Pregenerated sensors for ID4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021379Ensembl transcript IDs: ENSMUST00000021810.3
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTGGAGGGAAGAGGGCAGAAAATGTCCGTTTCCAAGAGTTTGTCCTTTGGTAGCGGGCTCCTGGCTCGCTaGTGCTCAGGCGGCCGCACA | + |
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Preference number: 2 (lower is better) Translates to: LEGRGQKMSVSKSLSFGSGLLAR*CSGGRT Trigger: TGTGCGGCCGCCTGAGCACCAGCGAGCCAGGAGCCC...GCTACCAAAGGACAAACTCTTGGAAACGGACATTTTCTGCCCTCTTCCCTCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR GCA 90 bp | AAGTTGACAACGAACTTGAGTAGGAATTGTACAATACCAAAGTCAGTTCTTTCACTCCTGGCTCGCTGGTaGTCAGGCGGCCGCACACCT | + |
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Preference number: 2 (lower is better) Translates to: KLTTNLSRNCTIPKSVLSLLARW*SGGRTP Trigger: AGGTGTGCGGCCGCCTGAGCACCAGCGAGCCAGGAG...TGAAAGAACTGACTTTGGTATTGTACAATTCCTACTCAAGTTCGTTGTCAACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR CCA 90 bp | AAGTTGACAACGAACTTGAGTAGGAATTGTACAATACCAAAGTCAGTTCTTTCAGGGCAAGCCCTGGGGTaGGAGGTGGACAGAATCGCA | + |
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Preference number: 2 (lower is better) Translates to: KLTTNLSRNCTIPKSVLSGQALG*EVDRIA Trigger: TGCGATTCTGTCCACCTCCCACCCCAGGGCTTGCCC...TGAAAGAACTGACTTTGGTATTGTACAATTCCTACTCAAGTTCGTTGTCAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR TCA 90 bp | TTAAAGGTCCAAGCATTTCTCCATCCTATATGCGAATTCACTCAGAATCTATTTGAGAGCTGTTACCTCTaGGCCTCAGAAACTGGATAC | + |
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Preference number: 2 (lower is better) Translates to: LKVQAFLHPICEFTQNLFESCYL*ASETGY Trigger: GTATCCAGTTTCTGAGGCTCAGAGGTAACAGCTCTC...AAATAGATTCTGAGTGAATTCGCATATAGGATGGAGAAATGCTTGGACCTTTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR TCA 90 bp | AAGTTGACAACGAACTTGAGTAGGAATTGTACAATACCAAAGTCAGTTCTTTCACTCTCTCTCTTGGAATaGCAAGACGAGACGACGTTT | + |
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Preference number: 2 (lower is better) Translates to: KLTTNLSRNCTIPKSVLSLSLLE*QDETTF Trigger: AAACGTCGTCTCGTCTTGTCATTCCAAGAGAGAGAG...TGAAAGAACTGACTTTGGTATTGTACAATTCCTACTCAAGTTCGTTGTCAACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR CCA 90 bp | TTCTGTAGACTTCTTAAAGGTCCAAGCATTTCTCCATCCTATATGCGAATTCACACCAAATCAACAGCCTaGCCAAACAGAAAACATCCA | + |
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Preference number: 2 (lower is better) Translates to: FCRLLKGPSISPSYMRIHTKSTA*PNRKHP Trigger: TGGATGTTTTCTGTTTGGCCAGGCTGTTGATTTGGT...GTGAATTCGCATATAGGATGGAGAAATGCTTGGACCTTTAAGAAGTCTACAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR CAA 90 bp | TATTCTTTGGAGGGAAGAGGGCAGAAAATGTCCGTTTCCAAGAGTTaGTCCTTTGGTAGCAAGCAGAGAACATTTTTCATTTCTATGATT | + |
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Preference number: 2 (lower is better) Translates to: YSLEGRGQKMSVSKS*SFGSKQRTFFISMI Trigger: AATCATAGAAATGAAAAATGTTCTCTGCTTGCTACCAAAGGACAAACTCTTGGAAACGGACATTTTCTGCCCTCTTCCCTCCAAAGAATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR TCA 90 bp | TATAAGGTTCAACACCAAATTCTAAATAGACTGGAGACCAGGGAAGGAGATGAGGGTTTATTTTGTGATTaGACACCTCATGCAATCATG | + |
