: 2 (lower is better)
Translates to: TNFPRGQKHLYLVLI*LWLLFLPFLCSFSP
Trigger: TGGAGAAAAGGAGCAAAGGAAAGGTAGAAATAGCAGCCATAACAAGATAAGTACAAGATATAAGTGTTTCTGACCCCTTGGGAAATTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR-3UTR CAA 90 bp GAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCAAGTGGGGTCTCAAGATTTCCTaGACATTCTTTCACCCTATA +
Preference number: 3 (lower is better)
Translates to: EASSALLEGVGYMPQAKWGLKIS*TFFHPI
Trigger: TATAGGGTGAAAGAATGTCAAGGAAATCTTGAGACC...CCACTTGGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR TCA 72 bp GTTGATTTTAGGTGTTCGATTGGCGCTTTTCCTCAGTaGAAGTGGGATATTCATTGGTTCGCCATCATTTAC +
Preference number: 3 (lower is better)
Translates to: VDFRCSIGAFPQ*KWDIHWFAIIY
Trigger: GTAAATGATGGCGAACCAATGAATATCCCACTTTCACTGAGGAAAAGCGCCAATCGAACACCTAAAATCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR TCA 72 bp ATGAGAGAGGTAATTAACACTGCAGGAAGCCTTGACTaGGACTCATTTGTTTTAGGACAGCTTTCTCATGGT +
Preference number: 3 (lower is better)
Translates to: MREVINTAGSLD*DSFVLGQLSHG
Trigger: ACCATGAGAAAGCTGTCCTAAAACAAATGAGTCTCAGTCAAGGCTTCCTGCAGTGTTAATTACCTCTCTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR CCA 72 bp ACTCTAAAGAATTCTGTTTCCGTAGCCACGGTGGCATaGAACATCTTCTCTCCTTTCATGTCATATGCAAAT +
Preference number: 3 (lower is better)
Translates to: TLKNSVSVATVA*NIFSPFMSYAN
Trigger: ATTTGCATATGACATGAAAGGAGAGAAGATGTTCCATGCCACCGTGGCTACGGAAACAGAATTCTTTAGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR CCA 72 bp AGTTTGTCTCATTTATGCACTCAAACAAGTCTAGGCTaGATTAGGCTATCTCTTGTAGCATCAAGGTGTGTT +
Preference number: 3 (lower is better)
Translates to: SLSHLCTQTSLG*IRLSLVASRCV
Trigger: AACACACCTTGATGCTACAAGAGATAGCCTAATCCAGCCTAGACTTGTTTGAGTGCATAAATGAGACAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR-3UTR CAA 90 bp GTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATTCTTTCCTTCCCAAGTaGCTTTTGTTCAGAATGCTT +
Preference number: 3 (lower is better)
Translates to: VVSQFLALMTFMLLCVVDSFLPK*LLFRML
Trigger: AAGCATTCTGAACAAAAGCAACTTGGGAAGGAAAGA...ATCTACAACACACAGTAACATGAAGGTCATCAAAGCTAGGAACTGAGAAACAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR TCA 72 bp TCTGCTTTGGCTTCCCTCAATGAAGGAAGCTTAAACTaGAATAAACTCTTTCCTTCCCAAGTTGCTTTTGTT +
Preference number: 3 (lower is better)
Translates to: SALASLNEGSLN*NKLFPSQVAFV
Trigger: AACAAAAGCAACTTGGGAAGGAAAGAGTTTATTTCAGTTTAAGCTTCCTTCATTGAGGGAAGCCAAAGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR GCA 72 bp AAATATTTCATGAAACATGTTTATTGCACCTTGGTCTaGAGACCCAGTTTTAAAGCAACCGACAAATGCAAG +
Preference number: 3 (lower is better)
Translates to: KYFMKHVYCTLV*RPSFKATDKCK
Trigger: CTTGCATTTGTCGGTTGCTTTAAAACTGGGTCTGCAGACCAAGGTGCAATAAACATGTTTCATGAAATATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
3UTR TCA 72 bp AAATATGAAGTCAAAGTGAATAACAGGCCACATAAATaGAGATACGGAAGCATAGCAATTACTGTGGTGTTA +
Preference number: 3 (lower is better)
Translates to: KYEVKVNNRPHK*RYGSIAITVVL
Trigger: TAACACCACAGTAATTGCTATGCTTCCGTATCTTCATTTATGTGGCCTGTTATTCACTTTGACTTCATATTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp GAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCAAGTGGAGAACTCCAAGTGCCTaGGCACTGCTATATGCTGTT +
Preference number: 4 (lower is better)
Translates to: EASSALLEGVGYMPQAKWRTPSA*ALLYAV
Trigger: AACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCT...CCACTTGGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp GTCTCTGAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCGGTCCAGAATCCTGCTaGATGATCTTGTTGGAGTTT +
Preference number: 4 (lower is better)
Translates to: VSEASSALLEGVGYMPQAGPESC*MILLEF
Trigger: AAACTCCAACAAGATCATCCAGCAGGATTCTGGACC...GGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTCAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp TCTAAAGAATTCTGTTTCCGTAGCCACGGTGGCATGGAACATCTTCTCTCCTTTTGTTCCTGGAGACACTaGAGGGTCCAGAATCCTGCT +
