Pregenerated sensors for IER2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053560Ensembl transcript IDs: ENSMUST00000060427.6
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGCAAGGCAACAGGAAGCACCCGCGTCTGTCCCATGACGCAACTCTaGCCGCTTGCACAAGCGTGCCCACTTGTAGGGGCCGAAACGCGA | + |
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Preference number: 1 (lower is better) Translates to: RKATGSTRVCPMTQL*PLAQACPLVGAETR Trigger: TCGCGTTTCGGCCCCTACAAGTGGGCACGCTTGTGCAAGCGGTCAGAGTTGCGTCATGGGACAGACGCGGGTGCTTCCTGTTGCCTTGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| 3UTR GCA 90 bp | AACAGGAAGCACCCGCGTCTGTCCCATGACGCAACTCTGACCGCTTaGACAAGCGTGCCCACTTGTAGGGGCCGAAACGCGAATGGTAGT | + |
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Preference number: 1 (lower is better) Translates to: NRKHPRLSHDATLTA*TSVPTCRGRNANGS Trigger: ACTACCATTCGCGTTTCGGCCCCTACAAGTGGGCACGCTTGTGCAAGCGGTCAGAGTTGCGTCATGGGACAGACGCGGGTGCTTCCTGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| 3UTR TCA 90 bp | TGCCCACTTGTAGGGGCCGAAACGCGAATGGTAGTGAAACGGCCTTaGAAGGGCAGCCTGGCCCCTAGAGAGTTCGACCCTGAGATTCAA | + |
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Preference number: 1 (lower is better) Translates to: CPLVGAETRMVVKRP*KGSLAPREFDPEIQ Trigger: TTGAATCTCAGGGTCGAACTCTCTAGGGGCCAGGCTGCCCTTTCAAGGCCGTTTCACTACCATTCGCGTTTCGGCCCCTACAAGTGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| 3UTR CCA 72 bp | AAGGCGCCCGCGCCCCTCGCTCCTCAGTCCTTCCCCTaGCCTCTCGGCAGCTCGGGCCGCGGCTCTTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: KAPAPLAPQSFP*PLGSSGRGSSS Trigger: TGAAGAAGAGCCGCGGCCCGAGCTGCCGAGAGGCCAGGGGAAGGACTGAGGAGCGAGGGGCGCGGGCGCCTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| 3UTR-3UTR CAA 90 bp | GACTCAAGTCACTTCCCAGTCCCTAGGGCGGGTCCACACCCTGGCCTCCTCCCAGGTAGTGAAACGGCCTaGAAAGGGCAGCCTGGCCCC | + |
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Preference number: 3 (lower is better) Translates to: DSSHFPVPRAGPHPGLLPGSETA*KGQPGP Trigger: GGGGCCAGGCTGCCCTTTCAAGGCCGTTTCACTACC...TGGGAGGAGGCCAGGGTGTGGACCCGCCCTAGGGACTGGGAAGTGACTTGAGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| 3UTR GCA 72 bp | CACCCGCGTCTGTCCCATGACGCAACTCTGACCGCTTaGACAAGCGTGCCCACTTGTAGGGGCCGAAACGCG | + |
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Preference number: 3 (lower is better) Translates to: HPRLSHDATLTA*TSVPTCRGRNA Trigger: CGCGTTTCGGCCCCTACAAGTGGGCACGCTTGTGCAAGCGGTCAGAGTTGCGTCATGGGACAGACGCGGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| 3UTR TCA 72 bp | ACAGGAAGCACCCGCGTCTGTCCCATGACGCAACTCTaGCCGCTTGCACAAGCGTGCCCACTTGTAGGGGCC | + |
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Preference number: 3 (lower is better) Translates to: TGSTRVCPMTQL*PLAQACPLVGA Trigger: GGCCCCTACAAGTGGGCACGCTTGTGCAAGCGGTCAGAGTTGCGTCATGGGACAGACGCGGGTGCTTCCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| 3UTR TCA 72 bp | GTAGGGGCCGAAACGCGAATGGTAGTGAAACGGCCTTaGAAGGGCAGCCTGGCCCCTAGAGAGTTCGACCCT | + |
