Pregenerated sensors for IER5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056708Ensembl transcript IDs: ENSMUST00000055322.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTTCTTGCTACTTATTCAAGTCAGCCAACACTGTCCCTCGCCTGTaGATGGCTGATATTAAGAACCACACCTTCCATTTCCCAGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: LSCYLFKSANTVPRL*MADIKNHTFHFPAW Trigger: CCAGGCTGGGAAATGGAAGGTGTGGTTCTTAATATCAGCCATTCACAGGCGAGGGACAGTGTTGGCTGACTTGAATAAGTAGCAAGAAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR TCA 90 bp | TGTCATCATGTAGGTGACAAGAGCAAATCAGGAAGTTCTGCTACATaGGAATTAAATTTAGCCAACCTCCCTCGGTCTCCTTCCTTCTCT | + |
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Preference number: 1 (lower is better) Translates to: CHHVGDKSKSGSSAT*ELNLANLPRSPSFS Trigger: AGAGAAGGAAGGAGACCGAGGGAGGTTGGCTAAATTTAATTCTCATGTAGCAGAACTTCCTGATTTGCTCTTGTCACCTACATGATGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR CCA 90 bp | GTACAAAAACCTTATCAGCTCCCCCAACCTTTATACAACAAAGACTaGAGTCACCTTATCTACAAAGCCATAAGGTCCTTCCACTTAGAG | + |
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Preference number: 1 (lower is better) Translates to: VQKPYQLPQPLYNKD*SHLIYKAIRSFHLE Trigger: CTCTAAGTGGAAGGACCTTATGGCTTTGTAGATAAGGTGACTCCAGTCTTTGTTGTATAAAGGTTGGGGGAGCTGATAAGGTTTTTGTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR-3UTR GCA 90 bp | CACACCTTCCATTTCCCAGCCTGGTTGCCCCTCCCCGCCACCTTGTTGGAAACCCCGGGGAAGGGGTGGTaGATTCCAGAATCACAGAAC | + |
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Preference number: 2 (lower is better) Translates to: HTFHFPAWLPLPATLLETPGKGW*IPESQN Trigger: GTTCTGTGATTCTGGAATGCACCACCCCTTCCCCGG...GGTTTCCAACAAGGTGGCGGGGAGGGGCAACCAGGCTGGGAAATGGAAGGTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR-3UTR GCA 90 bp | CACACCTTCCATTTCCCAGCCTGGTTGCCCCTCCCCGCCACCTTGTTGGAAACCCAGCTTCCTTTTCTGTaGTGCTGGCAGAGGAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: HTFHFPAWLPLPATLLETQLPFL*CWQRKV Trigger: GACTTTCCTCTGCCAGCAGCACAGAAAAGGAAGCTG...GGTTTCCAACAAGGTGGCGGGGAGGGGCAACCAGGCTGGGAAATGGAAGGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR CAA 90 bp | CACACCTTCCATTTCCCAGCCTGGTTGCCCCTCCCCGCCACCTTGTaGGAAACCCAGACAAGTGATTACATACATACAAACAGGCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: HTFHFPAWLPLPATL*ETQTSDYIHTNRQW Trigger: CCACTGCCTGTTTGTATGTATGTAATCACTTGTCTGGGTTTCCAACAAGGTGGCGGGGAGGGGCAACCAGGCTGGGAAATGGAAGGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR CAA 90 bp | AACCACACCTTCCATTTCCCAGCCTGGTTGCCCCTCCCCGCCACCTaGTTGGAAACCCAGACAAGTGATTACATACATACAAACAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: NHTFHFPAWLPLPAT*LETQTSDYIHTNRQ Trigger: CTGCCTGTTTGTATGTATGTAATCACTTGTCTGGGTTTCCAACAAGGTGGCGGGGAGGGGCAACCAGGCTGGGAAATGGAAGGTGTGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR-3UTR GCA 90 bp | CAAAGACTGGAGTCACCTTATCTACAAAGCCATAAGGTCCTTCCACTTAGAGCTAGGAAAGTCCCTGTCTaGACCCCCAAAGTCTCAAGC | + |
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Preference number: 2 (lower is better) Translates to: QRLESPYLQSHKVLPLRARKVPV*TPKVSS Trigger: GCTTGAGACTTTGGGGGTGCAGACAGGGACTTTCCT...AGCTCTAAGTGGAAGGACCTTATGGCTTTGTAGATAAGGTGACTCCAGTCTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR-3UTR CCA 90 bp | CCTTTATACAACAAAGACTGGAGTCACCTTATCTACAAAGCCATAAGGTCCTTCCCTTTTCTGTGCTGCTaGCAGAGGAAAGTCCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: PLYNKDWSHLIYKAIRSFPFLCC*QRKVPV Trigger: GACAGGGACTTTCCTCTGCCAGCAGCACAGAAAAGG...GAAGGACCTTATGGCTTTGTAGATAAGGTGACTCCAGTCTTTGTTGTATAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR CAA 90 bp | GGATCTAAACATTTAGACAAGTCGGTTTCATCGGTTTCTTCATGTTaGGTCCTAGTAAGACCTCTGAAGCTGCTATCTAACCCCCACCCA | + |
