Pregenerated sensors for IDS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035847Ensembl transcript IDs: ENSMUST00000101509.9, ENSMUST00000130519.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAAAGAAGAGGGGACAAAGGCTTGAAGGACCAGGGAGGTAAGGATTaGCAAGGAGAGTCAGCCAAGGGAAGGGGTATTGTGGAGCCAGGG | + |
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Preference number: 1 (lower is better) Translates to: QRRGDKGLKDQGGKD*QGESAKGRGIVEPG Trigger: CCCTGGCTCCACAATACCCCTTCCCTTGGCTGACTCTCCTTGCCAATCCTTACCTCCCTGGTCCTTCAAGCCTTTGTCCCCTCTTCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR TCA 90 bp | CTCATTGTGGGCAAGTGCAGGACAGTAGGGACCTGCCAATCAGGGTaGACACATCTAGATCGAATCCAGGGCATCTCCGTCCAGTCTGCT | + |
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Preference number: 1 (lower is better) Translates to: LIVGKCRTVGTCQSG*THLDRIQGISVQSA Trigger: AGCAGACTGGACGGAGATGCCCTGGATTCGATCTAGATGTGTTCACCCTGATTGGCAGGTCCCTACTGTCCTGCACTTGCCCACAATGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR TCA 90 bp | GAGAGTCAGCCAAGGGAAGGGGTATTGTGGAGCCAGGGAAGACTCTaGCTGCTCAACGGAGGTCTTTCTAGACCCTTAGTAGGCACTGAC | + |
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Preference number: 1 (lower is better) Translates to: ESQPREGVLWSQGRL*LLNGGLSRPLVGTD Trigger: GTCAGTGCCTACTAAGGGTCTAGAAAGACCTCCGTTGAGCAGTCAGAGTCTTCCCTGGCTCCACAATACCCCTTCCCTTGGCTGACTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR TCA 90 bp | AAATACATAGAATGTTTATTTAGAAAGCTGTTGACTCCTGGTAATTaGACAGTTTTCACAATGTTAGAGGAAGGACTTCTGTCTGGTGAC | + |
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Preference number: 1 (lower is better) Translates to: KYIECLFRKLLTPGN*TVFTMLEEGLLSGD Trigger: GTCACCAGACAGAAGTCCTTCCTCTAACATTGTGAAAACTGTTCAATTACCAGGAGTCAACAGCTTTCTAAATAAACATTCTATGTATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR CAA 90 bp | AGAATGGCTGTGAAGGGGTTGGAGCAAAGAAGAGGGGACAAAGGCTaGAAGGACCAGGGAGGTAAGGATTGGCAAGGAGAGTCAGCCAAG | + |
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Preference number: 2 (lower is better) Translates to: RMAVKGLEQRRGDKG*KDQGGKDWQGESAK Trigger: CTTGGCTGACTCTCCTTGCCAATCCTTACCTCCCTGGTCCTTCAAGCCTTTGTCCCCTCTTCTTTGCTCCAACCCCTTCACAGCCATTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR CAA 90 bp | GAGAGCAGTAAAGATCAAGAACAAGGAAAGATGGGAGCAAAGCCTTaGCAAAAGTCAGTTTCAGAACAACAGACAAATCTACTCTACTAT | + |
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Preference number: 2 (lower is better) Translates to: ESSKDQEQGKMGAKP*QKSVSEQQTNLLYY Trigger: ATAGTAGAGTAGATTTGTCTGTTGTTCTGAAACTGACTTTTGCAAAGGCTTTGCTCCCATCTTTCCTTGTTCTTGATCTTTACTGCTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR TCA 72 bp | GGCAAGTGCAGGACAGTAGGGACCTGCCAATCAGGGTaGACACATCTAGATCGAATCCAGGGCATCTCCGTC | + |
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Preference number: 3 (lower is better) Translates to: GKCRTVGTCQSG*THLDRIQGISV Trigger: GACGGAGATGCCCTGGATTCGATCTAGATGTGTTCACCCTGATTGGCAGGTCCCTACTGTCCTGCACTTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR CCA 72 bp | GGGGACAAAGGCTTGAAGGACCAGGGAGGTAAGGATTaGCAAGGAGAGTCAGCCAAGGGAAGGGGTATTGTG | + |
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Preference number: 3 (lower is better) Translates to: GDKGLKDQGGKD*QGESAKGRGIV Trigger: CACAATACCCCTTCCCTTGGCTGACTCTCCTTGCCAATCCTTACCTCCCTGGTCCTTCAAGCCTTTGTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR CCA 72 bp | ATCGAATCCAGGGCATCTCCGTCCAGTCTGCTAGGATaGGAAGGTTCTAAGTGCGAAGTAAAACAGAAATTT | + |