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Preference number: 3 (lower is better) Translates to: VGAETRMVVKRP*KGSLAPREFDP Trigger: AGGGTCGAACTCTCTAGGGGCCAGGCTGCCCTTTCAAGGCCGTTTCACTACCATTCGCGTTTCGGCCCCTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR GCA 90 bp | GCGCCCGCGCCCCTCGCTCCTCAGTCCTTCCCCTGGCCTCTCGGCAGCTCGGGCATGGGCTCCGGAGGCTaGACGGCTTCGGGGGACGCT | + |
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Preference number: 4 (lower is better) Translates to: APAPLAPQSFPWPLGSSGMGSGG*TASGDA Trigger: AGCGTCCCCCGAAGCCGTGCAGCCTCCGGAGCCCAT...GCCCGAGCTGCCGAGAGGCCAGGGGAAGGACTGAGGAGCGAGGGGCGCGGGCGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR GCA 90 bp | ACGTCTGGGAGAAGGCGCCCGCGCCCCTCGCTCCTCAGTCCTTCCCCTGGCCTCGCTTCCCGCGGCGGGTaGAGGCGAGGGTCAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: TSGRRRPRPSLLSPSPGLASRGG*RRGSRA Trigger: GGCTCTTGACCCTCGCCTGCACCCGCCGCGGGAAGC...GAGGCCAGGGGAAGGACTGAGGAGCGAGGGGCGCGGGCGCCTTCTCCCAGACGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CCA 90 bp | GCGCCCGCGCCCCTCGCTCCTCAGTCCTTCCCCTGGCCTCTCGGCAGCTCGGGCGGTGGGCTTCTACCTTaGCTGAGAGGTAGACCTCTC | + |
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Preference number: 4 (lower is better) Translates to: APAPLAPQSFPWPLGSSGGGLLP*LRGRPL Trigger: GAGAGGTCTACCTCTCAGCCAAGGTAGAAGCCCACC...GCCCGAGCTGCCGAGAGGCCAGGGGAAGGACTGAGGAGCGAGGGGCGCGGGCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CCA 90 bp | GCGCCCGCGCCCCTCGCTCCTCAGTCCTTCCCCTGGCCTCTCGGCAGCTCGGGCACGGGCCTTCTTGCTTaGTACCAGTCCGGCATCACT | + |
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Preference number: 4 (lower is better) Translates to: APAPLAPQSFPWPLGSSGTGLLA*YQSGIT Trigger: AGTGATGCCGGACTGGTACCAAGCAAGAAGGCCCGT...GCCCGAGCTGCCGAGAGGCCAGGGGAAGGACTGAGGAGCGAGGGGCGCGGGCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CCA 90 bp | GACTCAAGTCACTTCCCAGTCCCTAGGGCGGGTCCACACCCTGGCCTCCTCCCAAGCTGCAGACTCCGGTaGAGTCGCAAGCCACCTCGC | + |
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Preference number: 4 (lower is better) Translates to: DSSHFPVPRAGPHPGLLPSCRLR*SRKPPR Trigger: GCGAGGTGGCTTGCGACTCCACCGGAGTCTGCAGCT...TGGGAGGAGGCCAGGGTGTGGACCCGCCCTAGGGACTGGGAAGTGACTTGAGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CCA 90 bp | CCCACACCCACGCAAGGCAACAGGAAGCACCCGCGTCTGTCCCATGACGCAACTCTGGAGAAGCGCCTTTaGAGGACGCGGGCGAGGTTA | + |
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Preference number: 4 (lower is better) Translates to: PTPTQGNRKHPRLSHDATLEKRL*RTRARL Trigger: TAACCTCGCCCGCGTCCTCCAAAGGCGCTTCTCCAG...AGTTGCGTCATGGGACAGACGCGGGTGCTTCCTGTTGCCTTGCGTGGGTGTGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CCA 90 bp | GACTCAAGTCACTTCCCAGTCCCTAGGGCGGGTCCACACCCTGGCCTCCTCCCACGCTGCATGCGAGAGTaGTACATCTTCCATACCGAC | + |