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Preference number: 2 (lower is better) Translates to: GSKHLDKSVSSVSSC*VLVRPLKLLSNPHP Trigger: TGGGTGGGGGTTAGATAGCAGCTTCAGAGGTCTTACTAGGACCAAACATGAAGAAACCGATGAAACCGACTTGTCTAAATGTTTAGATCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR-3UTR GCA 90 bp | CCTTTATACAACAAAGACTGGAGTCACCTTATCTACAAAGCCATAAGGTCCTTCTTCCTCGAGCCTTTCTaGAGCTTCCTTTTCTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: PLYNKDWSHLIYKAIRSFFLEPF*SFLFCA Trigger: AGCACAGAAAAGGAAGCTGCAGAAAGGCTCGAGGAA...GAAGGACCTTATGGCTTTGTAGATAAGGTGACTCCAGTCTTTGTTGTATAAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR CAA 90 bp | TTAGAGCTTAAGCTATGGCCAAAGAGCATATTTCATATGCTCCTTTaGTCTAAAGGCTATATAGCCCTTTCCCTCTTTCCTCATTTCTGT | + |
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Preference number: 2 (lower is better) Translates to: LELKLWPKSIFHMLL*SKGYIALSLFPHFC Trigger: ACAGAAATGAGGAAAGAGGGAAAGGGCTATATAGCCTTTAGACAAAAGGAGCATATGAAATATGCTCTTTGGCCATAGCTTAAGCTCTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR GCA 72 bp | CCCCTTCCTCGAGCCTTTCTGCAGCTTCCTTTTCTGTaGTGCTGGCAGAGGAAAGTCCCTGTCTGCACCCCC | + |
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Preference number: 3 (lower is better) Translates to: PLPRAFLQLPFL*CWQRKVPVCTP Trigger: GGGGGTGCAGACAGGGACTTTCCTCTGCCAGCAGCACAGAAAAGGAAGCTGCAGAAAGGCTCGAGGAAGGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR GCA 72 bp | GGAAATCCTGTGAGAAAACGCCACTCCGCGCCCCGGTaGGGTCGTAGCTTTCATGAGAGAGAGGTGTGTGTA | + |
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Preference number: 3 (lower is better) Translates to: GNPVRKRHSAPR*GRSFHEREVCV Trigger: TACACACACCTCTCTCTCATGAAAGCTACGACCGCACCGGGGCGCGGAGTGGCGTTTTCTCACAGGATTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR CCA 72 bp | GCTGATATTAAGAACCACACCTTCCATTTCCCAGCCTaGTTGCCCCTCCCCGCCACCTTGTTGGAAACCCAG | + |
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Preference number: 3 (lower is better) Translates to: ADIKNHTFHFPA*LPLPATLLETQ Trigger: CTGGGTTTCCAACAAGGTGGCGGGGAGGGGCAACCAGGCTGGGAAATGGAAGGTGTGGTTCTTAATATCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR TCA 72 bp | ATACAAGTCTCTACTCCAGACGAACTCCCTCTAGTCTaGGGAAATCCTGTGAGAAAACGCCACTCCGCGCCC | + |
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Preference number: 3 (lower is better) Translates to: IQVSTPDELPLV*GNPVRKRHSAP Trigger: GGGCGCGGAGTGGCGTTTTCTCACAGGATTTCCTCAGACTAGAGGGAGTTCGTCTGGAGTAGAGACTTGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR TCA 72 bp | GCCCCTCCCCGCCACCTTGTTGGAAACCCAGACAAGTaGTTACATACATACAAACAGGCAGTGGAGTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: APPRHLVGNPDK*LHTYKQAVELL Trigger: AAGCAACTCCACTGCCTGTTTGTATGTATGTAATCACTTGTCTGGGTTTCCAACAAGGTGGCGGGGAGGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR TCA 72 bp | TACTTATTCAAGTCAGCCAACACTGTCCCTCGCCTGTaGATGGCTGATATTAAGAACCACACCTTCCATTTC | + |
