Pregenerated sensors for IFI202B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026535Ensembl transcript IDs: ENSMUST00000000266.9
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTCACAGTTGACACTGGTCAGTTGTCCAGATACCACCACTTTCATTaGTCCTGTATCATCCCAAATTCCATAGCATATACAATTATTTCC | + |
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Preference number: 5 (lower is better) Translates to: LTVDTGQLSRYHHFH*SCIIPNSIAYTIIS Trigger: GGAAATAATTGTATATGCTATGGAATTTGGGATGATACAGGAGCAATGAAAGTGGTGGTATCTGGACAACTGACCAGTGTCAACTGTGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS CCA 90 bp | GTTTCTTTTGCACTTCTGATAATATTTTTGGGCACTTCAATAATTTaGTTAGGAGCAGCCTCTGACACAGTGGCAGTTTCATTGATCTCT | + |
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Preference number: 5 (lower is better) Translates to: VSFALLIIFLGTSII*LGAASDTVAVSLIS Trigger: AGAGATCAATGAAACTGCCACTGTGTCAGAGGCTGCTCCTAACCAAATTATTGAAGTGCCCAAAAATATTATCAGAAGTGCAAAAGAAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS GCA 90 bp | ATGAAACATGTTCTCTTTTCCCTCTTTATAATTAAATGGTTCTGTTaGAGTGAGTACCATCACTGTCATGGGTTTCTCATGAAGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: MKHVLFSLFIIKWFC*SEYHHCHGFLMKNS Trigger: GCTGTTCTTCATGAGAAACCCATGACAGTGATGGTACTCACTGCAACAGAACCATTTAATTATAAAGAGGGAAAAGAGAACATGTTTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS CAA 72 bp | TGGTTAGGAGCAGCCTCTGACACAGTGGCAGTTTCATaGATCTCTAGGATGCCACTGCTGTTGAAGTATTTG | + |
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Preference number: 6 (lower is better) Translates to: WLGAASDTVAVS*ISRMPLLLKYL Trigger: CAAATACTTCAACAGCAGTGGCATCCTAGAGATCAATGAAACTGCCACTGTGTCAGAGGCTGCTCCTAACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS CCA 72 bp | GCACTTCTGATAATATTTTTGGGCACTTCAATAATTTaGTTAGGAGCAGCCTCTGACACAGTGGCAGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: ALLIIFLGTSII*LGAASDTVAVS Trigger: TGAAACTGCCACTGTGTCAGAGGCTGCTCCTAACCAAATTATTGAAGTGCCCAAAAATATTATCAGAAGTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS CAA 72 bp | GGCTCTTCACCTCAGACACGCTGGAATATTCATGTATaGCCAGAGACCCATACATACCAAAATAATCTGATA | + |
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Preference number: 6 (lower is better) Translates to: GSSPQTRWNIHV*PETHTYQNNLI Trigger: TATCAGATTATTTTGGTATGTATGGGTCTCTGGCAATACATGAATATTCCAGCGTGTCTGAGGTGAAGAGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS CAA 72 bp | AATTGTATTACCAATCTCACAGTTGACACTGGTCAGTaGTCCAGATACCACCACTTTCATTGCTCCTGTATC | + |
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Preference number: 6 (lower is better) Translates to: NCITNLTVDTGQ*SRYHHFHCSCI Trigger: GATACAGGAGCAATGAAAGTGGTGGTATCTGGACAACTGACCAGTGTCAACTGTGAGATTGGTAATACAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS CAA 90 bp | GACAAGTCTAATTGTATTACCAATCTCACAGTTGACACTGGTCAGTaGTCCAGATACCACCACTTTCATTGCTCCTGTATCATCCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: DKSNCITNLTVDTGQ*SRYHHFHCSCIIPN Trigger: ATTTGGGATGATACAGGAGCAATGAAAGTGGTGGTATCTGGACAACTGACCAGTGTCAACTGTGAGATTGGTAATACAATTAGACTTGTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS CAA 90 bp | GTCAATTCAAAGCAGACAAGTCTAATTGTATTACCAATCTCACAGTaGACACTGGTCAGTTGTCCAGATACCACCACTTTCATTGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: VNSKQTSLIVLPISQ*TLVSCPDTTTFIAP Trigger: AGGAGCAATGAAAGTGGTGGTATCTGGACAACTGACCAGTGTCAACTGTGAGATTGGTAATACAATTAGACTTGTCTGCTTTGAATTGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS TCA 72 bp | GTACCTCGTAGATCTCAGAAACCACTCATCTGCATTTaGGGTCAATTCAAAGCAGACAAGTCTAATTGTATT | + |
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Preference number: 6 (lower is better) Translates to: VPRRSQKPLICI*GQFKADKSNCI Trigger: AATACAATTAGACTTGTCTGCTTTGAATTGACCTCAAATGCAGATGAGTGGTTTCTGAGATCTACGAGGTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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| CDS TCA 72 bp | GATTCTTTTAGTAGCTTTTCTCCCTTGATGAAACTGTaGTTTCCAGAGTGTAATATTGGTTTCCCATTTCCT | + |
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Preference number: 6 (lower is better) Translates to: DSFSSFSPLMKL*FPECNIGFPFP Trigger: AGGAAATGGGAAACCAATATTACACTCTGGAAATCACAGTTTCATCAAGGGAGAAAAGCTACTAAAAGAATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000266.9 |
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