Preference number: 4 (lower is better)
Translates to: SKEFCFRSHGGMEHLLSFCSWRH*RVQNPA
Trigger: AGCAGGATTCTGGACCCTCCAGTGTCTCCAGGAACA...AAAGGAGAGAAGATGTTCCATGCCACCGTGGCTACGGAAACAGAATTCTTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR TCA 90 bp GAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCAAGTGGTTTCGGGGGACTGAATaGTGCTTTGTAATGTTTCTG +
Preference number: 4 (lower is better)
Translates to: EASSALLEGVGYMPQAKWFRGTE*CFVMFL
Trigger: CAGAAACATTACAAAGCATCATTCAGTCCCCCGAAA...CCACTTGGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp GAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATGTTGCTATATGCTGTTCCTaGAGACACTGGAGGGTCCAG +
Preference number: 4 (lower is better)
Translates to: EAELSGCFSVPSFDDLHVAICCS*RHWRVQ
Trigger: CTGGACCCTCCAGTGTCTCCAGGAACAGCATATAGC...AACATGAAGGTCATCAAAGCTAGGAACTGAGAAACAACCACTCAGTTCTGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR TCA 90 bp TTCCTAGCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATCTCAGCCATGCTCAGAATCCTGCTGGATaGTCTTGTTGGAGTTTCGGG +
Preference number: 4 (lower is better)
Translates to: FLALMTFMLLCVVDLSHAQNPAG*SCWSFG
Trigger: CCCGAAACTCCAACAAGATCATCCAGCAGGATTCTG...AGCATGGCTGAGATCTACAACACACAGTAACATGAAGGTCATCAAAGCTAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR GCA 90 bp TTTATTGCACCTTGGTCTGCAGACCCAGTTTTAAAGCAACCGACAAATGCAAGAGAGGGTCCAGAATCCTaGTGGATGATCTTGTTGGAG +
Preference number: 4 (lower is better)
Translates to: FIAPWSADPVLKQPTNAREGPES*WMILLE
Trigger: CTCCAACAAGATCATCCAGCAGGATTCTGGACCCTC...TCTTGCATTTGTCGGTTGCTTTAAAACTGGGTCTGCAGACCAAGGTGCAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp GCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATCTCAGCCATGCTTTTTCTTGTTCCTGGAGACACTaGAGGGTCCAGAATCCTGCT +
Preference number: 4 (lower is better)
Translates to: ALMTFMLLCVVDLSHAFSCSWRH*RVQNPA
Trigger: AGCAGGATTCTGGACCCTCCAGTGTCTCCAGGAACA...AGAAAAAGCATGGCTGAGATCTACAACACACAGTAACATGAAGGTCATCAAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CCA 90 bp TTCATGAAACATGTTTATTGCACCTTGGTCTGCAGACCCAGTTTTAAAGCAACCTGTTCCTGGAGACACTaGAGGGTCCAGAATCCTGCT +
Preference number: 4 (lower is better)
Translates to: FMKHVYCTLVCRPSFKATCSWRH*RVQNPA
Trigger: AGCAGGATTCTGGACCCTCCAGTGTCTCCAGGAACA...GGTTGCTTTAAAACTGGGTCTGCAGACCAAGGTGCAATAAACATGTTTCATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp AAACCAATTTGGGAATTCAGCCTAAATGTGGGTGACAACATTCTACTGGCAAAGGCTATATGCTGTTCCTaGAGACACTGGAGGGTCCAG +
Preference number: 4 (lower is better)
Translates to: KPIWEFSLNVGDNILLAKAICCS*RHWRVQ
Trigger: CTGGACCCTCCAGTGTCTCCAGGAACAGCATATAGC...CTTTGCCAGTAGAATGTTGTCACCCACATTTAGGCTGAATTCCCAAATTGGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR TCA 90 bp TTCCTAGCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATCTCAGCCATGCTGGCGCTTTTCCTCAGTaGAAGTGGGATATTCATTGG +
Preference number: 4 (lower is better)
Translates to: FLALMTFMLLCVVDLSHAGAFPQ*KWDIHW
Trigger: CCAATGAATATCCCACTTTCACTGAGGAAAAGCGCC...AGCATGGCTGAGATCTACAACACACAGTAACATGAAGGTCATCAAAGCTAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS-3UTR CCA 90 bp CATGTTACTGTGTGTTGTAGATCTCAGCCATGCTTTTTCTTCATCTGGGGTCAGGGTCCAGAATCCTGCTaGATGATCTTGTTGGAGTTT +
Preference number: 4 (lower is better)
Translates to: HVTVCCRSQPCFFFIWGQGPESC*MILLEF
Trigger: AAACTCCAACAAGATCATCCAGCAGGATTCTGGACC...CTGACCCCAGATGAAGAAAAAGCATGGCTGAGATCTACAACACACAGTAACATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CCA 90 bp GAATTAATGCAGTTTCATAAAGGAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCGCTATATGCTGTTCCTaGAGACACTGGAGGGTCCAG +
Preference number: 4 (lower is better)
Translates to: ELMQFHKGSRTEWLFLSSAICCS*RHWRVQ
