Pregenerated sensors for ICAM4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001014Ensembl transcript IDs: ENSMUST00000001040.7, ENSMUST00000215077.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAGTCTGCACAGCCAGGTACTTGCGCACGTAGACAGCCCCCACAGCCAGGAGGACTGGGCTTAAAGCTGTaGGCAGGAGTGAAAATCAGG | + |
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Preference number: 2 (lower is better) Translates to: KSAQPGTCARRQPPQPGGLGLKL*AGVKIR Trigger: CCTGATTTTCACTCCTGCCCACAGCTTTAAGCCCAG...TCCTCCTGGCTGTGGGGGCTGTCTACGTGCGCAAGTACCTGGCTGTGCAGACTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| 3UTR-3UTR GCA 90 bp | TCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTGATCCCCACCAGGGTTaGGATGGAGGTAGAGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: SIRVSELITLKFFSPPSCDPHQG*DGGRGQ Trigger: TTGGCCTCTACCTCCATCGCAACCCTGGTGGGGATC...ACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| 3UTR GCA 72 bp | AACAGATCTATAACTAAGTCTGCACAGCCAGGTACTTaGGCACGTAGACAGCCCCCACAGCCAGGAGGATCC | + |
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Preference number: 3 (lower is better) Translates to: NRSITKSAQPGT*ARRQPPQPGGS Trigger: GGATCCTCCTGGCTGTGGGGGCTGTCTACGTGCGCAAGTACCTGGCTGTGCAGACTTAGTTATAGATCTGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS-3UTR TCA 90 bp | AAGTCTGCACAGCCAGGTACTTGCGCACGTAGACAGCCCCCACAGCCAGGAGGACACCCAGAAAGGTGCTaGGGTCACGGAAGGCGCGGG | + |
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Preference number: 4 (lower is better) Translates to: KSAQPGTCARRQPPQPGGHPERC*GHGRRG Trigger: CCCGCGCCTTCCGTGACCTCAGCACCTTTCTGGGTG...TCCTCCTGGCTGTGGGGGCTGTCTACGTGCGCAAGTACCTGGCTGTGCAGACTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS-3UTR TCA 90 bp | TCTGCACAGCCAGGTACTTGCGCACGTAGACAGCCCCCACAGCCAGGAGGATCCGCCGTTTGTAAGCAGTaGTCCTGGCGGTGGCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: SAQPGTCARRQPPQPGGSAVCKQ*SWRWPL Trigger: GAGAGGCCACCGCCAGGATCACTGCTTACAAACGGC...GGATCCTCCTGGCTGTGGGGGCTGTCTACGTGCGCAAGTACCTGGCTGTGCAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | GAGGATCCCCACCAGGGTTGCGATGGAGGTAGAGGCCAAGGCTATAGAGGCTGGTGTCAACATAACAGGTaGCGAGCTGCTGCGCACCAC | + |
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Preference number: 4 (lower is better) Translates to: EDPHQGCDGGRGQGYRGWCQHNR*RAAAHH Trigger: GTGGTGCGCAGCAGCTCGGCACCTGTTATGTTGACA...CCAGCCTCTATAGCCTTGGCCTCTACCTCCATCGCAACCCTGGTGGGGATCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS-3UTR TCA 90 bp | TCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCATCGAAAGGCGCGCATGGCAGGTaGGTGGCTGCCAGAGGTCGT | + |
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Preference number: 4 (lower is better) Translates to: SELITLKFFSPPSCQASKGAHGR*VAARGR Trigger: ACGACCTCTGGCAGCCACTCACCTGCCATGCGCGCC...TTTCGATGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR TCA 90 bp | TCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCATCGAAACACCCAGAAAGGTGCTaGGGTCACGGAAGGCGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: SELITLKFFSPPSCQASKHPERC*GHGRRG Trigger: CCCGCGCCTTCCGTGACCTCAGCACCTTTCTGGGTG...TTTCGATGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | TCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCATCGAAACAGGTGCCGAGCTGCTaGGCACCACTAGCCCGTCGA | + |
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Preference number: 4 (lower is better) Translates to: SELITLKFFSPPSCQASKQVPSC*APLARR Trigger: TCGACGGGCTAGTGGTGCGCAGCAGCTCGGCACCTG...TTTCGATGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CCA 90 bp | TCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCATCGAAACAGGCCCCCTTGGAGTaGCAACATCCCCTCTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: SELITLKFFSPPSCQASKQAPLE*QHPLSR Trigger: GCGGGAGAGGGGATGTTGCCACTCCAAGGGGGCCTG...TTTCGATGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS-3UTR TCA 90 bp | AGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCAGCCGTTTGTAAGCAGTaGTCCTGGCGGTGGCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: RVSELITLKFFSPPSCQAAVCKQ*SWRWPL Trigger: GAGAGGCCACCGCCAGGATCACTGCTTACAAACGGC...TGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | ATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGCCTGCCGCAGTTGGGTaGGCAGGCTGGAATGCACCG | + |