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Preference number: 3 (lower is better) Translates to: YLFKSANTVPRL*MADIKNHTFHF Trigger: GAAATGGAAGGTGTGGTTCTTAATATCAGCCATTCACAGGCGAGGGACAGTGTTGGCTGACTTGAATAAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR TCA 72 bp | GTAGGTGACAAGAGCAAATCAGGAAGTTCTGCTACATaGGAATTAAATTTAGCCAACCTCCCTCGGTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: VGDKSKSGSSAT*ELNLANLPRSP Trigger: AGGAGACCGAGGGAGGTTGGCTAAATTTAATTCTCATGTAGCAGAACTTCCTGATTTGCTCTTGTCACCTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR CCA 72 bp | GAGATTCCCATCAGATCAAACTATAGAAAACCAAACTaGTCTGTCATGACTGAAGAGAAAATTGTAGTGGCA | + |
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Preference number: 3 (lower is better) Translates to: EIPIRSNYRKPN*SVMTEEKIVVA Trigger: TGCCACTACAATTTTCTCTTCAGTCATGACAGACCAGTTTGGTTTTCTATAGTTTGATCTGATGGGAATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR TCA 72 bp | AATTGGTTTGCTCCTAAGAGAGTACCTCTTAAGTACTaGACATTTTGCCTTAGACAAAACGGTCTCTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: NWFAPKRVPLKY*TFCLRQNGLFK Trigger: TTTAAAGAGACCGTTTTGTCTAAGGCAAAATGTTCAGTACTTAAGAGGTACTCTCTTAGGAGCAAACCAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR TCA 90 bp | CACACCTTCCATTTCCCAGCCTGGTTGCCCCTCCCCGCCACCTTGTTGGAAACCATGCTGACGATGCGGTaGGCCTCCAGCTTGAACTCC | + |
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Preference number: 4 (lower is better) Translates to: HTFHFPAWLPLPATLLETMLTMR*ASSLNS Trigger: GGAGTTCAAGCTGGAGGCTCACCGCATCGTCAGCAT...GGTTTCCAACAAGGTGGCGGGGAGGGGCAACCAGGCTGGGAAATGGAAGGTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR GCA 90 bp | TTTCTGCAGCTTCCTTTTCTGTGCTGCTGGCAGAGGAAAGTCCCTGTCTGCACCAGACTTGGCGGGCGCTaGGCAGCACCAACGACACCA | + |
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Preference number: 4 (lower is better) Translates to: FLQLPFLCCWQRKVPVCTRLGGR*AAPTTP Trigger: TGGTGTCGTTGGTGCTGCGCAGCGCCCGCCAAGTCT...GGTGCAGACAGGGACTTTCCTCTGCCAGCAGCACAGAAAAGGAAGCTGCAGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR GCA 90 bp | CACACCTTCCATTTCCCAGCCTGGTTGCCCCTCCCCGCCACCTTGTTGGAAACCGATGCTGATGAGGTTTaGCACGTTCCCGGTCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: HTFHFPAWLPLPATLLETDADEV*HVPGLH Trigger: ATGGAGACCGGGAACGTGGCAAACCTCATCAGCATC...GGTTTCCAACAAGGTGGCGGGGAGGGGCAACCAGGCTGGGAAATGGAAGGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR CCA 90 bp | ACAAAAGTTAACGATCGATCGTCCTCTTCCAATAAGCCTCCAACTCTAGGTCTCTCCCCAGCCGGAGGGTaGCCCGGCTACAGGCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: TKVNDRSSSSNKPPTLGLSPAGG*PGYRLS Trigger: GGAGAGCCTGTAGCCGGGCCACCCTCCGGCTGGGGA...GAGACCTAGAGTTGGAGGCTTATTGGAAGAGGACGATCGATCGTTAACTTTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR GCA 90 bp | CACACACAGATACAAAAGTTAACGATCGATCGTCCTCTTCCAATAAGCCTCCAAGCCACCCACTCCCGCTaGGCCACGCTTCCTGGGACA | + |
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Preference number: 4 (lower is better) Translates to: HTQIQKLTIDRPLPISLQATHSR*ATLPGT Trigger: TGTCCCAGGAAGCGTGGCGCAGCGGGAGTGGGTGGC...TTGGAGGCTTATTGGAAGAGGACGATCGATCGTTAACTTTTGTATCTGTGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR GCA 90 bp | ACACACACAGATACAAAAGTTAACGATCGATCGTCCTCTTCCAATAAGCCTCCATCGCCGGTGACTGGCTaGTCCTCCGAGTTCCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: THTDTKVNDRSSSSNKPPSPVTG*SSEFRR Trigger: GCGCCGGAACTCGGAGGAGCAGCCAGTCACCGGCGA...TGGAGGCTTATTGGAAGAGGACGATCGATCGTTAACTTTTGTATCTGTGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR GCA 90 bp | ACACACACAGATACAAAAGTTAACGATCGATCGTCCTCTTCCAATAAGCCTCCATTGTCGCAGCAGATCTaGCCCGGCTCGGCGGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: THTDTKVNDRSSSSNKPPLSQQI*PGSAAS Trigger: GGAAGCCGCCGAGCCGGGGCAGATCTGCTGCGACAA...TGGAGGCTTATTGGAAGAGGACGATCGATCGTTAACTTTTGTATCTGTGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR GCA 90 bp | CAAAGACTGGAGTCACCTTATCTACAAAGCCATAAGGTCCTTCCACTTAGAGCTAGGCCACGATGGCTGTaGTCCAGGGGCTCATGTCTC | + |
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Preference number: 4 (lower is better) Translates to: QRLESPYLQSHKVLPLRARPRWL*SRGSCL Trigger: GAGACATGAGCCCCTGGAGCACAGCCATCGTGGCCT...AGCTCTAAGTGGAAGGACCTTATGGCTTTGTAGATAAGGTGACTCCAGTCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| 3UTR CAA 72 bp | AAGCTATGGCCAAAGAGCATATTTCATATGCTCCTTTaGTCTAAAGGCTATATAGCCCTTTCCCTCTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: KLWPKSIFHMLL*SKGYIALSLFP Trigger: AGGAAAGAGGGAAAGGGCTATATAGCCTTTAGACAAAAGGAGCATATGAAATATGCTCTTTGGCCATAGCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS CCA 90 bp | GCCACCCACTCCCGCTGCGCCACGCTTCCTGGGACACGGGGCGGGTaGCGCGGGGGACCCGTCCTCGGAGGACCGCTCCTCCACGGCCGG | + |
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Preference number: 5 (lower is better) Translates to: ATHSRCATLPGTRGG*RGGPVLGGPLLHGR Trigger: CCGGCCGTGGAGGAGCGGTCCTCCGAGGACGGGTCCCCCGCGCCACCCGCCCCGTGTCCCAGGAAGCGTGGCGCAGCGGGAGTGGGTGGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS GCA 90 bp | CTCCTCCGAGTTCCGGCGCGGCTTCTTGAGAGGGGTAGAGCCGGGTaGCGAGCAGCTCGCGCGGCCGCCACCCACTCCCGCTGCGCCACG | + |
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Preference number: 5 (lower is better) Translates to: LLRVPARLLERGRAG*RAARAAATHSRCAT Trigger: CGTGGCGCAGCGGGAGTGGGTGGCGGCCGCGCGAGCTGCTCGGCACCCGGCTCTACCCCTCTCAAGAAGCCGCGCCGGAACTCGGAGGAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR CAA 90 bp | GAGACTCGAGAGCCACGGCCCAGCCGGGCTGCCCCTTCTGGGGCGATGTGCTGCTCTCTCAGCACCGGCTaGTCGCAGCAGATCTGCCCC | + |
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Preference number: 5 (lower is better) Translates to: ETREPRPSRAAPSGAMCCSLSTG*SQQICP Trigger: GGGGCAGATCTGCTGCGACAAGCCGGTGCTGAGAGA...GCAGCACATCGCCCCAGAAGGGGCAGCCCGGCTGGGCCGTGGCTCTCGAGTCTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS GCA 90 bp | CCGGTCTCCATCTCCTCGTCGGTGTCGTCCTCGCCGGTGACTGGCTaGTCCTCCGAGTTCCGGCGCGGCTTCTTGAGAGGGGTAGAGCCG | + |
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Preference number: 5 (lower is better) Translates to: PVSISSSVSSSPVTG*SSEFRRGFLRGVEP Trigger: CGGCTCTACCCCTCTCAAGAAGCCGCGCCGGAACTCGGAGGAGCAGCCAGTCACCGGCGAGGACGACACCGACGAGGAGATGGAGACCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS CCA 90 bp | GTTCCCGGTCTCCATCTCCTCGTCGGTGTCGTCCTCGCCGGTGACTaGCTGCTCCTCCGAGTTCCGGCGCGGCTTCTTGAGAGGGGTAGA | + |
