Pregenerated sensors for ID3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007872Ensembl transcript IDs: ENSMUST00000008016.3
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCTGGGTTAAGATCGAAGCTCATCCATGCCCTCAGGCTTCCGGCTaGAGAGAGGGTCCCAGAGTCCCAGGGTCCCAAGCGGAACGGGCG | + |
|
Preference number: 1 (lower is better) Translates to: GWVKIEAHPCPQASG*REGPRVPGSQAERA Trigger: CGCCCGTTCCGCTTGGGACCCTGGGACTCTGGGACCCTCTCTCCAGCCGGAAGCCTGAGGGCATGGATGAGCTTCGATCTTAACCCAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| 3UTR GCA 90 bp | TTCAGGGTAAGTGAAGAGGGCTGGGTTAAGATCGAAGCTCATCCATaGCCTCAGGCTTCCGGCTGGAGAGAGGGTCCCAGAGTCCCAGGG | + |
|
Preference number: 1 (lower is better) Translates to: FRVSEEGWVKIEAHP*PQASGWREGPRVPG Trigger: CCCTGGGACTCTGGGACCCTCTCTCCAGCCGGAAGCCTGAGGGCATGGATGAGCTTCGATCTTAACCCAGCCCTCTTCACTTACCCTGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| 3UTR-3UTR CCA 90 bp | AGGGCAGCAGAGCTTTTCTCCAAGGAAACCAGAAGAACAGCTCTTATGCTGCCTAGACTTGAGTCAGGGTaGGGACAGAGTGACGTTGCC | + |
|
Preference number: 2 (lower is better) Translates to: RAAELFSKETRRTALMLPRLESG*GQSDVA Trigger: GGCAACGTCACTCTGTCCCCACCCTGACTCAAGTCT...AGGCAGCATAAGAGCTGTTCTTCTGGTTTCCTTGGAGAAAAGCTCTGCTGCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| 3UTR CCA 72 bp | AAGATCGAAGCTCATCCATGCCCTCAGGCTTCCGGCTaGAGAGAGGGTCCCAGAGTCCCAGGGTCCCAAGCG | + |
|
Preference number: 3 (lower is better) Translates to: KIEAHPCPQASG*REGPRVPGSQA Trigger: CGCTTGGGACCCTGGGACTCTGGGACCCTCTCTCCAGCCGGAAGCCTGAGGGCATGGATGAGCTTCGATCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| 3UTR GCA 72 bp | AGTGAAGAGGGCTGGGTTAAGATCGAAGCTCATCCATaGCCTCAGGCTTCCGGCTGGAGAGAGGGTCCCAGA | + |
|
Preference number: 3 (lower is better) Translates to: SEEGWVKIEAHP*PQASGWREGPR Trigger: TCTGGGACCCTCTCTCCAGCCGGAAGCCTGAGGGCATGGATGAGCTTCGATCTTAACCCAGCCCTCTTCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| 3UTR CCA 72 bp | TCTCGGAAAAGCCAGTCTTTTAGACTTGAGTCAGGGTaGGGACAGAGTGACGTTGCCCAGCTGCTGACCAGC | + |
|
Preference number: 3 (lower is better) Translates to: SRKSQSFRLESG*GQSDVAQLLTS Trigger: GCTGGTCAGCAGCTGGGCAACGTCACTCTGTCCCCACCCTGACTCAAGTCTAAAAGACTGGCTTTTCCGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| 3UTR GCA 72 bp | TTTTCTCCAAGGAAACCAGAAGAACAGCTCTTATGCTaGCTTGGCAGAGTGCGCAGGGCAGCCACTCGCATC | + |
|
Preference number: 3 (lower is better) Translates to: FSPRKPEEQLLC*LGRVRRAATRI Trigger: GATGCGAGTGGCTGCCCTGCGCACTCTGCCAAGGCAGCATAAGAGCTGTTCTTCTGGTTTCCTTGGAGAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| 3UTR-3UTR CAA 90 bp | GCAGAGCTTTTCTCCAAGGAAACCAGAAGAACAGCTCTTATGCTGCCTTGGCAGGCCAGTCTTTTAGACTaGAGTCAGGGTGGGGACAGA | + |
