Pregenerated sensors for IFI211 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026536

Ensembl transcript IDs: ENSMUST00000009340.10

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGGTTCTTAGCCGAAAGAATGTTAGATGAAGCCGAAGATGAGCTGTaGAGTATTGGTGACTGGCACATGGCTGTGGGTTCTTCACAACAG	+
Preference number: 5 (lower is better) Translates to: WFLAERMLDEAEDEL*SIGDWHMAVGSSQQ Trigger: CTGTTGTGAAGAACCCACAGCCATGTGCCAGTCACCAATACTCCACAGCTCATCTTCGGCTTCATCTAACATTCTTTCGGCTAAGAACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009340.10
CDS CCA 72 bp	TCCCCGCCTGAGCTGTGGAAGTCCCCGCCTGAGCTGTaGAAGTCTCTTCCTGGGTTGCAGAAGTCTCGCCTC	+
Preference number: 6 (lower is better) Translates to: SPPELWKSPPEL*KSLPGLQKSRL Trigger: GAGGCGAGACTTCTGCAACCCAGGAAGAGACTTCCACAGCTCAGGCGGGGACTTCCACAGCTCAGGCGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009340.10
CDS CCA 72 bp	CCGAAGATGAGCTGTGGAGTATTGGTGACTGGCACATaGCTGTGGGTTCTTCACAACAGGGAGGCTGATCTG	+
Preference number: 6 (lower is better) Translates to: PKMSCGVLVTGT*LWVLHNREADL Trigger: CAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCATGTGCCAGTCACCAATACTCCACAGCTCATCTTCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009340.10
CDS CCA 72 bp	GATGAAGCCGAAGATGAGCTGTGGAGTATTGGTGACTaGCACATGGCTGTGGGTTCTTCACAACAGGGAGGC	+
Preference number: 6 (lower is better) Translates to: DEAEDELWSIGD*HMAVGSSQQGG Trigger: GCCTCCCTGTTGTGAAGAACCCACAGCCATGTGCCAGTCACCAATACTCCACAGCTCATCTTCGGCTTCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009340.10
CDS CCA 72 bp	CATGGCTGTGGGTTCTTCACAACAGGGAGGCTGATCTaGTTCCTTAGCCGCCTTGCTCTTTTTCACTCCAGT	+
Preference number: 6 (lower is better) Translates to: HGCGFFTTGRLI*FLSRLALFHSS Trigger: ACTGGAGTGAAAAAGAGCAAGGCGGCTAAGGAACCAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009340.10
CDS CCA 72 bp	GAGTGGAGAACAGCACCTCTGGGAATGTTCTGGTTCTaGGGTTGTGATTTTTGGTTCTTAGCCGAAAGAATG	+
Preference number: 6 (lower is better) Translates to: EWRTAPLGMFWF*GCDFWFLAERM Trigger: CATTCTTTCGGCTAAGAACCAAAAATCACAACCCCAGAACCAGAACATTCCCAGAGGTGCTGTTCTCCACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009340.10
CDS CAA 72 bp	CTAAGAGCTGGTACTTCTTCACAAAACTCAATCAGTTaGCCCAATCCAGAATCAGCTGGAAATTTCTCTTCC	+
Preference number: 6 (lower is better) Translates to: LRAGTSSQNSIS*PNPESAGNFSS Trigger: GGAAGAGAAATTTCCAGCTGATTCTGGATTGGGCAAACTGATTGAGTTTTGTGAAGAAGTACCAGCTCTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009340.10
CDS CAA 90 bp	GCTCGTTTTCTAAGAGCTGGTACTTCTTCACAAAACTCAATCAGTTaGCCCAATCCAGAATCAGCTGGAAATTTCTCTTCCATCATGTTA	+
Preference number: 6 (lower is better) Translates to: ARFLRAGTSSQNSIS*PNPESAGNFSSIML Trigger: TAACATGATGGAAGAGAAATTTCCAGCTGATTCTGGATTGGGCAAACTGATTGAGTTTTGTGAAGAAGTACCAGCTCTTAGAAAACGAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009340.10

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu