Pregenerated sensors for IER3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003541Ensembl transcript IDs: ENSMUST00000003635.7
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTTCACAGAACATACATACTAGGCGACCCCAGACAGCCGCCCTCTaGCAATCCATGGACCCAAGACTCCTGCAGCTGCCCCTGAGAAGC | + |
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Preference number: 1 (lower is better) Translates to: CSQNIHTRRPQTAAL*QSMDPRLLQLPLRS Trigger: GCTTCTCAGGGGCAGCTGCAGGAGTCTTGGGTCCATGGATTGTCAGAGGGCGGCTGTCTGGGGTCGCCTAGTATGTATGTTCTGTGAACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| 3UTR-3UTR TCA 90 bp | TACATACTAGGCGACCCCAGACAGCCGCCCTCTGACAATCCATGGACCCAAGACTCCTGCAGCTGCCCCTaGGAAGCAACCAGAAGACAT | + |
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Preference number: 2 (lower is better) Translates to: YILGDPRQPPSDNPWTQDSCSCP*EATRRH Trigger: ATGTCTTCTGGTTGCTTCTCAGGGGCAGCTGCAGGA...GTCTTGGGTCCATGGATTGTCAGAGGGCGGCTGTCTGGGGTCGCCTAGTATGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| 3UTR-3UTR CAA 90 bp | GACCCCAGACAGCCGCCCTCTGACAATCCATGGACCCAAGACTCCTGCAGCTGCCAACAGACTACAGAGTaGAAGTGCTGGAAGACGGAG | + |
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Preference number: 3 (lower is better) Translates to: DPRQPPSDNPWTQDSCSCQQTTE*KCWKTE Trigger: CTCCGTCTTCCAGCACTTCAACTCTGTAGTCTGTTG...GCAGCTGCAGGAGTCTTGGGTCCATGGATTGTCAGAGGGCGGCTGTCTGGGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| 3UTR TCA 72 bp | GACAATCCATGGACCCAAGACTCCTGCAGCTGCCCCTaGGAAGCAACCAGAAGACATCAAAGGCCGGATTCC | + |
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Preference number: 3 (lower is better) Translates to: DNPWTQDSCSCP*EATRRHQRPDS Trigger: GGAATCCGGCCTTTGATGTCTTCTGGTTGCTTCTCAGGGGCAGCTGCAGGAGTCTTGGGTCCATGGATTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR CCA 90 bp | CTAATCCCCAAGCTGGGAGTCCTACCACCCGGGTCCTCCCTCCCACAACTCTGTGCCGGTGGAGGGAGCTaGAGAAGGGGCCCTCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: LIPKLGVLPPGSSLPQLCAGGGS*RRGPQA Trigger: GGCCTGAGGGCCCCTTCTCCAGCTCCCTCCACCGGC...ACAGAGTTGTGGGAGGGAGGACCCGGGTGGTAGGACTCCCAGCTTGGGGATTAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR CCA 90 bp | CTAATCCCCAAGCTGGGAGTCCTACCACCCGGGTCCTCCCTCCCACAACTCTGTAGGCCAGTCATGGTGTaGAGATGGTTGCGCGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LIPKLGVLPPGSSLPQLCRPVMV*RWLREW Trigger: CCACTCGCGCAACCATCTCCACACCATGACTGGCCT...ACAGAGTTGTGGGAGGGAGGACCCGGGTGGTAGGACTCCCAGCTTGGGGATTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR TCA 90 bp | TACATACTAGGCGACCCCAGACAGCCGCCCTCTGACAATCCATGGACCCAAGACGGAGAGGGTCGAAGGTaGAAATTTCGGGACCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: YILGDPRQPPSDNPWTQDGEGRR*KFRDQS Trigger: GCTCTGGTCCCGAAATTTTCACCTTCGACCCTCTCC...GTCTTGGGTCCATGGATTGTCAGAGGGCGGCTGTCTGGGGTCGCCTAGTATGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR GCA 90 bp | ATATTAATTAGACACGGAGAAAGTCTCTGTCCGTCCCCAGTGGGCCTAGCCAGGAGAGCACCCTTCGGCTaGGTTTTCGGTGCCCGCGAG | + |
