Pregenerated sensors for ICOS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026009Ensembl transcript IDs: ENSMUST00000027162.12, ENSMUST00000102827.4
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGCTTGTCCCAGGCATCTCCCAACTCTGGGACTCCAGCGTAGCCTaGAGTGCTGCTCCAGGGGGACTACTTCAACCTGTCAAACCCAGA | + |
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Preference number: 1 (lower is better) Translates to: QLVPGISQLWDSSVA*SAAPGGLLQPVKPR Trigger: TCTGGGTTTGACAGGTTGAAGTAGTCCCCCTGGAGCAGCACTCCAGGCTACGCTGGAGTCCCAGAGTTGGGAGATGCCTGGGACAAGCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR TCA 90 bp | CTTGGGGAATGCCCTAACAAAGCCAGTCAGACTGCCCGGGTCATCTaGAGAGAGAGAACACCATACTTGATTCAAATTACACGTTCAGTA | + |
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Preference number: 1 (lower is better) Translates to: LGECPNKASQTARVI*RERTPYLIQITRSV Trigger: TACTGAACGTGTAATTTGAATCAAGTATGGTGTTCTCTCTCTTCAGATGACCCGGGCAGTCTGACTGGCTTTGTTAGGGCATTCCCCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR TCA 90 bp | CCAGTCAGACTGCCCGGGTCATCTGAAGAGAGAGAACACCATACTTaGTTCAAATTACACGTTCAGTACTGTACTGTACATAGCCAGCAT | + |
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Preference number: 1 (lower is better) Translates to: PVRLPGSSEEREHHT*FKLHVQYCTVHSQH Trigger: ATGCTGGCTATGTACAGTACAGTACTGAACGTGTAATTTGAATCAAGTATGGTGTTCTCTCTCTTCAGATGACCCGGGCAGTCTGACTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 90 bp | ATCCCTTTACAATGGAGAAGCTTGACAGGAGATGAAAACAAACACTaGCAGTTACTTGGCAAACCAAAATGTGAGCCGCCCTATAGGGCA | + |
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Preference number: 1 (lower is better) Translates to: IPLQWRSLTGDENKH*QLLGKPKCEPPYRA Trigger: TGCCCTATAGGGCGGCTCACATTTTGGTTTGCCAAGTAACTGCCAGTGTTTGTTTTCATCTCCTGTCAAGCTTCTCCATTGTAAAGGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 90 bp | AATTTTGTTCTTCAAGAAGTCATTGTTAGGTGTTCGTGTTGGGAATaGGGATCCTTCAAGGAACAGAGTAAAGCACCTTCACCCTCACAC | + |
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Preference number: 1 (lower is better) Translates to: NFVLQEVIVRCSCWE*GSFKEQSKAPSPSH Trigger: GTGTGAGGGTGAAGGTGCTTTACTCTGTTCCTTGAAGGATCCCCATTCCCAACACGAACACCTAACAATGACTTCTTGAAGAACAAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR TCA 90 bp | AGAAAGAATGCTGATCTCCATGGAAAGAAAATGGAATCTGAAAAATaGGGACAGATGGTGGCCATTGGCTGCCTGTGTGCTTTACAGATT | + |
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Preference number: 1 (lower is better) Translates to: RKNADLHGKKMESEK*GQMVAIGCLCALQI Trigger: AATCTGTAAAGCACACAGGCAGCCAATGGCCACCATCTGTCCTCATTTTTCAGATTCCATTTTCTTTCCATGGAGATCAGCATTCTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR GCA 90 bp | CACTTCTTCACCCCCAGAAAACACAGCAAGGTTATAGCCCATTGCTaGACACAAGTGCTTAGCCTTTACTTTGTATTATTGCTAACATCT | + |
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Preference number: 1 (lower is better) Translates to: HFFTPRKHSKVIAHC*TQVLSLYFVLLLTS Trigger: AGATGTTAGCAATAATACAAAGTAAAGGCTAAGCACTTGTGTGCAGCAATGGGCTATAACCTTGCTGTGTTTTCTGGGGGTGAAGAAGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 90 bp | TACTGTCTGATTCTAGAAAGAATGCTGATCTCCATGGAAAGAAAATaGAATCTGAAAAATGAGGACAGATGGTGGCCATTGGCTGCCTGT | + |