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Preference number: 4 (lower is better) Translates to: IRVSELITLKFFSPPSCQPAAVG*AGWNAP Trigger: CGGTGCATTCCAGCCTGCGCACCCAACTGCGGCAGG...CTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CCA 90 bp | AGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCAGGCAGGGGGCAGTTGTaGCTGCAGTTAAGCCACGCT | + |
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Preference number: 4 (lower is better) Translates to: RVSELITLKFFSPPSCQAGRGQL*LQLSHA Trigger: AGCGTGGCTTAACTGCAGCCACAACTGCCCCCTGCC...TGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CCA 90 bp | AGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCACGCATGGCAGGTGAGTaGCTGCCAGAGGTCGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: RVSELITLKFFSPPSCQARMAGE*LPEVVE Trigger: CTCAACGACCTCTGGCAGCCACTCACCTGCCATGCG...TGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CCA 90 bp | AGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCAAGATTGAGGCGCGCATaGCAGGTGAGTGGCTGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RVSELITLKFFSPPSCQARLRRA*QVSGCQ Trigger: CTGGCAGCCACTCACCTGCCATGCGCGCCTCAATCT...TGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR TCA 90 bp | ATTGTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCGGCGCGCATGGCAGGTaGGTGGCTGCCAGAGGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: IVSIRVSELITLKFFSPPGAHGR*VAARGR Trigger: ACGACCTCTGGCAGCCACTCACCTGCCATGCGCGCC...GGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAACAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | GTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTCCTGCCGCAGTTGGGTaGGCAGGCTGGAATGCACCG | + |
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Preference number: 4 (lower is better) Translates to: VSIRVSELITLKFFSPPSPAAVG*AGWNAP Trigger: CGGTGCATTCCAGCCTGCGCACCCAACTGCGGCAGG...AGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | ATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGCTTTGCATCCACTCTTaGTGGGGGCTCCCACCCCTC | + |
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Preference number: 4 (lower is better) Translates to: IRVSELITLKFFSPPSCQLCIHS*WGLPPL Trigger: GAGGGGTGGGAGCCCCCAGCAAGAGTGGATGCAAAG...CTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | ATTGTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCCAGGTGCCGAGCTGCTaGGCACCACTAGCCCGTCGA | + |
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Preference number: 4 (lower is better) Translates to: IVSIRVSELITLKFFSPPQVPSC*APLARR Trigger: TCGACGGGCTAGTGGTGCGCAGCAGCTCGGCACCTG...GGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CCA 90 bp | ATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGGCAGGGGGCAGTTGTaGCTGCAGTTAAGCCACGCT | + |
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Preference number: 4 (lower is better) Translates to: IRVSELITLKFFSPPSCQGRGQL*LQLSHA Trigger: AGCGTGGCTTAACTGCAGCCACAACTGCCCCCTGCC...CTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | TCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCTCTCGGGTTTCTCCTaGGCAAGTGACGACGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: SIRVSELITLKFFSPPSCLSGFS*ASDDAA Trigger: CGCTGCGTCGTCACTTGCGCAGGAGAAACCCGAGAG...ACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CCA 90 bp | GTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTAGATTGAGGCGCGCATaGCAGGTGAGTGGCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: VSIRVSELITLKFFSPPSRLRRA*QVSGCQ Trigger: CTGGCAGCCACTCACCTGCCATGCGCGCCTCAATCT...AGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | ATTGTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCCTTTGCATCCACTCTTaGTGGGGGCTCCCACCCCTC | + |