Trigger: CTGGACCCTCCAGTGTCTCCAGGAACAGCATATAGC...GGAACTGAGAAACAACCACTCAGTTCTGCTTCCTTTATGAAACTGCATTAATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CCA 90 bp GTCTCTGAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCTATAGTTTTATCAGTTaGACCACTCCAGCATCTTTT +
Preference number: 4 (lower is better)
Translates to: VSEASSALLEGVGYMPQAYSFIS*TTPASF
Trigger: AAAAGATGCTGGAGTGGTCCAACTGATAAAACTATA...GGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTCAGAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp GCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATCTCAGCCATGCTTTTTCTAGAACTCCAAGTGCCTaGGCACTGCTATATGCTGTT +
Preference number: 4 (lower is better)
Translates to: ALMTFMLLCVVDLSHAFSRTPSA*ALLYAV
Trigger: AACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCT...AGAAAAAGCATGGCTGAGATCTACAACACACAGTAACATGAAGGTCATCAAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CCA 90 bp TTTGATGACCTTCATGTTACTGTGTGTTGTAGATCTCAGCCATGCTTTTTCTTCGTAGCCACGGTGGCATaGAACATCTTCTCTCCTTTC +
Preference number: 4 (lower is better)
Translates to: FDDLHVTVCCRSQPCFFFVATVA*NIFSPF
Trigger: GAAAGGAGAGAAGATGTTCCATGCCACCGTGGCTAC...GAAGAAAAAGCATGGCTGAGATCTACAACACACAGTAACATGAAGGTCATCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS-3UTR TCA 90 bp AAGGAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATTTTCGGGGGACTGAATaGTGCTTTGTAATGTTTCTG +
Preference number: 4 (lower is better)
Translates to: KEAELSGCFSVPSFDDLHFRGTE*CFVMFL
Trigger: CAGAAACATTACAAAGCATCATTCAGTCCCCCGAAA...ATGAAGGTCATCAAAGCTAGGAACTGAGAAACAACCACTCAGTTCTGCTTCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR TCA 90 bp ATCATCTCCTATCTCATAGCAAATGTAGTACCCCCTTTCTTCTTTCTTACATACCAGAATCCTGCTGGATaGTCTTGTTGGAGTTTCGGG +
Preference number: 4 (lower is better)
Translates to: IISYLIANVVPPFFFLTYQNPAG*SCWSFG
Trigger: CCCGAAACTCCAACAAGATCATCCAGCAGGATTCTG...GTATGTAAGAAAGAAGAAAGGGGGTACTACATTTGCTATGAGATAGGAGATGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR GCA 90 bp AAGGACCTTATTTGGTATGAACTTCTCCTTCAGGACAATATCAAACACCTTTACGAGGGTCCAGAATCCTaGTGGATGATCTTGTTGGAG +
Preference number: 4 (lower is better)
Translates to: KDLIWYELLLQDNIKHLYEGPES*WMILLE
Trigger: CTCCAACAAGATCATCCAGCAGGATTCTGGACCCTC...GTAAAGGTGTTTGATATTGTCCTGAAGGAGAAGTTCATACCAAATAAGGTCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR CCA 90 bp GTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATAGAACTCCAAGTGCCTaGGCACTGCTATATGCTGTT +
Preference number: 4 (lower is better)
Translates to: VVSQFLALMTFMLLCVVDRTPSA*ALLYAV
Trigger: AACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCT...ATCTACAACACACAGTAACATGAAGGTCATCAAAGCTAGGAACTGAGAAACAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CCA 90 bp AACATGTTTATTGCACCTTGGTCTGCAGACCCAGTTTTAAAGCAACCGACAAATTCAGTCTCTGTCTCTTaGCTGGTGTTGCTAGAAGAA +
Preference number: 4 (lower is better)
Translates to: NMFIAPWSADPVLKQPTNSVSVS*LVLLEE
Trigger: TTCTTCTAGCAACACCAGCCAAGAGACAGAGACTGA...ATTTGTCGGTTGCTTTAAAACTGGGTCTGCAGACCAAGGTGCAATAAACATGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
3UTR CAA 72 bp TTAATCCCATTTTCCAATGTCAGTTTACTGAGGCCTTaGCCTACACAAATTTCCCAAGGGGTCAGAAACACT +
Preference number: 4 (lower is better)
Translates to: LIPFSNVSLLRP*PTQISQGVRNT
Trigger: AGTGTTTCTGACCCCTTGGGAAATTTGTGTAGGCAAAGGCCTCAGTAAACTGACATTGGAAAATGGGATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp GTAACCATTTTCCTCAGAAGGTTCTTTGGGTACATTTTTCAGTCTCTGTCTCTTGGTCCAGAATCCTGCTaGATGATCTTGTTGGAGTTT +
Preference number: 4 (lower is better)
Translates to: VTIFLRRFFGYIFQSLSLGPESC*MILLEF
Trigger: AAACTCCAACAAGATCATCCAGCAGGATTCTGGACC...AAGAGACAGAGACTGAAAAATGTACCCAAAGAACCTTCTGAGGAAAATGGTTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR CAA 72 bp CCAAGGGGTCAGAAACACTTATATCTTGTACTTATCTaGTTATGGCTGCTATTTCTACCTTTCCTTTGCTCC +