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Preference number: 1 (lower is better) Translates to: YCLILERMLISMERK*NLKNEDRWWPLAAC Trigger: ACAGGCAGCCAATGGCCACCATCTGTCCTCATTTTTCAGATTCCATTTTCTTTCCATGGAGATCAGCATTCTTTCTAGAATCAGACAGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR TCA 90 bp | TTGCCCATTAACAGAGGGTTGCTTTCCTTGCTTGCAACTTTAATATaGTCTACAAAAATAGCTAAGCTTGTGATTAATAGCACCATGGAA | + |
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Preference number: 1 (lower is better) Translates to: LPINRGLLSLLATLI*STKIAKLVINSTME Trigger: TTCCATGGTGCTATTAATCACAAGCTTAGCTATTTTTGTAGATCATATTAAAGTTGCAAGCAAGGAAAGCAACCCTCTGTTAATGGGCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR TCA 90 bp | GCCCTACTGTACTTCCCAGATCCCAGAGACCAAAGCAGCAGCTTGTCCCAGGCAGTGAGGTCTGTTTGTTaGATATATATGAGCTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: ALLYFPDPRDQSSSLSQAVRSVC*IYMSWV Trigger: GACCCAGCTCATATATATTCAACAAACAGACCTCAC...TGCCTGGGACAAGCTGCTGCTTTGGTCTCTGGGATCTGGGAAGTACAGTAGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR GCA 90 bp | CCAAAATGTGAGCCGCCCTATAGGGCACAACACCACTTCTGTGTTATTTCTGCTAGGGGAACTAGTCCATaGGTTTCCTCTGTGGGTCCG | + |
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Preference number: 2 (lower is better) Translates to: PKCEPPYRAQHHFCVISARGTSP*VSSVGP Trigger: CGGACCCACAGAGGAAACGCATGGACTAGTTCCCCT...AGCAGAAATAACACAGAAGTGGTGTTGTGCCCTATAGGGCGGCTCACATTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR GCA 90 bp | AGTGCTGCTCCAGGGGGACTACTTCAACCTGTCAAACCCAGAGAGAGCAAAGTGATGGTGGCCATTGGCTaGCTGTGTGCTTTACAGATT | + |
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Preference number: 2 (lower is better) Translates to: SAAPGGLLQPVKPRESKVMVAIG*LCALQI Trigger: AATCTGTAAAGCACACAGGCAGCCAATGGCCACCAT...CACTTTGCTCTCTCTGGGTTTGACAGGTTGAAGTAGTCCCCCTGGAGCAGCACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR GCA 90 bp | CCAAAATGTGAGCCGCCCTATAGGGCACAACACCACTTCTGTGTTATTTCTGCTGGAGTGGCAGCAGGCTaGCAAGTAGACATGTGGACA | + |
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Preference number: 2 (lower is better) Translates to: PKCEPPYRAQHHFCVISAGVAAG*QVDMWT Trigger: TGTCCACATGTCTACTTGGCAGCCTGCTGCCACTCC...AGCAGAAATAACACAGAAGTGGTGTTGTGCCCTATAGGGCGGCTCACATTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR GCA 90 bp | CTCACACAGAAAGGACCGTCCAACTTGGGGAATGCCCTAACAAAGCCAGTCAGACATTGGCTGCCTGTGTaGTTTACAGATTCATACCCT | + |
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Preference number: 2 (lower is better) Translates to: LTQKGPSNLGNALTKPVRHWLPV*FTDSYP Trigger: AGGGTATGAATCTGTAAAGCACACAGGCAGCCAATG...TCTGACTGGCTTTGTTAGGGCATTCCCCAAGTTGGACGGTCCTTTCTGTGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR TCA 90 bp | TATGTTGCATACACATTGGCTGCTCCAGAAGTCTTAGGCATACAGACAGGAAAGGGAGGGAATGTAGGCTaGGCTTCCTATTTGGAGTGG | + |
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Preference number: 2 (lower is better) Translates to: YVAYTLAAPEVLGIQTGKGGNVG*ASYLEW Trigger: CCACTCCAAATAGGAAGCTCAGCCTACATTCCCTCC...CTTTCCTGTCTGTATGCCTAAGACTTCTGGAGCAGCCAATGTGTATGCAACATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR GCA 90 bp | CCTATAGGGCACAACACCACTTCTGTGTTATTTCTGCTAAAGACGAGTAACCTCGTCCAACTTGGGGAATaGCCTAACAAAGCCAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: PIGHNTTSVLFLLKTSNLVQLGE*PNKASQ Trigger: CTGACTGGCTTTGTTAGGGCATTCCCCAAGTTGGAC...GAGGTTACTCGTCTTTAGCAGAAATAACACAGAAGTGGTGTTGTGCCCTATAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR TCA 90 bp | TGTTGGGAATGGGGATCCTTCAAGGAACAGAGTAAAGCACCTTCACCCTCACACAGAGAACACCATACTTaGTTCAAATTACACGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: CWEWGSFKEQSKAPSPSHREHHT*FKLHVQ Trigger: CTGAACGTGTAATTTGAATCAAGTATGGTGTTCTCT...GTGTGAGGGTGAAGGTGCTTTACTCTGTTCCTTGAAGGATCCCCATTCCCAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CAA 90 bp | AGAACTTACAGCTCCTACATACATCCTAGAAGCCAGGGGAAGATCTaGAATGCAGACCAAAGACTAGAGGGTAGTGACATATCAGTGTTA | + |