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Preference number: 4 (lower is better) Translates to: IVSIRVSELITLKFFSPPLCIHS*WGLPPL Trigger: GAGGGGTGGGAGCCCCCAGCAAGAGTGGATGCAAAG...GGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAACAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | GTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTGATCCCCACCAGGGTTaGGATGGAGGTAGAGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: VSIRVSELITLKFFSPPSDPHQG*DGGRGQ Trigger: TTGGCCTCTACCTCCATCGCAACCCTGGTGGGGATC...AGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001040.7 |
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| CDS-3UTR TCA 90 bp | ATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGACATTAGCCAAATCTaGACCGGTGAAGCGCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: IRVSELITLKFFSPPSCQDISQI*TGEALQ Trigger: CTGGAGCGCTTCACCGGTTCAGATTTGGCTAATGTC...CTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR GCA 90 bp | GTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAACATAACAGGTaGCGAGCTGCTGCGCACCAC | + |
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Preference number: 4 (lower is better) Translates to: VSIRVSELITLKFFSPPSCQHNR*RAAAHH Trigger: GTGGTGCGCAGCAGCTCGGCACCTGTTATGTTGACA...AGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CCA 90 bp | GCCGAGCTGCTGCGCACCACTAGCCCGTCGAGATTGAGGCGCGCATaGCAGGTGAGTGGCTGCCAGAGGTCGTTGAGTCCGGCCCGCATC | + |
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Preference number: 5 (lower is better) Translates to: AELLRTTSPSRLRRA*QVSGCQRSLSPARI Trigger: GATGCGGGCCGGACTCAACGACCTCTGGCAGCCACTCACCTGCCATGCGCGCCTCAATCTCGACGGGCTAGTGGTGCGCAGCAGCTCGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CCA 90 bp | GAGGACCGCCAAGCGTGGAGCCCACGCCTGTTCTGCAGGCCCCCTTaGAGTGGCAACATCCCCTCTCCCGCACCCATTCCCTGGGATTAC | + |
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Preference number: 5 (lower is better) Translates to: EDRQAWSPRLFCRPP*SGNIPSPAPIPWDY Trigger: GTAATCCCAGGGAATGGGTGCGGGAGAGGGGATGTTGCCACTCCAAGGGGGCCTGCAGAACAGGCGTGGGCTCCACGCTTGGCGGTCCTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS CCA 90 bp | CCGCCAAGCGTGGAGCCCACGCCTGTTCTGCAGGCCCCCTTGGAGTaGCAACATCCCCTCTCCCGCACCCATTCCCTGGGATTACAGGAT | + |
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Preference number: 5 (lower is better) Translates to: PPSVEPTPVLQAPLE*QHPLSRTHSLGLQD Trigger: ATCCTGTAATCCCAGGGAATGGGTGCGGGAGAGGGGATGTTGCCACTCCAAGGGGGCCTGCAGAACAGGCGTGGGCTCCACGCTTGGCGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS-3UTR CAA 90 bp | TCTGCACAGCCAGGTACTTGCGCACGTAGACAGCCCCCACAGCCAGGAGGATCCAGGCGCGGGAGGACTTaGCATCCACTCTTGCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: SAQPGTCARRQPPQPGGSRRGRT*HPLLLG Trigger: CCCCAGCAAGAGTGGATGCAAAGTCCTCCCGCGCCT...GGATCCTCCTGGCTGTGGGGGCTGTCTACGTGCGCAAGTACCTGGCTGTGCAGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS GCA 90 bp | CCGTTTGTAAGCAGTGATCCTGGCGGTGGCCTCTCGGGTTTCTCCTaGGCAAGTGACGACGCAGCGCACCTTGGAATTCCAGGCCCTCAC | + |
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Preference number: 5 (lower is better) Translates to: PFVSSDPGGGLSGFS*ASDDAAHLGIPGPH Trigger: GTGAGGGCCTGGAATTCCAAGGTGCGCTGCGTCGTCACTTGCGCAGGAGAAACCCGAGAGGCCACCGCCAGGATCACTGCTTACAAACGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CAA 90 bp | GAGGATCCCCACCAGGGTTGCGATGGAGGTAGAGGCCAAGGCTATAGAGGCTGGACGACGCAGCGCACCTaGGAATTCCAGGCCCTCACA | + |