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Preference number: 3 (lower is better) Translates to: IESRASPSSLLG*EGSKCEVKQKF Trigger: AAATTTCTGTTTTACTTCGCACTTAGAACCTTCCCATCCTAGCAGACTGGACGGAGATGCCCTGGATTCGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR TCA 72 bp | GAAGAGAAAACGGAGCTGTTTTTGATGACTTGGCACTaGGAAACTAGCCTATGGGAATACTTTGAAATACGT | + |
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Preference number: 3 (lower is better) Translates to: EEKTELFLMTWH*ETSLWEYFEIR Trigger: ACGTATTTCAAAGTATTCCCATAGGCTAGTTTCTCAGTGCCAAGTCATCAAAAACAGCTCCGTTTTCTCTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR TCA 72 bp | GAATGTTTATTTAGAAAGCTGTTGACTCCTGGTAATTaGACAGTTTTCACAATGTTAGAGGAAGGACTTCTG | + |
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Preference number: 3 (lower is better) Translates to: ECLFRKLLTPGN*TVFTMLEEGLL Trigger: CAGAAGTCCTTCCTCTAACATTGTGAAAACTGTTCAATTACCAGGAGTCAACAGCTTTCTAAATAAACATTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| 3UTR CAA 72 bp | TACTATAGGCCAGCTGGTAAAATCAACAATCTCTCTTaGAAATTTTACACACTTCAAAGTAGTGTCTTGACT | + |
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Preference number: 4 (lower is better) Translates to: YYRPAGKINNLS*KFYTLQSSVLT Trigger: AGTCAAGACACTACTTTGAAGTGTGTAAAATTTCAAAGAGAGATTGTTGATTTTACCAGCTGGCCTATAGTA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CCA 90 bp | GCCTGCATCCATCCAATCCGAGGCCGGATCAAAGGGGTCCCGGTATaGAAAGAGCTTCTGGCCTGCCGCAGGAAGTGGGGCCGTCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: ACIHPIRGRIKGVPV*KELLACRRKWGRPS Trigger: GGAAGGACGGCCCCACTTCCTGCGGCAGGCCAGAAGCTCTTTCCATACCGGGACCCCTTTGATCCGGCCTCGGATTGGATGGATGCAGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS GCA 90 bp | CGAGGCCGGATCAAAGGGGTCCCGGTATGGAAAGAGCTTCTGGCCTaGCGCAGGAAGTGGGGCCGTCCTTCCAGGGACATAGAGCATCAG | + |
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Preference number: 5 (lower is better) Translates to: RGRIKGVPVWKELLA*RRKWGRPSRDIEHQ Trigger: CTGATGCTCTATGTCCCTGGAAGGACGGCCCCACTTCCTGCGGCAGGCCAGAAGCTCTTTCCATACCGGGACCCCTTTGATCCGGCCTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CCA 90 bp | TGGGGCACCGAGGAGGAACTGGCAGTCCTGCAAGTCCAGCGAGCGTaGGGAAGAGAGATACAAGTTCTACGAGGTCCTCGGTGTGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: WGTEEELAVLQVQRA*GREIQVLRGPRCAC Trigger: GCAGGCACACCGAGGACCTCGTAGAACTTGTATCTCTCTTCCCCACGCTCGCTGGACTTGCAGGACTGCCAGTTCCTCCTCGGTGCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CCA 90 bp | GAAGATTCTGGCCTTCTCTGCAAAGCTCAACATGAAAAGAAGGGATaGGGCACCGAGGAGGAACTGGCAGTCCTGCAAGTCCAGCGAGCG | + |
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Preference number: 5 (lower is better) Translates to: EDSGLLCKAQHEKKG*GTEEELAVLQVQRA Trigger: CGCTCGCTGGACTTGCAGGACTGCCAGTTCCTCCTCGGTGCCCCATCCCTTCTTTTCATGTTGAGCTTTGCAGAGAAGGCCAGAATCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS GCA 90 bp | TTCTTCTGTGCTCTGTTTGTCAGGCAAGGTACCTTCAGGCACATCTaGCACATCGACAGGACAAAGCAGATTGGCGTGGAGTTTTCCATC | + |
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Preference number: 5 (lower is better) Translates to: FFCALFVRQGTFRHI*HIDRTKQIGVEFSI Trigger: GATGGAAAACTCCACGCCAATCTGCTTTGTCCTGTCGATGTGGCAGATGTGCCTGAAGGTACCTTGCCTGACAAACAGAGCACAGAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101509.9 ENSMUST00000130519.2 |
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| CDS TCA 90 bp | TTGCTGTACTTGGCCCATTCTCCGTGTTCACCTAGGGCCCATCCGTaGTCAGATGTGAAAGCAATAATTGTGTTGTGGGCTAGACGAAGA | + |