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Preference number: 2 (lower is better) Translates to: RTYSSYIHPRSQGKI*NADQRLEGSDISVL Trigger: TAACACTGATATGTCACTACCCTCTAGTCTTTGGTCTGCATTCAAGATCTTCCCCTGGCTTCTAGGATGTATGTAGGAGCTGTAAGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR CCA 90 bp | TCTAAAGAAGGCTATCTTAAAGTGCTAGGGCTGACTTCCAGGCTGCATAGTTTCCTAGAGTCTAGGAATTaGAAGAGAGCATGTTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: SKEGYLKVLGLTSRLHSFLESRN*KRACWF Trigger: GAACCAACATGCTCTCTTCCAATTCCTAGACTCTAG...GAAACTATGCAGCCTGGAAGTCAGCCCTAGCACTTTAAGATAGCCTTCTTTAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR TCA 90 bp | TCCAGCTCAGAGCAGTCATATGCTCTTTACACTTCAGAATCCTTCCAACTAACTGGCATTCTATCCCAGTaGGGTCTGTTTGTTGAATAT | + |
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Preference number: 2 (lower is better) Translates to: SSSEQSYALYTSESFQLTGILSQ*GLFVEY Trigger: ATATTCAACAAACAGACCTCACTGGGATAGAATGCC...AGTTAGTTGGAAGGATTCTGAAGTGTAAAGAGCATATGACTGCTCTGAGCTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR TCA 90 bp | TTTTTATGTTGCATACACATTGGCTGCTCCAGAAGTCTTAGGCATACAGACAGGATGGAATCTGAAAAATaGGGACAGATGGTGGCCATT | + |
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Preference number: 2 (lower is better) Translates to: FLCCIHIGCSRSLRHTDRMESEK*GQMVAI Trigger: AATGGCCACCATCTGTCCTCATTTTTCAGATTCCAT...CCTGTCTGTATGCCTAAGACTTCTGGAGCAGCCAATGTGTATGCAACATAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR GCA 90 bp | CCTATAGGGCACAACACCACTTCTGTGTTATTTCTGCTAAAGACGAGTAACCTCCTCAGAGCAGTCATATaGTCTTTACACTTCAGAATC | + |
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Preference number: 2 (lower is better) Translates to: PIGHNTTSVLFLLKTSNLLRAVI*SLHFRI Trigger: GATTCTGAAGTGTAAAGAGCATATGACTGCTCTGAG...GAGGTTACTCGTCTTTAGCAGAAATAACACAGAAGTGGTGTTGTGCCCTATAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR GCA 90 bp | TCTAAAGAAGGCTATCTTAAAGTGCTAGGGCTGACTTCCAGGCTGCATAGTTTCGTTGCTTTCCTTGCTTaGAACTTTAATATGATCTAC | + |
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Preference number: 2 (lower is better) Translates to: SKEGYLKVLGLTSRLHSFVAFLA*NFNMIY Trigger: GTAGATCATATTAAAGTTGCAAGCAAGGAAAGCAAC...GAAACTATGCAGCCTGGAAGTCAGCCCTAGCACTTTAAGATAGCCTTCTTTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 72 bp | CCAAAGCAGCAGCTTGTCCCAGGCATCTCCCAACTCTaGGACTCCAGCGTAGCCTGGAGTGCTGCTCCAGGG | + |
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Preference number: 3 (lower is better) Translates to: PKQQLVPGISQL*DSSVAWSAAPG Trigger: CCCTGGAGCAGCACTCCAGGCTACGCTGGAGTCCCAGAGTTGGGAGATGCCTGGGACAAGCTGCTGCTTTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 72 bp | CCAGGCATCTCCCAACTCTGGGACTCCAGCGTAGCCTaGAGTGCTGCTCCAGGGGGACTACTTCAACCTGTC | + |