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Preference number: 4 (lower is better) Translates to: ILIRHGESLCPSPVGLARRAPFG*VFGARE Trigger: CTCGCGGGCACCGAAAACGCAGCCGAAGGGTGCTCT...CCTGGCTAGGCCCACTGGGGACGGACAGAGACTTTCTCCGTGTCTAATTAATAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR CCA 90 bp | AAGGCCGGATTCCCAAGGGTCTTCCAAAGCCTTACAACAGACTACAGAGTTGAAGGAGTTCCGGGCCGGTaGAGGGAGCTGGAGAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: KAGFPRVFQSLTTDYRVEGVPGR*RELEKG Trigger: CCCCTTCTCCAGCTCCCTCCACCGGCCCGGAACTCC...TTCAACTCTGTAGTCTGTTGTAAGGCTTTGGAAGACCCTTGGGAATCCGGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR CCA 90 bp | CTAATCCCCAAGCTGGGAGTCCTACCACCCGGGTCCTCCCTCCCACAACTCTGTTCAGCCATCAAAATCTaGCAGAAGATGATGGCGAAC | + |
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Preference number: 4 (lower is better) Translates to: LIPKLGVLPPGSSLPQLCSAIKI*QKMMAN Trigger: GTTCGCCATCATCTTCTGCCAGATTTTGATGGCTGA...ACAGAGTTGTGGGAGGGAGGACCCGGGTGGTAGGACTCCCAGCTTGGGGATTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR CCA 90 bp | ATATTAATTAGACACGGAGAAAGTCTCTGTCCGTCCCCAGTGGGCCTAGCCAGGGCCGCCGGATGTTGCTaGAGAAAAGCTTTAAGATCC | + |
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Preference number: 4 (lower is better) Translates to: ILIRHGESLCPSPVGLARAAGCC*RKALRS Trigger: GGATCTTAAAGCTTTTCTCCAGCAACATCCGGCGGC...CCTGGCTAGGCCCACTGGGGACGGACAGAGACTTTCTCCGTGTCTAATTAATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS TCA 90 bp | AACGCGCGGTGGACACCACGGCCCGCTCCGGGAGAGGGTCGAAGGTaGAAATTTCGGGACCAGAGCCCCGCCGGAGTTCCGGGCCGGTGG | + |
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Preference number: 5 (lower is better) Translates to: NARWTPRPAPGEGRR*KFRDQSPAGVPGRW Trigger: CCACCGGCCCGGAACTCCGGCGGGGCTCTGGTCCCGAAATTTTCACCTTCGACCCTCTCCCGGAGCGGGCCGTGGTGTCCACCGCGCGTT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS GCA 90 bp | TTGGTAGCTGGCGCCGGACCACTCGAGGGTAGAGCACCCTTCGGCTaGGTTTTCGGTGCCCGCGAGAAGTGTTCAAACGCGCGGTGGACA | + |
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Preference number: 5 (lower is better) Translates to: LVAGAGPLEGRAPFG*VFGAREKCSNARWT Trigger: TGTCCACCGCGCGTTTGAACACTTCTCGCGGGCACCGAAAACGCAGCCGAAGGGTGCTCTACCCTCGAGTGGTCCGGCGCCAGCTACCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR CAA 90 bp | GTTTGGGATACGTTCTCTCGCACCAGGTACCCATCCATGGTGCCTTTGTTTCTTTGTTGGGTTCCTCGGTaGGTAGCTGGCGCCGGACCA | + |
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Preference number: 5 (lower is better) Translates to: VWDTFSRTRYPSMVPLFLCWVPR*VAGAGP Trigger: TGGTCCGGCGCCAGCTACCAACCGAGGAACCCAACA...AAGAAACAAAGGCACCATGGATGGGTACCTGGTGCGAGAGAACGTATCCCAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR CAA 90 bp | ATATTAATTAGACACGGAGAAAGTCTCTGTCCGTCCCCAGTGGGCCTAGCCAGGGAAGGCCGCCGGATGTaGCTGGAGAAAAGCTTTAAG | + |