Preference number: 4 (lower is better)
Translates to: PRGQKHLYLVLI*LWLLFLPFLCS
Trigger: GGAGCAAAGGAAAGGTAGAAATAGCAGCCATAACAAGATAAGTACAAGATATAAGTGTTTCTGACCCCTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR CAA 72 bp GGTGTTAACATTATGGACTTCAAGAGAAGTAGGAGGTaGACTGACCAACTTGGGTACCATAGGATTTTGTTT +
Preference number: 4 (lower is better)
Translates to: GVNIMDFKRSRR*TDQLGYHRILF
Trigger: AAACAAAATCCTATGGTACCCAAGTTGGTCAGTCAACCTCCTACTTCTCTTGAAGTCCATAATGTTAACACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CCA 90 bp AAGGAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATTATAGTTTTATCAGTTaGACCACTCCAGCATCTTTT +
Preference number: 4 (lower is better)
Translates to: KEAELSGCFSVPSFDDLHYSFIS*TTPASF
Trigger: AAAAGATGCTGGAGTGGTCCAACTGATAAAACTATA...ATGAAGGTCATCAAAGCTAGGAACTGAGAAACAACCACTCAGTTCTGCTTCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR TCA 90 bp GAACTTCTCCTTCAGGACAATATCAAACACCTTTACTCTAAAGAATTCTGTTTCTTTCGGGGGACTGAATaGTGCTTTGTAATGTTTCTG +
Preference number: 4 (lower is better)
Translates to: ELLLQDNIKHLYSKEFCFFRGTE*CFVMFL
Trigger: CAGAAACATTACAAAGCATCATTCAGTCCCCCGAAA...GAAACAGAATTCTTTAGAGTAAAGGTGTTTGATATTGTCCTGAAGGAGAAGTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
3UTR CAA 72 bp TTCTCCATGATTGGTCATCATTGCCCATTGTCGTTATaGATACTGATTATAAAGGTAACAGGATATAGATCC +
Preference number: 4 (lower is better)
Translates to: FSMIGHHCPLSL*ILIIKVTGYRS
Trigger: GGATCTATATCCTGTTACCTTTATAATCAGTATCAATAACGACAATGGGCAATGATGACCAATCATGGAGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
3UTR CAA 72 bp ACACAAATTTCCCAAGGGGTCAGAAACACTTATATCTaGTACTTATCTTGTTATGGCTGCTATTTCTACCTT +
Preference number: 4 (lower is better)
Translates to: TQISQGVRNTYI*YLSCYGCYFYL
Trigger: AAGGTAGAAATAGCAGCCATAACAAGATAAGTACAAGATATAAGTGTTTCTGACCCCTTGGGAAATTTGTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS CCA 90 bp AGTCTCTGTCTCTTGGCTGGTGTTGCTAGAAGAACTCCAAGTGCCTaGGCACTGCTATATGCTGTTCCTGGAGACACTGGAGGGTCCAGA +
Preference number: 5 (lower is better)
Translates to: SLCLLAGVARRTPSA*ALLYAVPGDTGGSR
Trigger: TCTGGACCCTCCAGTGTCTCCAGGAACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGAGACAGAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS CCA 90 bp GCTTTGATGACCTTGGCTGGTGTTGCTAGAAGAACTCCAAGTGCCTaGGCACTGCTATATGCTGTTCCTGGAGACACTGGAGGGTCCAGA +
Preference number: 5 (lower is better)
Translates to: ALMTLAGVARRTPSA*ALLYAVPGDTGGSR
Trigger: TCTGGACCCTCCAGTGTCTCCAGGAACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGGTCATCAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS CCA 90 bp CTCCCTGATTCTGGTTCTGCATCTTCATTTGTGGTGGACATAGGTTaGGAAGTACTGGGTTCTTCTTGCCTTTGTCTTTTTGCTGCGGTT +
Preference number: 5 (lower is better)
Translates to: LPDSGSASSFVVDIG*EVLGSSCLCLFAAV
Trigger: AACCGCAGCAAAAAGACAAAGGCAAGAAGAACCCAGTACTTCCCAACCTATGTCCACCACAAATGAAGATGCAGAACCAGAATCAGGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp GAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCAAGTGGGCATCTTTTGGGAACTaGTCTTCCATCAAATCAGCA +
Preference number: 5 (lower is better)
Translates to: EASSALLEGVGYMPQAKWASFGN*SSIKSA
Trigger: TGCTGATTTGATGGAAGACAAGTTCCCAAAAGATGC...CCACTTGGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS GCA 90 bp TCTTCATTTGTGGTGGACATAGGTTGGGAAGTACTGGGTTCTTCTTaGCTTTGTCTTTTTGCTGCGGTTTTCCGTTTCCCTTTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: SSFVVDIGWEVLGSS*LCLFAAVFRFPFPF
Trigger: GAAAGGGAAAGGGAAACGGAAAACCGCAGCAAAAAGACAAAGGCAAGAAGAACCCAGTACTTCCCAACCTATGTCCACCACAAATGAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp GTCTCTGAAGCTTCCAGTGCATTGTTAGAAGGGGTTGGTTATATGCCCCAAGCCTGCTGGATGCTATTGTaGGAGAAATTTGAATGGCTT +
Preference number: 5 (lower is better)
Translates to: VSEASSALLEGVGYMPQACWMLL*EKFEWL