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Preference number: 3 (lower is better) Translates to: PGISQLWDSSVA*SAAPGGLLQPV Trigger: GACAGGTTGAAGTAGTCCCCCTGGAGCAGCACTCCAGGCTACGCTGGAGTCCCAGAGTTGGGAGATGCCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR CAA 90 bp | GGCACCATTCTGTGGGGCCAGGAGGTCAACGCAGAAACTAACTCAGGCACAGAGGACCAAAGCAGCAGCTaGTCCCAGGCATCTCCCAAC | + |
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Preference number: 3 (lower is better) Translates to: GTILWGQEVNAETNSGTEDQSSS*SQASPN Trigger: GTTGGGAGATGCCTGGGACAAGCTGCTGCTTTGGTC...CTCTGTGCCTGAGTTAGTTTCTGCGTTGACCTCCTGGCCCCACAGAATGGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR GCA 72 bp | CACCCTCACACAGAAAGGACCGTCCAACTTGGGGAATaGCCTAACAAAGCCAGTCAGACTGCCCGGGTCATC | + |
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Preference number: 3 (lower is better) Translates to: HPHTERTVQLGE*PNKASQTARVI Trigger: GATGACCCGGGCAGTCTGACTGGCTTTGTTAGGGCATTCCCCAAGTTGGACGGTCCTTTCTGTGTGAGGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 72 bp | TGTCAAACCCAGAGAGAGCAAAGTGTGGCTGTAGTCTaGCAGCCACCACCCAGAAACCGCAGCTTTCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: CQTQREQSVAVV*QPPPRNRSFQA Trigger: AGCCTGAAAGCTGCGGTTTCTGGGTGGTGGCTGCCAGACTACAGCCACACTTTGCTCTCTCTGGGTTTGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR CAA 90 bp | GCCCTACTGTACTTCCCAGATCCCAGAGACCAAAGCAGCAGCTTGTCCCAGGCACCCATTAACAGAGGGTaGCTTTCCTTGCTTGCAACT | + |
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Preference number: 3 (lower is better) Translates to: ALLYFPDPRDQSSSLSQAPINRG*LSLLAT Trigger: AGTTGCAAGCAAGGAAAGCAACCCTCTGTTAATGGG...TGCCTGGGACAAGCTGCTGCTTTGGTCTCTGGGATCTGGGAAGTACAGTAGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR CAA 90 bp | CTCACACAGAAAGGACCGTCCAACTTGGGGAATGCCCTAACAAAGCCAGTCAGATCTTTAAGGGGAAATTaGAAGGCAAGAGCAGGCATC | + |
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Preference number: 3 (lower is better) Translates to: LTQKGPSNLGNALTKPVRSLRGN*KARAGI Trigger: GATGCCTGCTCTTGCCTTCAAATTTCCCCTTAAAGA...TCTGACTGGCTTTGTTAGGGCATTCCCCAAGTTGGACGGTCCTTTCTGTGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR CAA 90 bp | GGCACCATTCTGTGGGGCCAGGAGGTCAACGCAGAAACTAACTCAGGCACAGAGGAGAGAACACCATACTaGATTCAAATTACACGTTCA | + |
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Preference number: 3 (lower is better) Translates to: GTILWGQEVNAETNSGTEERTPY*IQITRS Trigger: TGAACGTGTAATTTGAATCAAGTATGGTGTTCTCTC...CTCTGTGCCTGAGTTAGTTTCTGCGTTGACCTCCTGGCCCCACAGAATGGTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR CAA 90 bp | CTCACACAGAAAGGACCGTCCAACTTGGGGAATGCCCTAACAAAGCCAGTCAGATTGGAAGAGAGCATGTaGGTTCTAATGCATGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: LTQKGPSNLGNALTKPVRLEESM*VLMHEF Trigger: GAACTCATGCATTAGAACCAACATGCTCTCTTCCAA...TCTGACTGGCTTTGTTAGGGCATTCCCCAAGTTGGACGGTCCTTTCTGTGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR-3UTR CAA 90 bp | CTCACACAGAAAGGACCGTCCAACTTGGGGAATGCCCTAACAAAGCCAGTCAGAAGTGAGGTCTGTTTGTaGAATATATATGAGCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: LTQKGPSNLGNALTKPVRSEVCL*NIYELG Trigger: ACCCAGCTCATATATATTCAACAAACAGACCTCACT...TCTGACTGGCTTTGTTAGGGCATTCCCCAAGTTGGACGGTCCTTTCTGTGTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR TCA 72 bp | GCTGATCTCCATGGAAAGAAAATGGAATCTGAAAAATaGGGACAGATGGTGGCCATTGGCTGCCTGTGTGCT | + |