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Preference number: 2 (lower is better) Translates to: YKVQHQILNRLETREGDEGLFCD*TPHAIM Trigger: CATGATTGCATGAGGTGTTCAATCACAAAATAAACC...CTCATCTCCTTCCCTGGTCTCCAGTCTATTTAGAATTTGGTGTTGAACCTTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR GCA 90 bp | AAGTTGACAACGAACTTGAGTAGGAATTGTACAATACCAAAGTCAGTTCTTTCAGTTTCTCTTAATTTCTaGTCTGGCCCTCCCTTCCTA | + |
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Preference number: 2 (lower is better) Translates to: KLTTNLSRNCTIPKSVLSVSLNF*SGPPFL Trigger: TAGGAAGGGAGGGCCAGAGCAGAAATTAAGAGAAAC...TGAAAGAACTGACTTTGGTATTGTACAATTCCTACTCAAGTTCGTTGTCAACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR CCA 90 bp | AAGTTGACAACGAACTTGAGTAGGAATTGTACAATACCAAAGTCAGTTCTTTCACTGAGCCTCAGAAACTaGATACTGGGCAAAACAAAA | + |
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Preference number: 2 (lower is better) Translates to: KLTTNLSRNCTIPKSVLSLSLRN*ILGKTK Trigger: TTTTGTTTTGCCCAGTATCCAGTTTCTGAGGCTCAG...TGAAAGAACTGACTTTGGTATTGTACAATTCCTACTCAAGTTCGTTGTCAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR GCA 90 bp | AAGTTGACAACGAACTTGAGTAGGAATTGTACAATACCAAAGTCAGTTCTTTCATTTCTCCATCCTATATaGGAATTCACTCAGAATCTA | + |
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Preference number: 2 (lower is better) Translates to: KLTTNLSRNCTIPKSVLSFLHPI*EFTQNL Trigger: TAGATTCTGAGTGAATTCGCATATAGGATGGAGAAA...TGAAAGAACTGACTTTGGTATTGTACAATTCCTACTCAAGTTCGTTGTCAACTT 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR GCA 72 bp | TCTGGCCCTCCCTTCCTAGGGCTCCTGGCTCGCTGGTaGTCAGGCGGCCGCACACCTGGCCATCCATCGCAG | + |
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Preference number: 3 (lower is better) Translates to: SGPPFLGLLARW*SGGRTPGHPSQ Trigger: CTGCGATGGATGGCCAGGTGTGCGGCCGCCTGAGCACCAGCGAGCCAGGAGCCCTAGGAAGGGAGGGCCAGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR CCA 72 bp | TGCTCTGGCCCTCCCTTCCTAGGGCTCCTGGCTCGCTaGTGCTCAGGCGGCCGCACACCTGGCCATCCATCG | + |
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Preference number: 3 (lower is better) Translates to: CSGPPFLGLLAR*CSGGRTPGHPS Trigger: CGATGGATGGCCAGGTGTGCGGCCGCCTGAGCACCAGCGAGCCAGGAGCCCTAGGAAGGGAGGGCCAGAGCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR CAA 90 bp | TTGGAGGGAAGAGGGCAGAAAATGTCCGTTTCCAAGAGTTTGTCCTTTGGTAGCGCGAGCATTTTCACTTaGAAAAGACAGCAGTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: LEGRGQKMSVSKSLSFGSASIFT*KRQQFC Trigger: ACAGAACTGCTGTCTTTTCAAAGTGAAAATGCTCGC...GCTACCAAAGGACAAACTCTTGGAAACGGACATTTTCTGCCCTCTTCCCTCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR TCA 72 bp | AATCATGCAAGACCAGTACCAGAGAGCTGTTACCTCTaGGCCTCAGAAACTGGATACTGGGCAAAACAAAAC | + |
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Preference number: 3 (lower is better) Translates to: NHARPVPESCYL*ASETGYWAKQN Trigger: GTTTTGTTTTGCCCAGTATCCAGTTTCTGAGGCTCAGAGGTAACAGCTCTCTGGTACTGGTCTTGCATGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR GCA 72 bp | CTGGTTTATTTTGTGATTGAACACCTCATGCAATCATaGAAGACCAGTACCAGAGAGCTGTTACCTCTGAGC | + |