Trigger: AAGCCATTCAAATTTCTCCAACAATAGCATCCAGCA...GGCTTGGGGCATATAACCAACCCCTTCTAACAATGCACTGGAAGCTTCAGAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp GAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATGTTCTTGCCTTTGTCTTTTaGCTGCGGTTTTCCGTTTCC +
Preference number: 5 (lower is better)
Translates to: EAELSGCFSVPSFDDLHVLAFVF*LRFSVS
Trigger: GGAAACGGAAAACCGCAGCAAAAAGACAAAGGCAAG...AACATGAAGGTCATCAAAGCTAGGAACTGAGAAACAACCACTCAGTTCTGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp TCTAAAGAATTCTGTTTCCGTAGCCACGGTGGCATGGAACATCTTCTCTCCTTTGGGTTCTTCTTGCCTTaGTCTTTTTGCTGCGGTTTT +
Preference number: 5 (lower is better)
Translates to: SKEFCFRSHGGMEHLLSFGFFLP*SFCCGF
Trigger: AAAACCGCAGCAAAAAGACAAAGGCAAGAAGAACCC...AAAGGAGAGAAGATGTTCCATGCCACCGTGGCTACGGAAACAGAATTCTTTAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp CTGGTAACCATTTTCCTCAGAAGGTTCTTTGGGTACATTTTTCAGTCTCTGTCTCCACTCCAGCATCTTTaGGGAACTTGTCTTCCATCA +
Preference number: 5 (lower is better)
Translates to: LVTIFLRRFFGYIFQSLSPLQHL*GTCLPS
Trigger: TGATGGAAGACAAGTTCCCAAAAGATGCTGGAGTGG...AGACAGAGACTGAAAAATGTACCCAAAGAACCTTCTGAGGAAAATGGTTACCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp AAACCAATTTGGGAATTCAGCCTAAATGTGGGTGACAACATTCTACTGGCAAAGCTTGCCTTTGTCTTTTaGCTGCGGTTTTCCGTTTCC +
Preference number: 5 (lower is better)
Translates to: KPIWEFSLNVGDNILLAKLAFVF*LRFSVS
Trigger: GGAAACGGAAAACCGCAGCAAAAAGACAAAGGCAAG...CTTTGCCAGTAGAATGTTGTCACCCACATTTAGGCTGAATTCCCAAATTGGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp TTCCTAGCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATCTCAGCCATGCTGGGTTCTTCTTGCCTTaGTCTTTTTGCTGCGGTTTT +
Preference number: 5 (lower is better)
Translates to: FLALMTFMLLCVVDLSHAGFFLP*SFCCGF
Trigger: AAAACCGCAGCAAAAAGACAAAGGCAAGAAGAACCC...AGCATGGCTGAGATCTACAACACACAGTAACATGAAGGTCATCAAAGCTAGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp CCCAGTTTTAAAGCAACCGACAAATGCAAGAAACTTGTGAAGTACCTGAAGTTTCCACTCCAGCATCTTTaGGGAACTTGTCTTCCATCA +
Preference number: 5 (lower is better)
Translates to: PSFKATDKCKKLVKYLKFPLQHL*GTCLPS
Trigger: TGATGGAAGACAAGTTCCCAAAAGATGCTGGAGTGG...AAACTTCAGGTACTTCACAAGTTTCTTGCATTTGTCGGTTGCTTTAAAACTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp GAATTAATGCAGTTTCATAAAGGAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCCTTGCCTTTGTCTTTTaGCTGCGGTTTTCCGTTTCC +
Preference number: 5 (lower is better)
Translates to: ELMQFHKGSRTEWLFLSSLAFVF*LRFSVS
Trigger: GGAAACGGAAAACCGCAGCAAAAAGACAAAGGCAAG...GGAACTGAGAAACAACCACTCAGTTCTGCTTCCTTTATGAAACTGCATTAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp TTCATGAAACATGTTTATTGCACCTTGGTCTGCAGACCCAGTTTTAAAGCAACCAGTACTGGGTTCTTCTaGCCTTTGTCTTTTTGCTGC +
Preference number: 5 (lower is better)
Translates to: FMKHVYCTLVCRPSFKATSTGFF*PLSFCC
Trigger: GCAGCAAAAAGACAAAGGCAAGAAGAACCCAGTACT...GGTTGCTTTAAAACTGGGTCTGCAGACCAAGGTGCAATAAACATGTTTCATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp AACATGTTTATTGCACCTTGGTCTGCAGACCCAGTTTTAAAGCAACCGACAAATAGTACTGGGTTCTTCTaGCCTTTGTCTTTTTGCTGC +
Preference number: 5 (lower is better)
Translates to: NMFIAPWSADPVLKQPTNSTGFF*PLSFCC
Trigger: GCAGCAAAAAGACAAAGGCAAGAAGAACCCAGTACT...ATTTGTCGGTTGCTTTAAAACTGGGTCTGCAGACCAAGGTGCAATAAACATGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp TTCATAAAGGAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCTAGCTTTGATGACTCCTTCGGGAAGCAGTaGGTAAAGATAACTGAGCAA +
Preference number: 5 (lower is better)
Translates to: FIKEAELSGCFSVPSFDDSFGKQ*VKITEQ
Trigger: TTGCTCAGTTATCTTTACCAACTGCTTCCCGAAGGA...GTCATCAAAGCTAGGAACTGAGAAACAACCACTCAGTTCTGCTTCCTTTATGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp TCTAAAGAATTCTGTTTCCGTAGCCACGGTGGCATGGAACATCTTCTCTCCTTTTATTGTTGGAGAAATTaGAATGGCTTGGTTCCTTCG +
Preference number: 5 (lower is better)