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Preference number: 3 (lower is better) Translates to: ADLHGKKMESEK*GQMVAIGCLCA Trigger: AGCACACAGGCAGCCAATGGCCACCATCTGTCCTCATTTTTCAGATTCCATTTTCTTTCCATGGAGATCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR TCA 72 bp | TGCCCTAACAAAGCCAGTCAGACTGCCCGGGTCATCTaGAGAGAGAGAACACCATACTTGATTCAAATTACA | + |
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Preference number: 3 (lower is better) Translates to: CPNKASQTARVI*RERTPYLIQIT Trigger: TGTAATTTGAATCAAGTATGGTGTTCTCTCTCTTCAGATGACCCGGGCAGTCTGACTGGCTTTGTTAGGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 72 bp | CTTCAAGAAGTCATTGTTAGGTGTTCGTGTTGGGAATaGGGATCCTTCAAGGAACAGAGTAAAGCACCTTCA | + |
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Preference number: 3 (lower is better) Translates to: LQEVIVRCSCWE*GSFKEQSKAPS Trigger: TGAAGGTGCTTTACTCTGTTCCTTGAAGGATCCCCATTCCCAACACGAACACCTAACAATGACTTCTTGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR TCA 72 bp | CTGCCCGGGTCATCTGAAGAGAGAGAACACCATACTTaGTTCAAATTACACGTTCAGTACTGTACTGTACAT | + |
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Preference number: 3 (lower is better) Translates to: LPGSSEEREHHT*FKLHVQYCTVH Trigger: ATGTACAGTACAGTACTGAACGTGTAATTTGAATCAAGTATGGTGTTCTCTCTCTTCAGATGACCCGGGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR GCA 72 bp | TTCACCCCCAGAAAACACAGCAAGGTTATAGCCCATTaGTGCACACAAGTGCTTAGCCTTTACTTTGTATTA | + |
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Preference number: 3 (lower is better) Translates to: FTPRKHSKVIAH*CTQVLSLYFVL Trigger: TAATACAAAGTAAAGGCTAAGCACTTGTGTGCAGCAATGGGCTATAACCTTGCTGTGTTTTCTGGGGGTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 72 bp | AAGGGAGCAACTATCTTATGTAGCACGAAAGGTCATTaGAGAGCAAGGGCTAATTTGCATATGGTAGCTAAG | + |
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Preference number: 3 (lower is better) Translates to: KGATILCSTKGH*RARANLHMVAK Trigger: CTTAGCTACCATATGCAAATTAGCCCTTGCTCTCCAATGACCTTTCGTGCTACATAAGATAGTTGCTCCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CCA 72 bp | ATTTATTGGCTGTTCAGGAGCAGAATCCCTTTACAATaGAGAAGCTTGACAGGAGATGAAAACAAACACTGG | + |
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Preference number: 3 (lower is better) Translates to: IYWLFRSRIPLQ*RSLTGDENKHW Trigger: CCAGTGTTTGTTTTCATCTCCTGTCAAGCTTCTCCATTGTAAAGGGATTCTGCTCCTGAACAGCCAATAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CAA 72 bp | CTGTACTTCCCAGATCCCAGAGACCAAAGCAGCAGCTaGTCCCAGGCATCTCCCAACTCTGGGACTCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: LYFPDPRDQSSS*SQASPNSGTPA Trigger: CGCTGGAGTCCCAGAGTTGGGAGATGCCTGGGACAAGCTGCTGCTTTGGTCTCTGGGATCTGGGAAGTACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR TCA 90 bp | GCCCTACTGTACTTCCCAGATCCCAGAGACCAAAGCAGCAGCTTGTCCCAGGCATTCCCTTGGTCTTGGTaGGTTCGCAGAGGACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: ALLYFPDPRDQSSSLSQAFPWSW*VRRGLL Trigger: GAGAAGTCCTCTGCGAACTCACCAAGACCAAGGGAA...TGCCTGGGACAAGCTGCTGCTTTGGTCTCTGGGATCTGGGAAGTACAGTAGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR CCA 90 bp | GGACTCCAGCGTAGCCTGGAGTGCTGCTCCAGGGGGACTACTTCAACCTGTCAACGCATTTTTAACTGCTaGACAGTCTCAGGGTATTTA | + |