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Preference number: 3 (lower is better) Translates to: LVYFVIEHLMQS*KTSTRELLPLS Trigger: GCTCAGAGGTAACAGCTCTCTGGTACTGGTCTTGCATGATTGCATGAGGTGTTCAATCACAAAATAAACCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR GCA 72 bp | CAGCAGTGGTTGTATTTCTTTAGAGATGTCAACTGCTaGTTCAGAGGGCCAAGGAAAAAGTATCAACTCTCA | + |
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Preference number: 3 (lower is better) Translates to: QQWLYFFRDVNC*FRGPRKKYQLS Trigger: TGAGAGTTGATACTTTTTCCTTGGCCCTCTGAAGCAGCAGTTGACATCTCTAAAGAAATACAACCACTGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR CCA 72 bp | AGGTTGGATTCACGATTGCTCTTCTACTTAGCAGTCTaGTCGACAACACTTAAGCTTCGAAGTTTAACTGCA | + |
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Preference number: 3 (lower is better) Translates to: RLDSRLLFYLAV*STTLKLRSLTA Trigger: TGCAGTTAAACTTCGAAGCTTAAGTGTTGTCGACCAGACTGCTAAGTAGAAGAGCAATCGTGAATCCAACCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR CAA 90 bp | CAGAATCGCACAGGTTTTATAGAAACCCTCCATGAATTTTTAACCTCGCACTCACTTTCCTCCGGTGGCTaGTTTCTCTTAATTTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: QNRTGFIETLHEFLTSHSLSSGG*FLLISA Trigger: AGCAGAAATTAAGAGAAACAAGCCACCGGAGGAAAG...TGAGTGCGAGGTTAAAAATTCATGGAGGGTTTCTATAAAACCTGTGCGATTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR CAA 90 bp | GTCCAAGCATTTCTCCATCCTATATGCGAATTCACTCAGAATCTATTTTTGACCAGGTTGGATTCACGATaGCTCTTCTACTTAGCAGTC | + |
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Preference number: 3 (lower is better) Translates to: VQAFLHPICEFTQNLFLTRLDSR*LFYLAV Trigger: GACTGCTAAGTAGAAGAGCAATCGTGAATCCAACCT...GGTCAAAAATAGATTCTGAGTGAATTCGCATATAGGATGGAGAAATGCTTGGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR TCA 72 bp | CATTTGAAAGGACTCGTAACTGGTTTATTTTGTGATTaGACACCTCATGCAATCATGCAAGACCAGTACCAG | + |
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Preference number: 3 (lower is better) Translates to: HLKGLVTGLFCD*TPHAIMQDQYQ Trigger: CTGGTACTGGTCTTGCATGATTGCATGAGGTGTTCAATCACAAAATAAACCAGTTACGAGTCCTTTCAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR TCA 72 bp | ATCCGGAATTCCATCAGTGATCTAGTGCTTTCTTCCTaGTGCACGAGTAGTATGAGCAATATAAAACAACCA | + |
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Preference number: 3 (lower is better) Translates to: IRNSISDLVLSS*CTSSMSNIKQP Trigger: TGGTTGTTTTATATTGCTCATACTACTCGTGCATCAGGAAGAAAGCACTAGATCACTGATGGAATTCCGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR-3UTR CAA 90 bp | CAGAATCGCACAGGTTTTATAGAAACCCTCCATGAATTTTTAACCTCGCACTCATTAAAGAAAGCACATTaGAAAGGACTCGTAACTGGT | + |
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Preference number: 3 (lower is better) Translates to: QNRTGFIETLHEFLTSHSLKKAH*KGLVTG Trigger: ACCAGTTACGAGTCCTTTCAAATGTGCTTTCTTTAA...TGAGTGCGAGGTTAAAAATTCATGGAGGGTTTCTATAAAACCTGTGCGATTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR TCA 72 bp | AGCACATTTGAAAGGACTCGTAACTGGTTTATTTTGTaGTTGAACACCTCATGCAATCATGCAAGACCAGTA | + |