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Preference number: 5 (lower is better) Translates to: EDPHQGCDGGRGQGYRGWTTQRT*EFQALT Trigger: TGTGAGGGCCTGGAATTCCAAGGTGCGCTGCGTCGT...CCAGCCTCTATAGCCTTGGCCTCTACCTCCATCGCAACCCTGGTGGGGATCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS GCA 90 bp | CCATTAACTATCTTTCCCTGCCGCAGTTGGGTGCGCAGGCTGGAATaGACCGGCAGGGGGCAGTTGTGGCTGCAGTTAAGCCACGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: PLTIFPCRSWVRRLE*TGRGQLWLQLSHAE Trigger: CTCAGCGTGGCTTAACTGCAGCCACAACTGCCCCCTGCCGGTGCATTCCAGCCTGCGCACCCAACTGCGGCAGGGAAAGATAGTTAATGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS GCA 90 bp | GTGGCAACATCCCCTCTCCCGCACCCATTCCCTGGGATTACAGGATaGCTCACCGAGGACTGTCAACATAACAGGTGCCGAGCTGCTGCG | + |
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Preference number: 5 (lower is better) Translates to: VATSPLPHPFPGITG*LTEDCQHNRCRAAA Trigger: CGCAGCAGCTCGGCACCTGTTATGTTGACAGTCCTCGGTGAGGCATCCTGTAATCCCAGGGAATGGGTGCGGGAGAGGGGATGTTGCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS TCA 90 bp | GAGTCCGGCCCGCATCACGTAGGTCAAAGTGACATTAGCCAAATCTaGACCGGTGAAGCGCTCCAGGCTTTCATGATAAATCACTCGGCC | + |
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Preference number: 5 (lower is better) Translates to: ESGPHHVGQSDISQI*TGEALQAFMINHSA Trigger: GGCCGAGTGATTTATCATGAAAGCCTGGAGCGCTTCACCGGTTCAGATTTGGCTAATGTCACTTTGACCTACGTGATGCGGGCCGGACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CAA 90 bp | AGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCAAGGCGCGGGAGGACTTaGCATCCACTCTTGCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: RVSELITLKFFSPPSCQARRGRT*HPLLLG Trigger: CCCCAGCAAGAGTGGATGCAAAGTCCTCCCGCGCCT...TGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CAA 90 bp | AGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTCAGGCAACCGGCAGGGGGCAGTaGTGGCTGCAGTTAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RVSELITLKFFSPPSCQATGRGQ*WLQLSH Trigger: GTGGCTTAACTGCAGCCACAACTGCCCCCTGCCGGT...TGCCTGACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CAA 90 bp | ATTGTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCACCGGCAGGGGGCAGTaGTGGCTGCAGTTAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: IVSIRVSELITLKFFSPPTGRGQ*WLQLSH Trigger: GTGGCTTAACTGCAGCCACAACTGCCCCCTGCCGGT...GGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAACAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CAA 90 bp | TCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCTCTTGTACGACGCAGCGCACCTaGGAATTCCAGGCCCTCACA | + |
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Preference number: 5 (lower is better) Translates to: SIRVSELITLKFFSPPSCTTQRT*EFQALT Trigger: TGTGAGGGCCTGGAATTCCAAGGTGCGCTGCGTCGT...ACAAGAGGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS-3UTR CAA 90 bp | ATTGTTTCAATAAGAGTCTCTGAATTAATTACTCTGAAGTTCTTTTCCCCTCCCACTTTGCATCCACTCTaGCTGGGGGCTCCCACCCCT | + |
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Preference number: 5 (lower is better) Translates to: IVSIRVSELITLKFFSPPTLHPL*LGAPTP Trigger: AGGGGTGGGAGCCCCCAGCAAGAGTGGATGCAAAGT...GGGAGGGGAAAAGAACTTCAGAGTAATTAATTCAGAGACTCTTATTGAAACAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CAA 72 bp | TGGGTGCGCAGGCTGGAATGCACCGGCAGGGGGCAGTaGTGGCTGCAGTTAAGCCACGCTGAGCCCCCGGGA | + |
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Preference number: 6 (lower is better) Translates to: WVRRLECTGRGQ*WLQLSHAEPPG Trigger: TCCCGGGGGCTCAGCGTGGCTTAACTGCAGCCACAACTGCCCCCTGCCGGTGCATTCCAGCCTGCGCACCCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CAA 72 bp | GGTGCCGAGCTGCTGCGCACCACTAGCCCGTCGAGATaGAGGCGCGCATGGCAGGTGAGTGGCTGCCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: GAELLRTTSPSR*RRAWQVSGCQR Trigger: CCTCTGGCAGCCACTCACCTGCCATGCGCGCCTCAATCTCGACGGGCTAGTGGTGCGCAGCAGCTCGGCACC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CAA 72 bp | GGTCACGGAAGGCGCGGGAGGACTTTGCATCCACTCTaGCTGGGGGCTCCCACCCCTCGGATAGGCAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: GHGRRGRTLHPL*LGAPTPRIGSH Trigger: GTGGCTGCCTATCCGAGGGGTGGGAGCCCCCAGCAAGAGTGGATGCAAAGTCCTCCCGCGCCTTCCGTGACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CCA 72 bp | CTGCGCACCACTAGCCCGTCGAGATTGAGGCGCGCATaGCAGGTGAGTGGCTGCCAGAGGTCGTTGAGTCCG | + |