Translates to: SKEFCFRSHGGMEHLLSFYCWRN*NGLVPS
Trigger: CGAAGGAACCAAGCCATTCAAATTTCTCCAACAATA...AAAGGAGAGAAGATGTTCCATGCCACCGTGGCTACGGAAACAGAATTCTTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp GTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATTTCAGTCTCTGTCTCTaGGCTGGTGTTGCTAGAAGA +
Preference number: 5 (lower is better)
Translates to: VVSQFLALMTFMLLCVVDFSLCL*AGVARR
Trigger: TCTTCTAGCAACACCAGCCAAGAGACAGAGACTGAA...ATCTACAACACACAGTAACATGAAGGTCATCAAAGCTAGGAACTGAGAAACAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS-3UTR CAA 90 bp GAACTGAGTGGTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATGTTACTGTGTCCTCAGAAGGTTCTTaGGGTACATTTTTCAGTCTC +
Preference number: 5 (lower is better)
Translates to: ELSGCFSVPSFDDLHVTVSSEGS*GTFFSL
Trigger: GAGACTGAAAAATGTACCCAAAGAACCTTCTGAGGA...CACAGTAACATGAAGGTCATCAAAGCTAGGAACTGAGAAACAACCACTCAGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS-3UTR CAA 90 bp CCCAGTTTTAAAGCAACCGACAAATGCAAGAAACTTGTGAAGTACCTGAAGTTTGGGTTCTTCTTGCCTTaGTCTTTTTGCTGCGGTTTT +
Preference number: 5 (lower is better)
Translates to: PSFKATDKCKKLVKYLKFGFFLP*SFCCGF
Trigger: AAAACCGCAGCAAAAAGACAAAGGCAAGAAGAACCC...AAACTTCAGGTACTTCACAAGTTTCTTGCATTTGTCGGTTGCTTTAAAACTGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp GAATTAATGCAGTTTCATAAAGGAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCAGTACTGGGTTCTTCTaGCCTTTGTCTTTTTGCTGC +
Preference number: 5 (lower is better)
Translates to: ELMQFHKGSRTEWLFLSSSTGFF*PLSFCC
Trigger: GCAGCAAAAAGACAAAGGCAAGAAGAACCCAGTACT...GGAACTGAGAAACAACCACTCAGTTCTGCTTCCTTTATGAAACTGCATTAATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp CCCAGTTTTAAAGCAACCGACAAATGCAAGAAACTTGTGAAGTACCTGAAGTTTTCCTTCGGGAAGCAGTaGGTAAAGATAACTGAGCAA +
Preference number: 5 (lower is better)
Translates to: PSFKATDKCKKLVKYLKFSFGKQ*VKITEQ
Trigger: TTGCTCAGTTATCTTTACCAACTGCTTCCCGAAGGA...AAACTTCAGGTACTTCACAAGTTTCTTGCATTTGTCGGTTGCTTTAAAACTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp CCCAGTTTTAAAGCAACCGACAAATGCAAGAAACTTGTGAAGTACCTGAAGTTTGCATCTTTTGGGAACTaGTCTTCCATCAAATCAGCA +
Preference number: 5 (lower is better)
Translates to: PSFKATDKCKKLVKYLKFASFGN*SSIKSA
Trigger: TGCTGATTTGATGGAAGACAAGTTCCCAAAAGATGC...AAACTTCAGGTACTTCACAAGTTTCTTGCATTTGTCGGTTGCTTTAAAACTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp GATGGTAAGGACCTTATTTGGTATGAACTTCTCCTTCAGGACAATATCAAACACGCATCTTTTGGGAACTaGTCTTCCATCAAATCAGCA +
Preference number: 5 (lower is better)
Translates to: DGKDLIWYELLLQDNIKHASFGN*SSIKSA
Trigger: TGCTGATTTGATGGAAGACAAGTTCCCAAAAGATGC...GTGTTTGATATTGTCCTGAAGGAGAAGTTCATACCAAATAAGGTCCTTACCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp AGGACCTTATTTGGTATGAACTTCTCCTTCAGGACAATATCAAACACCTTTACTTCCTTCGGGAAGCAGTaGGTAAAGATAACTGAGCAA +
Preference number: 5 (lower is better)
Translates to: RTLFGMNFSFRTISNTFTSFGKQ*VKITEQ
Trigger: TTGCTCAGTTATCTTTACCAACTGCTTCCCGAAGGA...AGTAAAGGTGTTTGATATTGTCCTGAAGGAGAAGTTCATACCAAATAAGGTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp TTCATAAAGGAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCTAGCTTTGATGACTATTGTTGGAGAAATTaGAATGGCTTGGTTCCTTCG +
Preference number: 5 (lower is better)
Translates to: FIKEAELSGCFSVPSFDDYCWRN*NGLVPS
Trigger: CGAAGGAACCAAGCCATTCAAATTTCTCCAACAATA...GTCATCAAAGCTAGGAACTGAGAAACAACCACTCAGTTCTGCTTCCTTTATGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp AACATGTTTATTGCACCTTGGTCTGCAGACCCAGTTTTAAAGCAACCGACAAATTATTGTTGGAGAAATTaGAATGGCTTGGTTCCTTCG +
Preference number: 5 (lower is better)
Translates to: NMFIAPWSADPVLKQPTNYCWRN*NGLVPS
Trigger: CGAAGGAACCAAGCCATTCAAATTTCTCCAACAATA...ATTTGTCGGTTGCTTTAAAACTGGGTCTGCAGACCAAGGTGCAATAAACATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp GGTTGTTTCTCAGTTCCTAGCTTTGATGACCTTCATGTTACTGTGTGTTGTAGATGCTGGATGCTATTGTaGGAGAAATTTGAATGGCTT +