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Preference number: 3 (lower is better) Translates to: STFERTRNWFIL*LNTSCNHARPV Trigger: TACTGGTCTTGCATGATTGCATGAGGTGTTCAATCACAAAATAAACCAGTTACGAGTCCTTTCAAATGTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR TCA 72 bp | ACAACCAAGCACAAACCTCATCCAAAAGCGGCCCTTTaGCTTTATAAGGTTCAACACCAAATTCTAAATAGA | + |
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Preference number: 3 (lower is better) Translates to: TTKHKPHPKAAL*LYKVQHQILNR Trigger: TCTATTTAGAATTTGGTGTTGAACCTTATAAAGTCAAAGGGCCGCTTTTGGATGAGGTTTGTGCTTGGTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR GCA 72 bp | GACTTCTTAAAGGTCCAAGCATTTCTCCATCCTATATaGGAATTCACTCAGAATCTATTTTTGACCTCAGTT | + |
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Preference number: 3 (lower is better) Translates to: DFLKVQAFLHPI*EFTQNLFLTSV Trigger: AACTGAGGTCAAAAATAGATTCTGAGTGAATTCGCATATAGGATGGAGAAATGCTTGGACCTTTAAGAAGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR CCA 90 bp | TTGGAGGGAAGAGGGCAGAAAATGTCCGTTTCCAAGAGTTTGTCCTTTGGTAGCAGGTGGCGCGGGCGGTaGCGGCTGTCTCAGCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: LEGRGQKMSVSKSLSFGSRWRGR*RLSQQS Trigger: GCTTTGCTGAGACAGCCGCCACCGCCCGCGCCACCT...GCTACCAAAGGACAAACTCTTGGAAACGGACATTTTCTGCCCTCTTCCCTCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR GCA 90 bp | CAAGACCAGTACCAGAGAGCTGTTACCTCTGAGCCTCAGAAACTGGATACTGGGAGAATGCTGTCACCCTaGTTGTTCACGGCGCCGGCC | + |
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Preference number: 4 (lower is better) Translates to: QDQYQRAVTSEPQKLDTGRMLSP*LFTAPA Trigger: GGCCGGCGCCGTGAACAAGCAGGGTGACAGCATTCT...CCCAGTATCCAGTTTCTGAGGCTCAGAGGTAACAGCTCTCTGGTACTGGTCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR GCA 90 bp | AACGTACAATTCACAGCGGTCATAAAAGAAGAAACGAAAGAGAATACGTACGGTCCCAGGCTGTGGCCGTaGTCCGCCAGGCAGCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: NVQFTAVIKEETKENTYGPRLWP*SARQRS Trigger: GCTACGCTGCCTGGCGGAGCACGGCCACAGCCTGGG...ACCGTACGTATTCTCTTTCGTTTCTTCTTTTATGACCGCTGTGAATTGTACGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR CCA 90 bp | GTCCAAGCATTTCTCCATCCTATATGCGAATTCACTCAGAATCTATTTTTGACCGAGCCACCCAGGCTGTaGCCGTGCTCCGCCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: VQAFLHPICEFTQNLFLTEPPRL*PCSARQ Trigger: CTGCCTGGCGGAGCACGGCCACAGCCTGGGTGGCTC...GGTCAAAAATAGATTCTGAGTGAATTCGCATATAGGATGGAGAAATGCTTGGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR CCA 90 bp | TTAAAGGTCCAAGCATTTCTCCATCCTATATGCGAATTCACTCAGAATCTATTTGTTGAGCGCGGTGAGTaGGGTCCGCGGCGGCGCGAC | + |
