Pregenerated sensors for ICAM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001029Ensembl transcript IDs: ENSMUST00000001055.15, ENSMUST00000106813.9, ENSMUST00000141146.2, ENSMUST00000173795.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTATTGAGGCTAAAAAGGAGAGGAAATGTCCCCCGCATCTGCTGCTaGCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTTGAAGGT | + |
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Preference number: 1 (lower is better) Translates to: VLRLKRRGNVPRICC*RHSPSASAEPHLEG Trigger: ACCTTCAAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCTCCTTTTTAGCCTCAATAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| 3UTR GCA 90 bp | TTTGTATTGAGGCTAAAAAGGAGAGGAAATGTCCCCCGCATCTGCTaGTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTTGAA | + |
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Preference number: 1 (lower is better) Translates to: FVLRLKRRGNVPRIC*CRHSPSASAEPHLE Trigger: TTCAAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCTCCTTTTTAGCCTCAATACAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| 3UTR GCA 90 bp | ATATTTGTATTGAGGCTAAAAAGGAGAGGAAATGTCCCCCGCATCTaGTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTT | + |
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Preference number: 1 (lower is better) Translates to: IFVLRLKRRGNVPRI*CCRHSPSASAEPHL Trigger: AAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCTCCTTTTTAGCCTCAATACAAATAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| 3UTR GCA 72 bp | CTAAAAAGGAGAGGAAATGTCCCCCGCATCTGCTGCTaGCGCCACAGTCCTTCAGCCAGTGCCGAACCACAC | + |
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Preference number: 3 (lower is better) Translates to: LKRRGNVPRICC*RHSPSASAEPH Trigger: GTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCTCCTTTTTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| 3UTR GCA 72 bp | AGGCTAAAAAGGAGAGGAAATGTCCCCCGCATCTGCTaGTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCA | + |
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Preference number: 3 (lower is better) Translates to: RLKRRGNVPRIC*CRHSPSASAEP Trigger: TGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCTCCTTTTTAGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| 3UTR GCA 72 bp | TTGAGGCTAAAAAGGAGAGGAAATGTCCCCCGCATCTaGTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAA | + |
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Preference number: 3 (lower is better) Translates to: LRLKRRGNVPRI*CCRHSPSASAE Trigger: TTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCTCCTTTTTAGCCTCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CCA 90 bp | TCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCGTGGCTGTGGCCTCTTaGGGGACAGTTTCTGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: SPASAAAATVLQPVPNHTVAVAS*GTVSAP Trigger: GGGAGCAGAAACTGTCCCCCAAGAGGCCACAGCCAC...GGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR TCA 90 bp | AGGAAATGTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAGGAGCAGAGAGAGGGTaGGCCTCTCAAGGGGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: RKCPPHLLLPPQSFSQCRGAERG*ASQGAA Trigger: TGCAGCCCCTTGAGAGGCTCACCCTCTCTCTGCTCC...TCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR GCA 90 bp | AGAGGAAATGTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCCTAGCACCCCGTAGGTaGCTGTCCGTCTTCTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: RGNVPRICCCRHSPSASALAPRR*LSVFCA Trigger: GGCACAGAAGACGGACAGGCACCTACGGGGTGCTAG...GGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR TCA 90 bp | GAAATGTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACGCTGCAGCTTCAGTGTaGCTTGAGCTGGAGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: EMSPASAAAATVLQPVPNAAASV*LELEAG Trigger: ACCAGCCTCCAGCTCAAGTCACACTGAAGCTGCAGC...GTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR TCA 90 bp | GAGGAAATGTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGGCTCCCCCAAAGGTCTaGTTCTTCAGGGTCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: EEMSPASAAAATVLQPVPAPPKV*FFRVSL Trigger: CAGAGAGACCCTGAAGAATCAGACCTTTGGGGGAGC...CGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR GCA 90 bp | AGAGGAAATGTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCTCTTCAGGGTCTCTCTaGCACGGAGCAGAGAGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: RGNVPRICCCRHSPSASASSGSL*HGAERG Trigger: CCCTCTCTCTGCTCCGTGGCAGAGAGACCCTGAAGA...GGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR TCA 90 bp | CCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTAGTTGGTGCTGCAGTTaGTTTTCCAAGACTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: PPHLLLPPQSFSQCRTTPSWCCS*FSKTLW Trigger: CCACAGAGTCTTGGAAAATCAACTGCAGCACCAACT...AGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR TCA 90 bp | TCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTTGAAGGTGTCAGAGCTGTGCTGTTaGACGTGGCTGTGGCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: SAAAATVLQPVPNHTLKVSELCC*TWLWPL Trigger: AAGAGGCCACAGCCACGTTCAACAGCACAGCTCTGA...CACCTTCAAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGA 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CCA 90 bp | CCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTCCCGAACACGTGAAATaGCAAAAGAAGACCGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: PPHLLLPPQSFSQCRTTPPEHVK*QKKTVS Trigger: AGACACGGTCTTCTTTTGCCATTTCACGTGTTCGGG...AGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CCA 90 bp | AGAGGAAATGTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCAGATCCAGCTCAGCCTaGCAGGAAAAGTTGAGACCG | + |
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Preference number: 4 (lower is better) Translates to: RGNVPRICCCRHSPSASARSSSA*QEKLRP Trigger: CGGTCTCAACTTTTCCTGCCAGGCTGAGCTGGATCT...GGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR TCA 90 bp | TGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTTGAAGGTGCCATGCCGTGCACTCAATGGTaGAGTCTTCACCCACAAACA | + |
|
Preference number: 4 (lower is better) Translates to: CCRHSPSASAEPHLEGAMPCTQW*SLHPQT Trigger: TGTTTGTGGGTGAAGACTTCACCATTGAGTGCACGG...CATGGCACCTTCAAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR GCA 90 bp | AGGAAATGTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGACGTCTTCTGTGCCAGTaGTGGCCAAAGATAAAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: RKCPPHLLLPPQSFSQCRRLLCQ*WPKIKH Trigger: ATGCTTTATCTTTGGCCAGCACTGGCACAGAAGACG...TCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGACATTTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CCA 90 bp | CCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTTGATGATGATGACCATTTaGTTGTCCTGCATCGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PASAAAATVLQPVPNHTLMMMTI*LSCIGS Trigger: TGAGCCGATGCAGGACAACCAAATGGTCATCATCAT...CAAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR TCA 90 bp | CGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTTGAATGTTTCCACTTCCCTTaGGGATGCTCTTCCAACATT | + |
|
Preference number: 4 (lower is better) Translates to: RICCCRHSPSASAEPHLECFHFP*GCSSNI Trigger: AATGTTGGAAGAGCATCCTCAAGGGAAGTGGAAACA...TTCAAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CCA 90 bp | AATCCAGATATTTGTATTGAGGCTAAAAAGGAGAGGAAATGTCCCCCGCATCTGCAGTGTGACTTGAGCTaGAGGCTGGTACACCCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: NPDICIEAKKERKCPPHLQCDLS*RLVHPD Trigger: ATCAGGGTGTACCAGCCTCCAGCTCAAGTCACACTG...CAGATGCGGGGGACATTTCCTCTCCTTTTTAGCCTCAATACAAATATCTGGATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR GCA 90 bp | AATCCAGATATTTGTATTGAGGCTAAAAAGGAGAGGAAATGTCCCCCGCATCTGTTGGGGGACAGTTTCTaGTCCCCCAAAGGTCTGATT | + |
|
Preference number: 4 (lower is better) Translates to: NPDICIEAKKERKCPPHLLGDSF*SPKGLI Trigger: AATCAGACCTTTGGGGGAGCAGAAACTGTCCCCCAA...CAGATGCGGGGGACATTTCCTCTCCTTTTTAGCCTCAATACAAATATCTGGATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CCA 90 bp | AATCCAGATATTTGTATTGAGGCTAAAAAGGAGAGGAAATGTCCCCCGCATCTGCTTCTGTGCCAGTGCTaGCCAAAGATAAAGCATAGC | + |
|
Preference number: 4 (lower is better) Translates to: NPDICIEAKKERKCPPHLLLCQC*PKIKHS Trigger: GCTATGCTTTATCTTTGGCCAGCACTGGCACAGAAG...CAGATGCGGGGGACATTTCCTCTCCTTTTTAGCCTCAATACAAATATCTGGATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CAA 90 bp | GTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACTCTGGGGCTGCGCAGTaGGTGCTGCAGTTGATTTTC | + |
|
Preference number: 5 (lower is better) Translates to: VPRICCCRHSPSASAEPHSGAAQ*VLQLIF Trigger: GAAAATCAACTGCAGCACCAACTGCGCAGCCCCAGA...GTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS TCA 90 bp | AGGTCTGATTCTTCAGGGTCTCTCTGCCACGGAGCAGAGAGAGGGTaGGCCTCTCAAGGGGCTGCACAGGGGACACCGTGCACTCAATGG | + |
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Preference number: 5 (lower is better) Translates to: RSDSSGSLCHGAERG*ASQGAAQGTPCTQW Trigger: CCATTGAGTGCACGGTGTCCCCTGTGCAGCCCCTTGAGAGGCTCACCCTCTCTCTGCTCCGTGGCAGAGAGACCCTGAAGAATCAGACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000173795.2 |
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| CDS TCA 90 bp | GTGGCTGTGGCCTCTTGGGGGACAGTTTCTGCTCCCCCAAAGGTCTaGTTCTTCAGGGTCTCTCTGCCACGGAGCAGAGAGAGGGTGAGC | + |
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Preference number: 5 (lower is better) Translates to: VAVASWGTVSAPPKV*FFRVSLPRSRERVS Trigger: GCTCACCCTCTCTCTGCTCCGTGGCAGAGAGACCCTGAAGAATCAGACCTTTGGGGGAGCAGAAACTGTCCCCCAAGAGGCCACAGCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000001055.15 ENSMUST00000173795.2 |