|
Preference number: 3 (lower is better) Translates to: AELFSKETRRTALMLPWQASLLD*SQGGDR Trigger: TCTGTCCCCACCCTGACTCAAGTCTAAAAGACTGGC...CTGCCAAGGCAGCATAAGAGCTGTTCTTCTGGTTTCCTTGGAGAAAAGCTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| CDS-3UTR TCA 90 bp | AGAGTCCCAGGGTCCCAAGCGGAACGGGCGCCAGCACCTGCGTTCGGGAGGTGCTCCACCTGGCTAAGCTaGGTGCCTCGCGGGACTCCC | + |
|
Preference number: 4 (lower is better) Translates to: RVPGSQAERAPAPAFGRCSTWLS*VPRGTP Trigger: GGGAGTCCCGCGAGGCACTCAGCTTAGCCAGGTGGA...GCACCTCCCGAACGCAGGTGCTGGCGCCCGTTCCGCTTGGGACCCTGGGACTCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| CDS-3UTR TCA 90 bp | AGAGCTTTTCTCCAAGGAAACCAGAAGAACAGCTCTTATGCTGCCTTGGCAGAGTCACAAGTTCCGGAGTaGGCTCAGCTGTCTGGATCG | + |
|
Preference number: 4 (lower is better) Translates to: RAFLQGNQKNSSYAALAESQVPE*AQLSGS Trigger: CGATCCAGACAGCTGAGCTCACTCCGGAACTTGTGA...CTCTGCCAAGGCAGCATAAGAGCTGTTCTTCTGGTTTCCTTGGAGAAAAGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| CDS GCA 90 bp | CTGGATCGGGAGATGCGGACCGTCCGGGGGTCCAGGCGCCGGCTCTaGCAGGACCACCTGAAGGTCGAGGATGTAGTCTATGACACGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LDREMRTVRGSRRRL*QDHLKVEDVVYDTL Trigger: CAGCGTGTCATAGACTACATCCTCGACCTTCAGGTGGTCCTGGCAGAGCCGGCGCCTGGACCCCCGGACGGTCCGCATCTCCCGATCCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| CDS CCA 90 bp | CTCTTGTCCTTGGAGATCACAAGTTCCGGAGTGAGCTCAGCTGTCTaGATCGGGAGATGCGGACCGTCCGGGGGTCCAGGCGCCGGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: LLSLEITSSGVSSAV*IGRCGPSGGPGAGS Trigger: AGAGCCGGCGCCTGGACCCCCGGACGGTCCGCATCTCCCGATCCAGACAGCTGAGCTCACTCCGGAACTTGTGATCTCCAAGGACAAGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| CDS CCA 72 bp | CCTCGGTCGACGGGCTCTTACCGCGGCCTCGCGCAATaGCCAGGCTACGTTCCGACAGGCAGCACACCGCCT | + |
|
Preference number: 6 (lower is better) Translates to: PRSTGSYRGLAQ*PGYVPTGSTPP Trigger: AGGCGGTGTGCTGCCTGTCGGAACGTAGCCTGGCCATTGCGCGAGGCCGCGGTAAGAGCCCGTCGACCGAGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||
| CDS TCA 72 bp | TCTATGACACGCTGCAGGATTTCCACCTGGCTAAGCTaGGTGCCTCGCGGGACTCCCGGCACCAGTTCCCGC | + |
|
Preference number: 6 (lower is better) Translates to: SMTRCRISTWLS*VPRGTPGTSSR Trigger: GCGGGAACTGGTGCCGGGAGTCCCGCGAGGCACTCAGCTTAGCCAGGTGGAAATCCTGCAGCGTGTCATAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008016.3 |
||