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Preference number: 4 (lower is better) Translates to: GLQRSLECCSRGTTSTCQRIFNC*TVSGYL Trigger: TAAATACCCTGAGACTGTCCAGCAGTTAAAAATGCG...TTGACAGGTTGAAGTAGTCCCCCTGGAGCAGCACTCCAGGCTACGCTGGAGTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CAA 72 bp | CCAGGCTGCATAGTTTCTAGGAGAGGGAATTCTGTCTaGGCCCTACTGTACTTCCCAGATCCCAGAGACCAA | + |
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Preference number: 4 (lower is better) Translates to: PGCIVSRRGNSV*ALLYFPDPRDQ Trigger: TTGGTCTCTGGGATCTGGGAAGTACAGTAGGGCCAAGACAGAATTCCCTCTCCTAGAAACTATGCAGCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR TCA 90 bp | GGCACCATTCTGTGGGGCCAGGAGGTCAACGCAGAAACTAACTCAGGCACAGAGCTCCTGTTAAAAGTCTaGTTAGGAAGCAGAAGACAA | + |
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Preference number: 4 (lower is better) Translates to: GTILWGQEVNAETNSGTELLLKV*LGSRRQ Trigger: TTGTCTTCTGCTTCCTAATCAGACTTTTAACAGGAG...CTCTGTGCCTGAGTTAGTTTCTGCGTTGACCTCCTGGCCCCACAGAATGGTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR CCA 90 bp | TATGTTGCATACACATTGGCTGCTCCAGAAGTCTTAGGCATACAGACAGGAAAGAGCCAGAGCTTCAGCTaGCAGCAGAGCTGGGATTCA | + |
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Preference number: 4 (lower is better) Translates to: YVAYTLAAPEVLGIQTGKSQSFS*QQSWDS Trigger: TGAATCCCAGCTCTGCTGCCAGCTGAAGCTCTGGCT...CTTTCCTGTCTGTATGCCTAAGACTTCTGGAGCAGCCAATGTGTATGCAACATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR TCA 90 bp | AGTGCTGCTCCAGGGGGACTACTTCAACCTGTCAAACCCAGAGAGAGCAAAGTGGGACTTCTCTCTCTCTaGACAATCGCATTTTTAACT | + |
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Preference number: 4 (lower is better) Translates to: SAAPGGLLQPVKPRESKVGLLSL*TIAFLT Trigger: AGTTAAAAATGCGATTGTTCAGAGAGAGAGAAGTCC...CACTTTGCTCTCTCTGGGTTTGACAGGTTGAAGTAGTCCCCCTGGAGCAGCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR TCA 90 bp | CTCACACAGAAAGGACCGTCCAACTTGGGGAATGCCCTAACAAAGCCAGTCAGACTAAGGTTCCTTTCTTaGAAAGGAGGTGGGTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LTQKGPSNLGNALTKPVRLRFLS*KGGGSK Trigger: TTTTGACCCACCTCCTTTTCAAGAAAGGAACCTTAG...TCTGACTGGCTTTGTTAGGGCATTCCCCAAGTTGGACGGTCCTTTCTGTGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR GCA 90 bp | TGTTGGGAATGGGGATCCTTCAAGGAACAGAGTAAAGCACCTTCACCCTCACACCAAAAATGGACAGGCTaGAGAAGTAATAGCTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: CWEWGSFKEQSKAPSPSHQKWTG*RSNSFP Trigger: AGGGAAGCTATTACTTCTGCAGCCTGTCCATTTTTG...GTGTGAGGGTGAAGGTGCTTTACTCTGTTCCTTGAAGGATCCCCATTCCCAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR TCA 90 bp | ACATCAAAATCGCAGAAACACAAGCGCTTCTGTTGTGAAGCATCTCCCTCTACTGATCGGCCGAGCCATTaGTTTCTCCTGTTAAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: TSKSQKHKRFCCEASPSTDRPSH*FLLLKV Trigger: GACTTTTAACAGGAGAAATCAATGGCTCGGCCGATC...AGTAGAGGGAGATGCTTCACAACAGAAGCGCTTGTGTTTCTGCGATTTTGATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CAA 72 bp | TGTAGCACGAAAGGTCATTGGAGAGCAAGGGCTAATTaGCATATGGTAGCTAAGGTCATCACTTCTTCACCC | + |
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Preference number: 4 (lower is better) Translates to: CSTKGHWRARAN*HMVAKVITSSP Trigger: GGGTGAAGAAGTGATGACCTTAGCTACCATATGCAAATTAGCCCTTGCTCTCCAATGACCTTTCGTGCTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CAA 72 bp | GTCACTGATCCAGACAAACAAAACACCAGCAGAATGTaGTCTGTAGTTAAATCAAGTCAGGTGCCCTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: VTDPDKQNTSRM*SVVKSSQVPCG Trigger: ACCACAGGGCACCTGACTTGATTTAACTACAGACAACATTCTGCTGGTGTTTTGTTTGTCTGGATCAGTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CAA 72 bp | AAATGGAATCTGAAAAATGAGGACAGATGGTGGCCATaGGCTGCCTGTGTGCTTTACAGATTCATACCCTTG | + |