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Preference number: 4 (lower is better) Translates to: DSSHFPVPRAGPHPGLLPRCMRE*YIFHTD Trigger: GTCGGTATGGAAGATGTACCACTCTCGCATGCAGCG...TGGGAGGAGGCCAGGGTGTGGACCCGCCCTAGGGACTGGGAAGTGACTTGAGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CCA 90 bp | CCCACACCCACGCAAGGCAACAGGAAGCACCCGCGTCTGTCCCATGACGCAACTCACAGTTCAGGAGACTaGAGAAGCGCCTTTGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: PTPTQGNRKHPRLSHDATHSSGD*RSAFGG Trigger: TCCTCCAAAGGCGCTTCTCCAGTCTCCTGAACTGTG...AGTTGCGTCATGGGACAGACGCGGGTGCTTCCTGTTGCCTTGCGTGGGTGTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CAA 90 bp | GCGCCCGCGCCCCTCGCTCCTCAGTCCTTCCCCTGGCCTCTCGGCAGCTCGGGCGCTCGCACCAGCACGTaGAGCATATTGTCGGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: APAPLAPQSFPWPLGSSGARTST*SILSAG Trigger: CCCGGCCGACAATATGCTCAACGTGCTGGTGCGAGC...GCCCGAGCTGCCGAGAGGCCAGGGGAAGGACTGAGGAGCGAGGGGCGCGGGCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CAA 90 bp | GCGCCCGCGCCCCTCGCTCCTCAGTCCTTCCCCTGGCCTCTCGGCAGCTCGGGCTCGCAGCACTTCCTCTaGCGTATCCATGGGCTCCGG | + |
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Preference number: 5 (lower is better) Translates to: APAPLAPQSFPWPLGSSGSQHFL*RIHGLR Trigger: CCGGAGCCCATGGATACGCAAGAGGAAGTGCTGCGA...GCCCGAGCTGCCGAGAGGCCAGGGGAAGGACTGAGGAGCGAGGGGCGCGGGCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 90 bp | TCGGGGGACGCTACTTCCACTGCAACTTCGGCTTCCCGCGGCGGGTaGAGGCGAGGGTCAAGAGCCCTGCGGGATGGCGGGAACTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: SGDATSTATSASRGG*RRGSRALRDGGNSG Trigger: GCCCGAGTTCCCGCCATCCCGCAGGGCTCTTGACCCTCGCCTGCACCCGCCGCGGGAAGCCGAAGTTGCAGTGGAAGTAGCGTCCCCCGA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 90 bp | CAACTTCGGCTTCCCGCGGCGGGTGCAGGCGAGGGTCAAGAGCCCTaGGGGATGGCGGGAACTCGGGCTGGTGGGCTTCTACCTTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: QLRLPAAGAGEGQEP*GMAGTRAGGLLPWL Trigger: CAGCCAAGGTAGAAGCCCACCAGCCCGAGTTCCCGCCATCCCGCAGGGCTCTTGACCCTCGCCTGCACCCGCCGCGGGAAGCCGAAGTTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 90 bp | CATGGGCTCCGGAGGCTGCACGGCTTCGGGGGACGCTACTTCCACTaGAACTTCGGCTTCCCGCGGCGGGTGCAGGCGAGGGTCAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: HGLRRLHGFGGRYFH*NFGFPRRVQARVKS Trigger: GCTCTTGACCCTCGCCTGCACCCGCCGCGGGAAGCCGAAGTTGCAGTGGAAGTAGCGTCCCCCGAAGCCGTGCAGCCTCCGGAGCCCATG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CAA 90 bp | CACGTCTGGGAGAAGGCGCCCGCGCCCCTCGCTCCTCAGTCCTTCCCCTGGCCTAGCACGTTGAGCATATaGTCGGCCGGGCGGCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: HVWEKAPAPLAPQSFPWPSTLSI*SAGRQA Trigger: AGCCTGCCGCCCGGCCGACAATATGCTCAACGTGCT...AGGCCAGGGGAAGGACTGAGGAGCGAGGGGCGCGGGCGCCTTCTCCCAGACGTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 90 bp | CCTTTGGAGGACGCGGGCGAGGTTAGGGAAGGCACCTTCGCTTTGTaGCGGAGGAAGCTGCAGGCGATCGGGAACCTCCGACGTCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: PLEDAGEVREGTFAL*RRKLQAIGNLRRRL Trigger: GAGGCGACGTCGGAGGTTCCCGATCGCCTGCAGCTTCCTCCGGCACAAAGCGAAGGTGCCTTCCCTAACCTCGCCCGCGTCCTCCAAAGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CCA 90 bp | GCGCAGGGGTCTCCTGGACTCGCAGCACTTCCTCTTGCGTATCCATaGGCTCCGGAGGCTGCACGGCTTCGGGGGACGCTACTTCCACTG | + |