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Preference number: 5 (lower is better) Translates to: VPGLHLLVGVVLAGD*LLLRVPARLLERGR Trigger: TCTACCCCTCTCAAGAAGCCGCGCCGGAACTCGGAGGAGCAGCCAGTCACCGGCGAGGACGACACCGACGAGGAGATGGAGACCGGGAAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS-3UTR CAA 90 bp | CACGGACACACACAGATACAAAAGTTAACGATCGATCGTCCTCTTCCAATAAGCGTCACTCAGGTAGACTaGGCGGGCGCTGCGCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: HGHTQIQKLTIDRPLPISVTQVD*AGAAQH Trigger: GTGCTGCGCAGCGCCCGCCAAGTCTACCTGAGTGAC...GCTTATTGGAAGAGGACGATCGATCGTTAACTTTTGTATCTGTGTGTGTCCGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS CCA 72 bp | TCCCGCTGCGCCACGCTTCCTGGGACACGGGGCGGGTaGCGCGGGGGACCCGTCCTCGGAGGACCGCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SRCATLPGTRGG*RGGPVLGGPLL Trigger: GAGGAGCGGTCCTCCGAGGACGGGTCCCCCGCGCCACCCGCCCCGTGTCCCAGGAAGCGTGGCGCAGCGGGA 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS GCA 72 bp | GTTCCGGCGCGGCTTCTTGAGAGGGGTAGAGCCGGGTaGCGAGCAGCTCGCGCGGCCGCCACCCACTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: VPARLLERGRAG*RAARAAATHSR Trigger: GCGGGAGTGGGTGGCGGCCGCGCGAGCTGCTCGGCACCCGGCTCTACCCCTCTCAAGAAGCCGCGCCGGAAC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS CAA 90 bp | GCCACGATGGCTGTGCTCCAGGGGCTCATGTCTCTCAGCACCGGCTaGTCGCAGCAGATCTGCCCCGGCTCGGCGGCTTCCGGGCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: ATMAVLQGLMSLSTG*SQQICPGSAASGPP Trigger: GGGCGGCCCGGAAGCCGCCGAGCCGGGGCAGATCTGCTGCGACAAGCCGGTGCTGAGAGACATGAGCCCCTGGAGCACAGCCATCGTGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS TCA 72 bp | CGGTCTCCATCTCCTCGTCGGTGTCGTCCTCGCCGGTaGCTGGCTGCTCCTCCGAGTTCCGGCGCGGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RSPSPRRCRPRR*LAAPPSSGAAS Trigger: AGAAGCCGCGCCGGAACTCGGAGGAGCAGCCAGTCACCGGCGAGGACGACACCGACGAGGAGATGGAGACCG 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS CAA 72 bp | GCTGTGCTCCAGGGGCTCATGTCTCTCAGCACCGGCTaGTCGCAGCAGATCTGCCCCGGCTCGGCGGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: AVLQGLMSLSTG*SQQICPGSAAS Trigger: GGAAGCCGCCGAGCCGGGGCAGATCTGCTGCGACAAGCCGGTGCTGAGAGACATGAGCCCCTGGAGCACAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS GCA 72 bp | ATCTCCTCGTCGGTGTCGTCCTCGCCGGTGACTGGCTaGTCCTCCGAGTTCCGGCGCGGCTTCTTGAGAGGG | + |
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Preference number: 6 (lower is better) Translates to: ISSSVSSSPVTG*SSEFRRGFLRG Trigger: CCCTCTCAAGAAGCCGCGCCGGAACTCGGAGGAGCAGCCAGTCACCGGCGAGGACGACACCGACGAGGAGAT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS CCA 72 bp | CTCCATCTCCTCGTCGGTGTCGTCCTCGCCGGTGACTaGCTGCTCCTCCGAGTTCCGGCGCGGCTTCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: LHLLVGVVLAGD*LLLRVPARLLE Trigger: CTCAAGAAGCCGCGCCGGAACTCGGAGGAGCAGCCAGTCACCGGCGAGGACGACACCGACGAGGAGATGGAG 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS CAA 72 bp | CAGGTAGAGGCCAGGGCAGGGGTCACTCAGGTAGACTaGGCGGGCGCTGCGCAGCACCAACGACACCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: QVEARAGVTQVD*AGAAQHQRHQE Trigger: CTCTTGGTGTCGTTGGTGCTGCGCAGCGCCCGCCAAGTCTACCTGAGTGACCCCTGCCCTGGCCTCTACCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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| CDS GCA 72 bp | TCCCGAGAAGCTAGACCCGAAGATGCTGATGAGGTTTaGCACGTTCCCGGTCTCCATCTCCTCGTCGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: SREARPEDADEV*HVPGLHLLVGV Trigger: GACACCGACGAGGAGATGGAGACCGGGAACGTGGCAAACCTCATCAGCATCTTCGGGTCTAGCTTCTCGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055322.6 |
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