Preference number: 5 (lower is better)
Translates to: GCFSVPSFDDLHVTVCCRCWMLL*EKFEWL
Trigger: AAGCCATTCAAATTTCTCCAACAATAGCATCCAGCA...TCTACAACACACAGTAACATGAAGGTCATCAAAGCTAGGAACTGAGAAACAACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp GAATTAATGCAGTTTCATAAAGGAAGCAGAACTGAGTGGTTGTTTCTCAGTTCCCACTGCTGGATGCTATaGTTGGAGAAATTTGAATGG +
Preference number: 5 (lower is better)
Translates to: ELMQFHKGSRTEWLFLSSHCWML*LEKFEW
Trigger: CCATTCAAATTTCTCCAACAATAGCATCCAGCAGTG...GGAACTGAGAAACAACCACTCAGTTCTGCTTCCTTTATGAAACTGCATTAATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp CTTCAGGACAATATCAAACACCTTTACTCTAAAGAATTCTGTTTCCGTAGCCACCACTGCTGGATGCTATaGTTGGAGAAATTTGAATGG +
Preference number: 5 (lower is better)
Translates to: LQDNIKHLYSKEFCFRSHHCWML*LEKFEW
Trigger: CCATTCAAATTTCTCCAACAATAGCATCCAGCAGTG...GTGGCTACGGAAACAGAATTCTTTAGAGTAAAGGTGTTTGATATTGTCCTGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS-3UTR CAA 90 bp CCCAGTTTTAAAGCAACCGACAAATGCAAGAAACTTGTGAAGTACCTGAAGTTTCACTGCTGGATGCTATaGTTGGAGAAATTTGAATGG +
Preference number: 5 (lower is better)
Translates to: PSFKATDKCKKLVKYLKFHCWML*LEKFEW
Trigger: CCATTCAAATTTCTCCAACAATAGCATCCAGCAGTG...AAACTTCAGGTACTTCACAAGTTTCTTGCATTTGTCGGTTGCTTTAAAACTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000139092.8
CDS-3UTR CAA 90 bp TTTGATGACCTTCATGTTACTGTGTGTTGTAGATCTCAGCCATGCTTTTTCTTCTGCTGGATGCTATTGTaGGAGAAATTTGAATGGCTT +
Preference number: 5 (lower is better)
Translates to: FDDLHVTVCCRSQPCFFFCWMLL*EKFEWL
Trigger: AAGCCATTCAAATTTCTCCAACAATAGCATCCAGCA...GAAGAAAAAGCATGGCTGAGATCTACAACACACAGTAACATGAAGGTCATCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
CDS GCA 72 bp CTGGTGTTGCTAGAAGAACTCCAAGTGCCTGGGCACTaGTATATGCTGTTCCTGGAGACACTGGAGGGTCCA +
Preference number: 6 (lower is better)
Translates to: LVLLEELQVPGH*YMLFLETLEGP
Trigger: TGGACCCTCCAGTGTCTCCAGGAACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCTTCTAGCAACACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS TCA 72 bp TCCTGGAGACACTGGAGGGTCCAGAATCCTGCTGGATaGTCTTGTTGGAGTTTCGGGGGACTGAATGATGCT +
Preference number: 6 (lower is better)
Translates to: SWRHWRVQNPAG*SCWSFGGLNDA
Trigger: AGCATCATTCAGTCCCCCGAAACTCCAACAAGATCATCCAGCAGGATTCTGGACCCTCCAGTGTCTCCAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS GCA 72 bp ATGCTGTTCCTGGAGACACTGGAGGGTCCAGAATCCTaGTGGATGATCTTGTTGGAGTTTCGGGGGACTGAA +
Preference number: 6 (lower is better)
Translates to: MLFLETLEGPES*WMILLEFRGTE
Trigger: TTCAGTCCCCCGAAACTCCAACAAGATCATCCAGCAGGATTCTGGACCCTCCAGTGTCTCCAGGAACAGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS CCA 72 bp CACTTGGCTGGTGTTGCTAGAAGAACTCCAAGTGCCTaGGCACTGCTATATGCTGTTCCTGGAGACACTGGA +
Preference number: 6 (lower is better)
Translates to: HLAGVARRTPSA*ALLYAVPGDTG
Trigger: TCCAGTGTCTCCAGGAACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097463.11
CDS CCA 72 bp CTCTTGGCTGGTGTTGCTAGAAGAACTCCAAGTGCCTaGGCACTGCTATATGCTGTTCCTGGAGACACTGGA +
Preference number: 6 (lower is better)
Translates to: LLAGVARRTPSA*ALLYAVPGDTG
Trigger: TCCAGTGTCTCCAGGAACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS CCA 72 bp ACCTTGGCTGGTGTTGCTAGAAGAACTCCAAGTGCCTaGGCACTGCTATATGCTGTTCCTGGAGACACTGGA +
Preference number: 6 (lower is better)
Translates to: TLAGVARRTPSA*ALLYAVPGDTG
Trigger: TCCAGTGTCTCCAGGAACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139092.8
CDS CAA 72 bp TGGGTACATTTTTCAGTCTCTGTCTCTTGGCTGGTGTaGCTAGAAGAACTCCAAGTGCCTGGGCACTGCTAT +
Preference number: 6 (lower is better)
Translates to: WVHFSVSVSWLV*LEELQVPGHCY