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Preference number: 5 (lower is better) Translates to: LLYLAHSPCSPRAHP*SDVKAIIVLWARRR Trigger: TCTTCGTCTAGCCCACAACACAATTATTGCTTTCACATCTGATCACGGATGGGCCCTAGGTGAACACGGAGAATGGGCCAAGTACAGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS TCA 90 bp | CGGATTTTCCGCTCAGCAAACAAGCAAAGAACTTCGCTAGGTAGCTaGAAACCTCTGCTTAGCAGCAACAGGTGTTCTTTCCAGGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: RIFRSANKQRTSLGS*KPLLSSNRCSFQEL Trigger: GAGCTCCTGGAAAGAACACCTGTTGCTGCTAAGCAGAGGTTTTCAGCTACCTAGCGAAGTTCTTTGCTTGTTTGCTGAGCGGAAAATCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130519.2 |
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| CDS CCA 90 bp | GTACTGGCTATAGGCGATCAACTCCCGGGGATTACCAAACAAGTCTaGCTCCTCTTCCAAGTCATGGAGCTGCAAATGCTTCTGAAGATT | + |
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Preference number: 5 (lower is better) Translates to: VLAIGDQLPGITKQV*LLFQVMELQMLLKI Trigger: AATCTTCAGAAGCATTTGCAGCTCCATGACTTGGAAGAGGAGCCAGACTTGTTTGGTAATCCCCGGGAGTTGATCGCCTATAGCCAGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS TCA 90 bp | GATATGCGGCTTGTGGTACCCAACTGCCAGGAAGAAAGGACTAGCTaGTGTCTTCATCTTTTCCAACAACCTGATGGCTTCTTCTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: DMRLVVPNCQEERTS*CLHLFQQPDGFFCA Trigger: AGCACAGAAGAAGCCATCAGGTTGTTGGAAAAGATGAAGACATCAGCTAGTCCTTTCTTCCTGGCAGTTGGGTACCACAAGCCGCATATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101509.9 ENSMUST00000130519.2 |
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| CDS CCA 90 bp | AAGACCTCCATGTTGGGAGTCATTATATACATTGTGATCCTGCAGTaGGTCAGAATCGACAAAATAGAGTTCCCCGGCATGGATATCAGA | + |
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Preference number: 5 (lower is better) Translates to: KTSMLGVIIYIVILQ*VRIDKIEFPGMDIR Trigger: TCTGATATCCATGCCGGGGAACTCTATTTTGTCGATTCTGACCCACTGCAGGATCACAATGTATATAATGACTCCCAACATGGAGGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CCA 72 bp | GCCGGATCAAAGGGGTCCCGGTATGGAAAGAGCTTCTaGCCTGCCGCAGGAAGTGGGGCCGTCCTTCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: AGSKGSRYGKSF*PAAGSGAVLPG Trigger: CCCTGGAAGGACGGCCCCACTTCCTGCGGCAGGCCAGAAGCTCTTTCCATACCGGGACCCCTTTGATCCGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS GCA 72 bp | AGAAGGGATGGGGCACCGAGGAGGAACTGGCAGTCCTaGAAGTCCAGCGAGCGTGGGGAAGAGAGATACAAG | + |
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Preference number: 6 (lower is better) Translates to: RRDGAPRRNWQS*KSSERGEERYK Trigger: CTTGTATCTCTCTTCCCCACGCTCGCTGGACTTGCAGGACTGCCAGTTCCTCCTCGGTGCCCCATCCCTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CCA 72 bp | GAGGAGGAACTGGCAGTCCTGCAAGTCCAGCGAGCGTaGGGAAGAGAGATACAAGTTCTACGAGGTCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: EEELAVLQVQRA*GREIQVLRGPR Trigger: CCGAGGACCTCGTAGAACTTGTATCTCTCTTCCCCACGCTCGCTGGACTTGCAGGACTGCCAGTTCCTCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CAA 72 bp | AGGGGCACACGGGTAGCAACATCAAAGTTGCTGTACTaGGCCCATTCTCCGTGTTCACCTAGGGCCCATCCG | + |
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Preference number: 6 (lower is better) Translates to: RGTRVATSKLLY*AHSPCSPRAHP Trigger: CGGATGGGCCCTAGGTGAACACGGAGAATGGGCCAAGTACAGCAACTTTGATGTTGCTACCCGTGTGCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CCA 72 bp | GGCCTTCTCTGCAAAGCTCAACATGAAAAGAAGGGATaGGGCACCGAGGAGGAACTGGCAGTCCTGCAAGTC | + |
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Preference number: 6 (lower is better) Translates to: GLLCKAQHEKKG*GTEEELAVLQV Trigger: GACTTGCAGGACTGCCAGTTCCTCCTCGGTGCCCCATCCCTTCTTTTCATGTTGAGCTTTGCAGAGAAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CAA 90 bp | TCATCCACAATGATCAGAAGGATGTTCAGAGCATCTGTAGCAGAGTaGCCTTGCGCTGCGGACTCCAGGGCGATGCAGAAGGAGCCTAGC | + |