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Preference number: 4 (lower is better) Translates to: KWNLKNEDRWWP*AACVLYRFIPL Trigger: CAAGGGTATGAATCTGTAAAGCACACAGGCAGCCAATGGCCACCATCTGTCCTCATTTTTCAGATTCCATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| 3UTR CAA 72 bp | CTGTTCAGGAGCAGAATCCCTTTACAATGGAGAAGCTaGACAGGAGATGAAAACAAACACTGGCAGTTACTT | + |
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Preference number: 4 (lower is better) Translates to: LFRSRIPLQWRS*TGDENKHWQLL Trigger: AAGTAACTGCCAGTGTTTGTTTTCATCTCCTGTCAAGCTTCTCCATTGTAAAGGGATTCTGCTCCTGAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR CAA 90 bp | GCCTGGAGTGCTGCTCCAGGGGGACTACTTCAACCTGTCAAACCCAGAGAGAGCCCGCTTCCCTTGGTCTaGGTGAGTTCGCAGAGGACT | + |
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Preference number: 5 (lower is better) Translates to: AWSAAPGGLLQPVKPRESPLPLV*VSSQRT Trigger: AGTCCTCTGCGAACTCACCAAGACCAAGGGAAGCGG...GCTCTCTCTGGGTTTGACAGGTTGAAGTAGTCCCCCTGGAGCAGCACTCCAGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR CAA 90 bp | GCCCTACTGTACTTCCCAGATCCCAGAGACCAAAGCAGCAGCTTGTCCCAGGCAGCAAGTCTAGACTTTTaGTTTGTGTTGACTGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: ALLYFPDPRDQSSSLSQAASLDF*FVLTAA Trigger: GGCGGCAGTCAACACAAACAAAAAGTCTAGACTTGC...TGCCTGGGACAAGCTGCTGCTTTGGTCTCTGGGATCTGGGAAGTACAGTAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS-3UTR CAA 90 bp | CTCACACAGAAAGGACCGTCCAACTTGGGGAATGCCCTAACAAAGCCAGTCAGAACTAAGGTTCCTTTCTaGAAAAGGAGGTGGGTCAAA | + |
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Preference number: 5 (lower is better) Translates to: LTQKGPSNLGNALTKPVRTKVPF*KRRWVK Trigger: TTTGACCCACCTCCTTTTCAAGAAAGGAACCTTAGT...TCTGACTGGCTTTGTTAGGGCATTCCCCAAGTTGGACGGTCCTTTCTGTGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS GCA 90 bp | AAGGGGAGCTGTACCTGCAAGTCTAGACTTTTTGTTTGTGTTGACTaGCGCCATGAACATGTATTCACTATTAGGGTCATGCACACTGGA | + |
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Preference number: 5 (lower is better) Translates to: KGSCTCKSRLFVCVD*RHEHVFTIRVMHTG Trigger: TCCAGTGTGCATGACCCTAATAGTGAATACATGTTCATGGCGGCAGTCAACACAAACAAAAAGTCTAGACTTGCAGGTACAGCTCCCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027162.12 |
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| CDS GCA 90 bp | AGTTCGCAGAGGACTTCTCTCTCTCTGAACAATCGCATTTTTAACTaGTGGACAGTCTCAGGGTATTTACAAGAAATCTGTACACCTCCA | + |
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Preference number: 5 (lower is better) Translates to: SSQRTSLSLNNRIFN*WTVSGYLQEICTPP Trigger: TGGAGGTGTACAGATTTCTTGTAAATACCCTGAGACTGTCCAGCAGTTAAAAATGCGATTGTTCAGAGAGAGAGAAGTCCTCTGCGAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027162.12 ENSMUST00000102827.4 |
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| CDS CCA 90 bp | TCGCAGAGGACTTCTCTCTCTCTGAACAATCGCATTTTTAACTGCTaGACAGTCTCAGGGTATTTACAAGAAATCTGTACACCTCCATTG | + |
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Preference number: 5 (lower is better) Translates to: SQRTSLSLNNRIFNC*TVSGYLQEICTPPL Trigger: CAATGGAGGTGTACAGATTTCTTGTAAATACCCTGAGACTGTCCAGCAGTTAAAAATGCGATTGTTCAGAGAGAGAGAAGTCCTCTGCGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027162.12 ENSMUST00000102827.4 |