Trigger: ATAGCAGTGCCCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGAGACAGAGACTGAAAAATGTACCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS CAA 90 bp TTTCTGAAGATCTGCTGCTGGTCTGACCACTGCTGGATGCTATTGTaGGAGAAATTTGAATGGCTTGGTTCCTTCGGGAAGCAGTTGGTA +
Preference number: 6 (lower is better)
Translates to: FLKICCWSDHCWMLL*EKFEWLGSFGKQLV
Trigger: TACCAACTGCTTCCCGAAGGAACCAAGCCATTCAAATTTCTCCAACAATAGCATCCAGCAGTGGTCAGACCAGCAGCAGATCTTCAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS CAA 90 bp ATGTTTCTGAAGATCTGCTGCTGGTCTGACCACTGCTGGATGCTATaGTTGGAGAAATTTGAATGGCTTGGTTCCTTCGGGAAGCAGTTG +
Preference number: 6 (lower is better)
Translates to: MFLKICCWSDHCWML*LEKFEWLGSFGKQL
Trigger: CAACTGCTTCCCGAAGGAACCAAGCCATTCAAATTTCTCCAACAATAGCATCCAGCAGTGGTCAGACCAGCAGCAGATCTTCAGAAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS CAA 90 bp AAGGTTCTTTGGGTACATTTTTCAGTCTCTGTCTCTTGGCTGGTGTaGCTAGAAGAACTCCAAGTGCCTGGGCACTGCTATATGCTGTTC +
Preference number: 6 (lower is better)
Translates to: KVLWVHFSVSVSWLV*LEELQVPGHCYMLF
Trigger: GAACAGCATATAGCAGTGCCCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGAGACAGAGACTGAAAAATGTACCCAAAGAACCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS CCA 72 bp AAGGTTCTTTGGGTACATTTTTCAGTCTCTGTCTCTTaGCTGGTGTTGCTAGAAGAACTCCAAGTGCCTGGG +
Preference number: 6 (lower is better)
Translates to: KVLWVHFSVSVS*LVLLEELQVPG
Trigger: CCCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGAGACAGAGACTGAAAAATGTACCCAAAGAACCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS CAA 72 bp GAAGGTTCTTTGGGTACATTTTTCAGTCTCTGTCTCTaGGCTGGTGTTGCTAGAAGAACTCCAAGTGCCTGG +
Preference number: 6 (lower is better)
Translates to: EGSLGTFFSLCL*AGVARRTPSAW
Trigger: CCAGGCACTTGGAGTTCTTCTAGCAACACCAGCCAAGAGACAGAGACTGAAAAATGTACCCAAAGAACCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS CAA 90 bp CTATTGTTGGAGAAATTTGAATGGCTTGGTTCCTTCGGGAAGCAGTaGGTAAAGATAACTGAGCAACCTGTGTGTCAGGTGTACTCCTCC +
Preference number: 6 (lower is better)
Translates to: LLLEKFEWLGSFGKQ*VKITEQPVCQVYSS
Trigger: GGAGGAGTACACCTGACACACAGGTTGCTCAGTTATCTTTACCAACTGCTTCCCGAAGGAACCAAGCCATTCAAATTTCTCCAACAATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS CAA 90 bp ATTTGTGGTGGACATAGGTTGGGAAGTACTGGGTTCTTCTTGCCTTaGTCTTTTTGCTGCGGTTTTCCGTTTCCCTTTCCCTTTCCTTTT +
Preference number: 6 (lower is better)
Translates to: ICGGHRLGSTGFFLP*SFCCGFPFPFPFPF
Trigger: AAAAGGAAAGGGAAAGGGAAACGGAAAACCGCAGCAAAAAGACAAAGGCAAGAAGAACCCAGTACTTCCCAACCTATGTCCACCACAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS CAA 90 bp ATCTTCATTTGTGGTGGACATAGGTTGGGAAGTACTGGGTTCTTCTaGCCTTTGTCTTTTTGCTGCGGTTTTCCGTTTCCCTTTCCCTTT +
Preference number: 6 (lower is better)
Translates to: IFICGGHRLGSTGFF*PLSFCCGFPFPFPF
Trigger: AAAGGGAAAGGGAAACGGAAAACCGCAGCAAAAAGACAAAGGCAAGAAGAACCCAGTACTTCCCAACCTATGTCCACCACAAATGAAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS TCA 72 bp ATCCTGCTGGATGATCTTGTTGGAGTTTCGGGGGACTaGATGATGCTTTGTAATGTTTCTGAAGATCTGCTG +
Preference number: 6 (lower is better)
Translates to: ILLDDLVGVSGD*MMLCNVSEDLL
Trigger: CAGCAGATCTTCAGAAACATTACAAAGCATCATTCAGTCCCCCGAAACTCCAACAAGATCATCCAGCAGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8
CDS CCA 72 bp AACCTTGCTGGTAACCATTTTCCTCAGAAGGTTCTTTaGGTACATTTTTCAGTCTCTGTCTCTTGGCTGGTG +
Preference number: 6 (lower is better)
Translates to: NLAGNHFPQKVL*VHFSVSVSWLV
Trigger: CACCAGCCAAGAGACAGAGACTGAAAAATGTACCCAAAGAACCTTCTGAGGAAAATGGTTACCAGCAAGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090406.6
CDS GCA 72 bp TTGAGTTTATTAGCAATGTCTCCAAGTCCTGGAATCTaGTTATATAGTTTTATCAGTTGGACCACTCCAGCA +
Preference number: 6 (lower is better)
Translates to: LSLLAMSPSPGI*LYSFISWTTPA
Trigger: TGCTGGAGTGGTCCAACTGATAAAACTATATAAGCAGATTCCAGGACTTGGAGACATTGCTAATAAACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000090406.6
ENSMUST00000097463.11
ENSMUST00000139092.8