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Preference number: 4 (lower is better) Translates to: LKVQAFLHPICEFTQNLFVERGE*GPRRRD Trigger: GTCGCGCCGCCGCGGACCCCACTCACCGCGCTCAAC...AAATAGATTCTGAGTGAATTCGCATATAGGATGGAGAAATGCTTGGACCTTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR GCA 90 bp | TATAAGGTTCAACACCAAATTCTAAATAGACTGGAGACCAGGGAAGGAGATGAGTCGTTCATATCGCACTaGAGGCACAGCGCCGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: YKVQHQILNRLETREGDESFISH*RHSAGS Trigger: TGAGCCGGCGCTGTGCCTGCAGTGCGATATGAACGA...CTCATCTCCTTCCCTGGTCTCCAGTCTATTTAGAATTTGGTGTTGAACCTTATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR CAA 72 bp | AGGATACTTGTTGTCTTGTCATTTAATCAGCAGTGGTaGTATTTCTTTAGAGATGTCAACTGCTGCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: RILVVLSFNQQW*YFFRDVNCCFR Trigger: TCTGAAGCAGCAGTTGACATCTCTAAAGAAATACAACCACTGCTGATTAAATGACAAGACAACAAGTATCCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| 3UTR CAA 72 bp | GAAAGTAGCATCTTCTACAACTACATAGGATACTTGTaGTCTTGTCATTTAATCAGCAGTGGTTGTATTTCT | + |
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Preference number: 4 (lower is better) Translates to: ESSIFYNYIGYL*SCHLISSGCIS Trigger: AGAAATACAACCACTGCTGATTAAATGACAAGACAACAAGTATCCTATGTAGTTGTAGAAGATGCTACTTTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS CCA 90 bp | GTGAGTGGGGTCCGCGGCGGCGCGACCGGACAAGCCCCGGCCGGGTaGAGAGGTGGCGCGGGCGGTGGCGGCTGTCTCAGCAAAGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: VSGVRGGATGQAPAG*RGGAGGGGCLSKAG Trigger: CCCTGCTTTGCTGAGACAGCCGCCACCGCCCGCGCCACCTCTCCACCCGGCCGGGGCTTGTCCGGTCGCGCCGCCGCGGACCCCACTCAC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS CCA 90 bp | CTGCTTGTTCACGGCGCCGGCCGGGTCAGTGTTGAGCGCGGTGAGTaGGGTCCGCGGCGGCGCGACCGGACAAGCCCCGGCCGGGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LLVHGAGRVSVERGE*GPRRRDRTSPGRVE Trigger: CTCCACCCGGCCGGGGCTTGTCCGGTCGCGCCGCCGCGGACCCCACTCACCGCGCTCAACACTGACCCGGCCGGCGCCGTGAACAAGCAG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR CAA 90 bp | CAGAATCGCACAGGTTTTATAGAAACCCTCCATGAATTTTTAACCTCGCACTCAATGCTGTCACCCTGCTaGTTCACGGCGCCGGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: QNRTGFIETLHEFLTSHSMLSPC*FTAPAG Trigger: CCCGGCCGGCGCCGTGAACAAGCAGGGTGACAGCAT...TGAGTGCGAGGTTAAAAATTCATGGAGGGTTTCTATAAAACCTGTGCGATTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR CAA 90 bp | CAAGACCAGTACCAGAGAGCTGTTACCTCTGAGCCTCAGAAACTGGATACTGGGTGCAGGATCTCCACTTaGCTGACTTTCTTGTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: QDQYQRAVTSEPQKLDTGCRIST*LTFLLG Trigger: GCCCAACAAGAAAGTCAGCAAAGTGGAGATCCTGCA...CCCAGTATCCAGTTTCTGAGGCTCAGAGGTAACAGCTCTCTGGTACTGGTCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS-3UTR CAA 90 bp | TTGGAGGGAAGAGGGCAGAAAATGTCCGTTTCCAAGAGTTTGTCCTTTGGTAGCACTTTGCTGACTTTCTaGTTGGGCGGGATGGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: LEGRGQKMSVSKSLSFGSTLLTF*LGGMVG Trigger: GCCTACCATCCCGCCCAACAAGAAAGTCAGCAAAGT...GCTACCAAAGGACAAACTCTTGGAAACGGACATTTTCTGCCCTCTTCCCTCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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| CDS CCA 72 bp | CACGGCGCCGGCCGGGTCAGTGTTGAGCGCGGTGAGTaGGGTCCGCGGCGGCGCGACCGGACAAGCCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: HGAGRVSVERGE*GPRRRDRTSPG Trigger: GCCGGGGCTTGTCCGGTCGCGCCGCCGCGGACCCCACTCACCGCGCTCAACACTGACCCGGCCGGCGCCGTG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021810.3 |
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