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| CDS CAA 90 bp | GCCGTAAGGGGAGCTGTACCTGCAAGTCTAGACTTTTTGTTTGTGTaGACTGCCGCCATGAACATGTATTCACTATTAGGGTCATGCACA | + |
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Preference number: 6 (lower is better) Translates to: AVRGAVPASLDFLFV*TAAMNMYSLLGSCT Trigger: TGTGCATGACCCTAATAGTGAATACATGTTCATGGCGGCAGTCAACACAAACAAAAAGTCTAGACTTGCAGGTACAGCTCCCCTTACGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027162.12 |
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| CDS CAA 72 bp | GCCGTAAGGGGAGCTGTACCTGCAAGTCTAGACTTTTaGTTTGTGTTGACTGCCGCCATGAACATGTATTCA | + |
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Preference number: 6 (lower is better) Translates to: AVRGAVPASLDF*FVLTAAMNMYS Trigger: TGAATACATGTTCATGGCGGCAGTCAACACAAACAAAAAGTCTAGACTTGCAGGTACAGCTCCCCTTACGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027162.12 |
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| CDS TCA 72 bp | TGTTTGACAGATGATATAGACAGAGCATTGGATTCTTaGTGGACACCGCATTTCCGCTTCCCTTGGTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: CLTDDIDRALDS*WTPHFRFPWSW Trigger: CCAAGACCAAGGGAAGCGGAAATGCGGTGTCCATCAAGAATCCAATGCTCTGTCTATATCATCTGTCAAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027162.12 ENSMUST00000102827.4 |
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| CDS CAA 72 bp | GGAGCTGTACCTGCAAGTCTAGACTTTTTGTTTGTGTaGACTGCCGCCATGAACATGTATTCACTATTAGGG | + |
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Preference number: 6 (lower is better) Translates to: GAVPASLDFLFV*TAAMNMYSLLG Trigger: CCCTAATAGTGAATACATGTTCATGGCGGCAGTCAACACAAACAAAAAGTCTAGACTTGCAGGTACAGCTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027162.12 |
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| CDS GCA 72 bp | CACACCTGCAAGTCTAGACTTTTTGTTTGTGTTGACTaGCGCCATGAACATGTATTCACTATTAGGGTCATG | + |
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Preference number: 6 (lower is better) Translates to: HTCKSRLFVCVD*RHEHVFTIRVM Trigger: CATGACCCTAATAGTGAATACATGTTCATGGCGGCAGTCAACACAAACAAAAAGTCTAGACTTGCAGGTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102827.4 |
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| CDS GCA 72 bp | TGTACCTGCAAGTCTAGACTTTTTGTTTGTGTTGACTaGCGCCATGAACATGTATTCACTATTAGGGTCATG | + |
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Preference number: 6 (lower is better) Translates to: CTCKSRLFVCVD*RHEHVFTIRVM Trigger: CATGACCCTAATAGTGAATACATGTTCATGGCGGCAGTCAACACAAACAAAAAGTCTAGACTTGCAGGTACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027162.12 |
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| CDS CAA 90 bp | CTGGGATTCATAAATATGCAAATATCCTCCACTAAGGTTCCTTTCTaGAAAAGGAGGTGGGTCAAAAATGGACAGGCTGCAGAAGTAATA | + |
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Preference number: 6 (lower is better) Translates to: LGFINMQISSTKVPF*KRRWVKNGQAAEVI Trigger: TATTACTTCTGCAGCCTGTCCATTTTTGACCCACCTCCTTTTCAAGAAAGGAACCTTAGTGGAGGATATTTGCATATTTATGAATCCCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027162.12 ENSMUST00000102827.4 |
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