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Preference number: 5 (lower is better) Translates to: AQGSPGLAALPLAYP*APEAARLRGTLLPL Trigger: CAGTGGAAGTAGCGTCCCCCGAAGCCGTGCAGCCTCCGGAGCCCATGGATACGCAAGAGGAAGTGCTGCGAGTCCAGGAGACCCCTGCGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CCA 90 bp | GGGGGCACGGCGGGTCCACAGTTCAGGAGACTGGAGAAGCGCCTTTaGAGGACGCGGGCGAGGTTAGGGAAGGCACCTTCGCTTTGTGCC | + |
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Preference number: 5 (lower is better) Translates to: GGTAGPQFRRLEKRL*RTRARLGKAPSLCA Trigger: GGCACAAAGCGAAGGTGCCTTCCCTAACCTCGCCCGCGTCCTCCAAAGGCGCTTCTCCAGTCTCCTGAACTGTGGACCCGCCGTGCCCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS TCA 90 bp | CCTGCGGGATGGCGGGAACTCGGGCTGGTGGGCTTCTACCTTGGCTaGGAGGTAGACCTCTCGAGCGCTGCGCATAACGAGGGACAGCTG | + |
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Preference number: 5 (lower is better) Translates to: PAGWRELGLVGFYLG*EVDLSSAAHNEGQL Trigger: CAGCTGTCCCTCGTTATGCGCAGCGCTCGAGAGGTCTACCTCTCAGCCAAGGTAGAAGCCCACCAGCCCGAGTTCCCGCCATCCCGCAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS-3UTR CAA 90 bp | GACTCAAGTCACTTCCCAGTCCCTAGGGCGGGTCCACACCCTGGCCTCCTCCCAACTGGAGAAGCGCCTTaGGAGGACGCGGGCGAGGTT | + |
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Preference number: 5 (lower is better) Translates to: DSSHFPVPRAGPHPGLLPTGEAP*EDAGEV Trigger: AACCTCGCCCGCGTCCTCCAAAGGCGCTTCTCCAGT...TGGGAGGAGGCCAGGGTGTGGACCCGCCCTAGGGACTGGGAAGTGACTTGAGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CCA 90 bp | ACCTCTCGAGCGCTGCGCATAACGAGGGACAGCTGCAGACTCCGGTaGAGTCGCAAGCCACCTCGCTGCATGCGAGAGTGGTACATCTTC | + |
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Preference number: 5 (lower is better) Translates to: TSRALRITRDSCRLR*SRKPPRCMREWYIF Trigger: GAAGATGTACCACTCTCGCATGCAGCGAGGTGGCTTGCGACTCCACCGGAGTCTGCAGCTGTCCCTCGTTATGCGCAGCGCTCGAGAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 90 bp | ACGAGGGACAGCTGCAGACTCCGGTGGAGTCGCAAGCCACCTCGCTaGATGCGAGAGTGGTACATCTTCCATACCGACAGAGTCATGATG | + |
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Preference number: 5 (lower is better) Translates to: TRDSCRLRWSRKPPR*MREWYIFHTDRVMM Trigger: CATCATGACTCTGTCGGTATGGAAGATGTACCACTCTCGCATGCAGCGAGGTGGCTTGCGACTCCACCGGAGTCTGCAGCTGTCCCTCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CCA 90 bp | TGCAGACTCCGGTGGAGTCGCAAGCCACCTCGCTGCATGCGAGAGTaGTACATCTTCCATACCGACAGAGTCATGATGCGCTGCGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: CRLRWSRKPPRCMRE*YIFHTDRVMMRCAS Trigger: AGAAGCGCAGCGCATCATGACTCTGTCGGTATGGAAGATGTACCACTCTCGCATGCAGCGAGGTGGCTTGCGACTCCACCGGAGTCTGCA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 72 bp | CTTCCCGCGGCGGGTGCAGGCGAGGGTCAAGAGCCCTaGGGGATGGCGGGAACTCGGGCTGGTGGGCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: LPAAGAGEGQEP*GMAGTRAGGLL Trigger: TAGAAGCCCACCAGCCCGAGTTCCCGCCATCCCGCAGGGCTCTTGACCCTCGCCTGCACCCGCCGCGGGAAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 72 bp | CGGAGGCTGCACGGCTTCGGGGGACGCTACTTCCACTaGAACTTCGGCTTCCCGCGGCGGGTGCAGGCGAGG | + |
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Preference number: 6 (lower is better) Translates to: RRLHGFGGRYFH*NFGFPRRVQAR Trigger: CCTCGCCTGCACCCGCCGCGGGAAGCCGAAGTTGCAGTGGAAGTAGCGTCCCCCGAAGCCGTGCAGCCTCCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CCA 72 bp | CGGCGGGTGCAGGCGAGGGTCAAGAGCCCTGCGGGATaGCGGGAACTCGGGCTGGTGGGCTTCTACCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: RRVQARVKSPAG*RELGLVGFYLG Trigger: GCCAAGGTAGAAGCCCACCAGCCCGAGTTCCCGCCATCCCGCAGGGCTCTTGACCCTCGCCTGCACCCGCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 72 bp | GCTACTTCCACTGCAACTTCGGCTTCCCGCGGCGGGTaGAGGCGAGGGTCAAGAGCCCTGCGGGATGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: ATSTATSASRGG*RRGSRALRDGG Trigger: CCCGCCATCCCGCAGGGCTCTTGACCCTCGCCTGCACCCGCCGCGGGAAGCCGAAGTTGCAGTGGAAGTAGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CAA 90 bp | GCGCCTTTGGAGGACGCGGGCGAGGTTAGGGAAGGCACCTTCGCTTaGTGCCGGAGGAAGCTGCAGGCGATCGGGAACCTCCGACGTCGC | + |
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Preference number: 6 (lower is better) Translates to: APLEDAGEVREGTFA*CRRKLQAIGNLRRR Trigger: GCGACGTCGGAGGTTCCCGATCGCCTGCAGCTTCCTCCGGCACAAAGCGAAGGTGCCTTCCCTAACCTCGCCCGCGTCCTCCAAAGGCGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CAA 72 bp | AAGGCCACCACAGCTCGCACCAGCACGTTGAGCATATaGTCGGCCGGGCGGCAGGCTGGCTTGGCCTCGCAC | + |
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Preference number: 6 (lower is better) Translates to: KATTARTSTLSI*SAGRQAGLASH Trigger: GTGCGAGGCCAAGCCAGCCTGCCGCCCGGCCGACAATATGCTCAACGTGCTGGTGCGAGCTGTGGTGGCCTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CAA 90 bp | CGGGGGCACGGCGGGTCCACAGTTCAGGAGACTGGAGAAGCGCCTTaGGAGGACGCGGGCGAGGTTAGGGAAGGCACCTTCGCTTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: RGHGGSTVQETGEAP*EDAGEVREGTFALC Trigger: GCACAAAGCGAAGGTGCCTTCCCTAACCTCGCCCGCGTCCTCCAAAGGCGCTTCTCCAGTCTCCTGAACTGTGGACCCGCCGTGCCCCCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 72 bp | GACGCGGGCGAGGTTAGGGAAGGCACCTTCGCTTTGTaGCGGAGGAAGCTGCAGGCGATCGGGAACCTCCGA | + |
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Preference number: 6 (lower is better) Translates to: DAGEVREGTFAL*RRKLQAIGNLR Trigger: TCGGAGGTTCCCGATCGCCTGCAGCTTCCTCCGGCACAAAGCGAAGGTGCCTTCCCTAACCTCGCCCGCGTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CCA 72 bp | GCGCTGCGCATAACGAGGGACAGCTGCAGACTCCGGTaGAGTCGCAAGCCACCTCGCTGCATGCGAGAGTGG | + |