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Preference number: 6 (lower is better) Translates to: LRTTSPSRLRRA*QVSGCQRSLSP Trigger: CGGACTCAACGACCTCTGGCAGCCACTCACCTGCCATGCGCGCCTCAATCTCGACGGGCTAGTGGTGCGCAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS TCA 72 bp | TCCTGGCGGTGGCCTCTCGGGTTTCTCCTGCGCAAGTaGCGACGCAGCGCACCTTGGAATTCCAGGCCCTCA | + |
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Preference number: 6 (lower is better) Translates to: SWRWPLGFLLRK*RRSAPWNSRPS Trigger: TGAGGGCCTGGAATTCCAAGGTGCGCTGCGTCGTCACTTGCGCAGGAGAAACCCGAGAGGCCACCGCCAGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS GCA 72 bp | AAAGGTGCTGAGGTCACGGAAGGCGCGGGAGGACTTTaGATCCACTCTTGCTGGGGGCTCCCACCCCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: KGAEVTEGAGGL*IHSCWGLPPLG Trigger: TCCGAGGGGTGGGAGCCCCCAGCAAGAGTGGATGCAAAGTCCTCCCGCGCCTTCCGTGACCTCAGCACCTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS GCA 72 bp | ATCTTTCCCTGCCGCAGTTGGGTGCGCAGGCTGGAATaGACCGGCAGGGGGCAGTTGTGGCTGCAGTTAAGC | + |
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Preference number: 6 (lower is better) Translates to: IFPCRSWVRRLE*TGRGQLWLQLS Trigger: GCTTAACTGCAGCCACAACTGCCCCCTGCCGGTGCATTCCAGCCTGCGCACCCAACTGCGGCAGGGAAAGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CCA 72 bp | CAGCCGGATCCATTAACTATCTTTCCCTGCCGCAGTTaGGTGCGCAGGCTGGAATGCACCGGCAGGGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: QPDPLTIFPCRS*VRRLECTGRGQ Trigger: CTGCCCCCTGCCGGTGCATTCCAGCCTGCGCACCCAACTGCGGCAGGGAAAGATAGTTAATGGATCCGGCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CAA 90 bp | AACATAACAGGTGCCGAGCTGCTGCGCACCACTAGCCCGTCGAGATaGAGGCGCGCATGGCAGGTGAGTGGCTGCCAGAGGTCGTTGAGT | + |
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Preference number: 6 (lower is better) Translates to: NITGAELLRTTSPSR*RRAWQVSGCQRSLS Trigger: ACTCAACGACCTCTGGCAGCCACTCACCTGCCATGCGCGCCTCAATCTCGACGGGCTAGTGGTGCGCAGCAGCTCGGCACCTGTTATGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS GCA 72 bp | AGCAGTGATCCTGGCGGTGGCCTCTCGGGTTTCTCCTaGGCAAGTGACGACGCAGCGCACCTTGGAATTCCA | + |
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Preference number: 6 (lower is better) Translates to: SSDPGGGLSGFS*ASDDAAHLGIP Trigger: TGGAATTCCAAGGTGCGCTGCGTCGTCACTTGCGCAGGAGAAACCCGAGAGGCCACCGCCAGGATCACTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS CCA 72 bp | TGGAGTGGCAACATCCCCTCTCCCGCACCCATTCCCTaGGATTACAGGATGCCTCACCGAGGACTGTCAACA | + |
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Preference number: 6 (lower is better) Translates to: WSGNIPSPAPIP*DYRMPHRGLST Trigger: TGTTGACAGTCCTCGGTGAGGCATCCTGTAATCCCAGGGAATGGGTGCGGGAGAGGGGATGTTGCCACTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215077.2 |
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| CDS CCA 72 bp | GCCACCTCTTCTCAGGCTCACCACCAAGAATCCCACTaGGAACACGTGTGTCACATAGCATCGCAGAGTGTA | + |
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Preference number: 6 (lower is better) Translates to: ATSSQAHHQESH*EHVCHIASQSV Trigger: TACACTCTGCGATGCTATGTGACACACGTGTTCCCAGTGGGATTCTTGGTGGTGAGCCTGAGAAGAGGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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| CDS TCA 72 bp | CCGCATCACGTAGGTCAAAGTGACATTAGCCAAATCTaGACCGGTGAAGCGCTCCAGGCTTTCATGATAAAT | + |
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Preference number: 6 (lower is better) Translates to: PHHVGQSDISQI*TGEALQAFMIN Trigger: ATTTATCATGAAAGCCTGGAGCGCTTCACCGGTTCAGATTTGGCTAATGTCACTTTGACCTACGTGATGCGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001040.7 ENSMUST00000215077.2 |
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