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Preference number: 5 (lower is better) Translates to: ILIRHGESLCPSPVGLAREGRRM*LEKSFK Trigger: CTTAAAGCTTTTCTCCAGCAACATCCGGCGGCCTTC...CCTGGCTAGGCCCACTGGGGACGGACAGAGACTTTCTCCGTGTCTAATTAATAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS-3UTR CAA 90 bp | AGTTTGGGATACGTTCTCTCGCACCAGGTACCCATCCATGGTGCCTTTGTTTCTAGAAAGAGGACCCTCTaGGCAATGTTGGGTTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: SLGYVLSHQVPIHGAFVSRKRTL*AMLGSS Trigger: CGAGGAACCCAACATTGCCAAGAGGGTCCTCTTTCT...AGAAACAAAGGCACCATGGATGGGTACCTGGTGCGAGAGAACGTATCCCAAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS TCA 72 bp | TGGACACCACGGCCCGCTCCGGGAGAGGGTCGAAGGTaGAAATTTCGGGACCAGAGCCCCGCCGGAGTTCCG | + |
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Preference number: 6 (lower is better) Translates to: WTPRPAPGEGRR*KFRDQSPAGVP Trigger: CGGAACTCCGGCGGGGCTCTGGTCCCGAAATTTTCACCTTCGACCCTCTCCCGGAGCGGGCCGTGGTGTCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS CCA 72 bp | GTTTTCGGTGCCCGCGAGAAGTGTTCAAACGCGCGGTaGACACCACGGCCCGCTCCGGGAGAGGGTCGAAGG | + |
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Preference number: 6 (lower is better) Translates to: VFGAREKCSNAR*TPRPAPGEGRR Trigger: CCTTCGACCCTCTCCCGGAGCGGGCCGTGGTGTCCACCGCGCGTTTGAACACTTCTCGCGGGCACCGAAAAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS GCA 72 bp | GGCGCCGGACCACTCGAGGGTAGAGCACCCTTCGGCTaGGTTTTCGGTGCCCGCGAGAAGTGTTCAAACGCG | + |
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Preference number: 6 (lower is better) Translates to: GAGPLEGRAPFG*VFGAREKCSNA Trigger: CGCGTTTGAACACTTCTCGCGGGCACCGAAAACGCAGCCGAAGGGTGCTCTACCCTCGAGTGGTCCGGCGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS CCA 72 bp | TGGCGAACAGGAGAAAGAGGACCCTCTTGGCAATGTTaGGTTCCTCGGTTGGTAGCTGGCGCCGGACCACTC | + |
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Preference number: 6 (lower is better) Translates to: WRTGERGPSWQC*VPRLVAGAGPL Trigger: GAGTGGTCCGGCGCCAGCTACCAACCGAGGAACCCAACATTGCCAAGAGGGTCCTCTTTCTCCTGTTCGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS CAA 72 bp | GAAAGAGGACCCTCTTGGCAATGTTGGGTTCCTCGGTaGGTAGCTGGCGCCGGACCACTCGAGGGTAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: ERGPSWQCWVPR*VAGAGPLEGRA Trigger: TGCTCTACCCTCGAGTGGTCCGGCGCCAGCTACCAACCGAGGAACCCAACATTGCCAAGAGGGTCCTCTTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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| CDS CAA 72 bp | ATGGCGAACAGGAGAAAGAGGACCCTCTTGGCAATGTaGGGTTCCTCGGTTGGTAGCTGGCGCCGGACCACT | + |
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Preference number: 6 (lower is better) Translates to: MANRRKRTLLAM*GSSVGSWRRTT Trigger: AGTGGTCCGGCGCCAGCTACCAACCGAGGAACCCAACATTGCCAAGAGGGTCCTCTTTCTCCTGTTCGCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003635.7 |
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