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Preference number: 6 (lower is better) Translates to: ALRITRDSCRLR*SRKPPRCMREW Trigger: CCACTCTCGCATGCAGCGAGGTGGCTTGCGACTCCACCGGAGTCTGCAGCTGTCCCTCGTTATGCGCAGCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CAA 72 bp | GAGGACGCGGGCGAGGTTAGGGAAGGCACCTTCGCTTaGTGCCGGAGGAAGCTGCAGGCGATCGGGAACCTC | + |
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Preference number: 6 (lower is better) Translates to: EDAGEVREGTFA*CRRKLQAIGNL Trigger: GAGGTTCCCGATCGCCTGCAGCTTCCTCCGGCACAAAGCGAAGGTGCCTTCCCTAACCTCGCCCGCGTCCTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CCA 72 bp | GCGGGTCCACAGTTCAGGAGACTGGAGAAGCGCCTTTaGAGGACGCGGGCGAGGTTAGGGAAGGCACCTTCG | + |
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Preference number: 6 (lower is better) Translates to: AGPQFRRLEKRL*RTRARLGKAPS Trigger: CGAAGGTGCCTTCCCTAACCTCGCCCGCGTCCTCCAAAGGCGCTTCTCCAGTCTCCTGAACTGTGGACCCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS TCA 72 bp | TGGCGGGAACTCGGGCTGGTGGGCTTCTACCTTGGCTaGGAGGTAGACCTCTCGAGCGCTGCGCATAACGAG | + |
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Preference number: 6 (lower is better) Translates to: WRELGLVGFYLG*EVDLSSAAHNE Trigger: CTCGTTATGCGCAGCGCTCGAGAGGTCTACCTCTCAGCCAAGGTAGAAGCCCACCAGCCCGAGTTCCCGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 72 bp | GCAGACTCCGGTGGAGTCGCAAGCCACCTCGCTGCATaGGAGAGTGGTACATCTTCCATACCGACAGAGTCA | + |
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Preference number: 6 (lower is better) Translates to: ADSGGVASHLAA*ESGTSSIPTES Trigger: TGACTCTGTCGGTATGGAAGATGTACCACTCTCGCATGCAGCGAGGTGGCTTGCGACTCCACCGGAGTCTGC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS GCA 72 bp | AGCTGCAGACTCCGGTGGAGTCGCAAGCCACCTCGCTaGATGCGAGAGTGGTACATCTTCCATACCGACAGA | + |
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Preference number: 6 (lower is better) Translates to: SCRLRWSRKPPR*MREWYIFHTDR Trigger: TCTGTCGGTATGGAAGATGTACCACTCTCGCATGCAGCGAGGTGGCTTGCGACTCCACCGGAGTCTGCAGCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CCA 72 bp | CGGTGGAGTCGCAAGCCACCTCGCTGCATGCGAGAGTaGTACATCTTCCATACCGACAGAGTCATGATGCGC | + |
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Preference number: 6 (lower is better) Translates to: RWSRKPPRCMRE*YIFHTDRVMMR Trigger: GCGCATCATGACTCTGTCGGTATGGAAGATGTACCACTCTCGCATGCAGCGAGGTGGCTTGCGACTCCACCG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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| CDS CAA 72 bp | CCTCCCCCTCCACCTCTTCTAGACGGGCCTTCTTGCTaGGTACCAGTCCGGCATCACTACCGTCGCTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: PPPPPLLDGPSC*VPVRHHYRRSN Trigger: ATTTGAGCGACGGTAGTGATGCCGGACTGGTACCAAGCAAGAAGGCCCGTCTAGAAGAGGTGGAGGGGGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060427.6 |
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