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Preference number: 6 (lower is better) Translates to: SSTMIRRMFRASVAE*PCAADSRAMQKEPS Trigger: GCTAGGCTCCTTCTGCATCGCCCTGGAGTCCGCAGCGCAAGGCAACTCTGCTACAGATGCTCTGAACATCCTTCTGATCATTGTGGATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS GCA 72 bp | GCTCTGTTTGTCAGGCAAGGTACCTTCAGGCACATCTaGCACATCGACAGGACAAAGCAGATTGGCGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: ALFVRQGTFRHI*HIDRTKQIGVE Trigger: CTCCACGCCAATCTGCTTTGTCCTGTCGATGTGGCAGATGTGCCTGAAGGTACCTTGCCTGACAAACAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101509.9 ENSMUST00000130519.2 |
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| CDS CAA 72 bp | TCAGGCACATCTGCCACATCGACAGGACAAAGCAGATaGGCGTGGAGTTTTCCATCTTGTCCCTTACACGTC | + |
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Preference number: 6 (lower is better) Translates to: SGTSATSTGQSR*AWSFPSCPLHV Trigger: GACGTGTAAGGGACAAGATGGAAAACTCCACGCCAATCTGCTTTGTCCTGTCGATGTGGCAGATGTGCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101509.9 ENSMUST00000130519.2 |
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| CDS TCA 72 bp | TTGGCCCATTCTCCGTGTTCACCTAGGGCCCATCCGTaGTCAGATGTGAAAGCAATAATTGTGTTGTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: LAHSPCSPRAHP*SDVKAIIVLWA Trigger: AGCCCACAACACAATTATTGCTTTCACATCTGATCACGGATGGGCCCTAGGTGAACACGGAGAATGGGCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS GCA 72 bp | GGAGCTGCAAATGCTTCTGAAGATTCTGGCCTTCTCTaGAAAGCTCAACATGAAAAGAAGGGATGGGGCACC | + |
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Preference number: 6 (lower is better) Translates to: GAANASEDSGLL*KAQHEKKGWGT Trigger: GGTGCCCCATCCCTTCTTTTCATGTTGAGCTTTGCAGAGAAGGCCAGAATCTTCAGAAGCATTTGCAGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS CCA 72 bp | AATTCCTTGGGGTATCTGAAGGGGATATGCGGCTTGTaGTACCCAACTGCCAGGAAGAAAGGACTAGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: NSLGYLKGICGL*YPTARKKGLAD Trigger: ATCAGCTAGTCCTTTCTTCCTGGCAGTTGGGTACCACAAGCCGCATATCCCCTTCAGATACCCCAAGGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101509.9 ENSMUST00000130519.2 |
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| CDS CCA 72 bp | ATAGGCGATCAACTCCCGGGGATTACCAAACAAGTCTaGCTCCTCTTCCAAGTCATGGAGCTGCAAATGCTT | + |
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Preference number: 6 (lower is better) Translates to: IGDQLPGITKQV*LLFQVMELQML Trigger: AAGCATTTGCAGCTCCATGACTTGGAAGAGGAGCCAGACTTGTTTGGTAATCCCCGGGAGTTGATCGCCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101509.9 |
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| CDS TCA 72 bp | CTTGTGGTACCCAACTGCCAGGAAGAAAGGACTAGCTaGTGTCTTCATCTTTTCCAACAACCTGATGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: LVVPNCQEERTS*CLHLFQQPDGF Trigger: GAAGCCATCAGGTTGTTGGAAAAGATGAAGACATCAGCTAGTCCTTTCTTCCTGGCAGTTGGGTACCACAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101509.9 ENSMUST00000130519.2 |
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| CDS TCA 72 bp | CGCTCAGCAAACAAGCAAAGAACTTCGCTAGGTAGCTaGAAACCTCTGCTTAGCAGCAACAGGTGTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: RSANKQRTSLGS*KPLLSSNRCSF Trigger: GAAAGAACACCTGTTGCTGCTAAGCAGAGGTTTTCAGCTACCTAGCGAAGTTCTTTGCTTGTTTGCTGAGCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130519.2 |
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