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| CDS-3UTR CAA 90 bp | TCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCGCCTGGCAGGAAAAGTaGAGACCGTCCTTTTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: SPASAAAATVLQPVPNHTAWQEK*RPSFFR Trigger: TCTGAAAAAGGACGGTCTCAACTTTTCCTGCCAGGC...GGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CAA 90 bp | GTCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACGATGATGATGACCATTaGGTTGTCCTGCATCGGCTC | + |
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Preference number: 5 (lower is better) Translates to: VPRICCCRHSPSASAEPHDDDDH*VVLHRL Trigger: GAGCCGATGCAGGACAACCAAATGGTCATCATCATC...GTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CAA 90 bp | TCCCCCGCATCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCCTGTTTCCACTTCCCTaGAGGATGCTCTTCCAACAT | + |
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Preference number: 5 (lower is better) Translates to: SPASAAAATVLQPVPNHTLFPLP*RMLFQH Trigger: ATGTTGGAAGAGCATCCTCAAGGGAAGTGGAAACAG...GGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGATGCGGGGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CAA 90 bp | TCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTTGAAGGTGCAGCTTCAGTGTGACTaGAGCTGGAGGCTGGTACAC | + |
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Preference number: 5 (lower is better) Translates to: SAAAATVLQPVPNHTLKVQLQCD*SWRLVH Trigger: GTGTACCAGCCTCCAGCTCAAGTCACACTGAAGCTG...CACCTTCAAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGA 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS-3UTR CAA 90 bp | TCTGCTGCTGCCGCCACAGTCCTTCAGCCAGTGCCGAACCACACCTTGAAGGTGTTCAGAGCTGTGCTGTaGAACGTGGCTGTGGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SAAAATVLQPVPNHTLKVFRAVL*NVAVAS Trigger: AGAGGCCACAGCCACGTTCAACAGCACAGCTCTGAA...CACCTTCAAGGTGTGGTTCGGCACTGGCTGAAGGACTGTGGCGGCAGCAGCAGA 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001055.15 |
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| CDS GCA 90 bp | AGCTGTGCTGTTGAACGTGGCTGTGGCCTCTTGGGGGACAGTTTCTaGTCCCCCAAAGGTCTGATTCTTCAGGGTCTCTCTGCCACGGAG | + |
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Preference number: 5 (lower is better) Translates to: SCAVERGCGLLGDSF*SPKGLILQGLSATE Trigger: CTCCGTGGCAGAGAGACCCTGAAGAATCAGACCTTTGGGGGAGCAGAAACTGTCCCCCAAGAGGCCACAGCCACGTTCAACAGCACAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000001055.15 ENSMUST00000173795.2 |
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| CDS CCA 90 bp | TTCCAACATTATTTTATTCGTGGGCGTCTCCAGGCCGCCCATGTCTaGGGCTGCGCAGTTGGTGCTGCAGTTGATTTTCCAAGACTCTGT | + |
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Preference number: 5 (lower is better) Translates to: FQHYFIRGRLQAAHV*GCAVGAAVDFPRLC Trigger: ACAGAGTCTTGGAAAATCAACTGCAGCACCAACTGCGCAGCCCCAGACATGGGCGGCCTGGAGACGCCCACGAATAAAATAATGTTGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000141146.2 |
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| CDS TCA 72 bp | TCTTCAGGGTCTCTCTGCCACGGAGCAGAGAGAGGGTaGGCCTCTCAAGGGGCTGCACAGGGGACACCGTGC | + |
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Preference number: 6 (lower is better) Translates to: SSGSLCHGAERG*ASQGAAQGTPC Trigger: GCACGGTGTCCCCTGTGCAGCCCCTTGAGAGGCTCACCCTCTCTCTGCTCCGTGGCAGAGAGACCCTGAAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000173795.2 |
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| CDS CAA 72 bp | GGCGTCTCCAGGCCGCCCATGTCTGGGGCTGCGCAGTaGGTGCTGCAGTTGATTTTCCAAGACTCTGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: GVSRPPMSGAAQ*VLQLIFQDSVA Trigger: AGCCACAGAGTCTTGGAAAATCAACTGCAGCACCAACTGCGCAGCCCCAGACATGGGCGGCCTGGAGACGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000141146.2 |
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| CDS GCA 72 bp | ATTCGTGGGCGTCTCCAGGCCGCCCATGTCTGGGGCTaGGCAGTTGGTGCTGCAGTTGATTTTCCAAGACTC | + |
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Preference number: 6 (lower is better) Translates to: IRGRLQAAHVWG*AVGAAVDFPRL Trigger: GAGTCTTGGAAAATCAACTGCAGCACCAACTGCGCAGCCCCAGACATGGGCGGCCTGGAGACGCCCACGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000141146.2 |
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| CDS CAA 72 bp | TTCTCACCAGACCCTTTCATGCGCTGTGGGAGCACCTaGCAGATAAACGGAGCCGCTGGCTCGCAGACCTGC | + |
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Preference number: 6 (lower is better) Translates to: FSPDPFMRCGST*QINGAAGSQTC Trigger: GCAGGTCTGCGAGCCAGCGGCTCCGTTTATCTGCAAGGTGCTCCCACAGCGCATGAAAGGGTCTGGTGAGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141146.2 |
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| CDS CAA 90 bp | GTCTTCACCCACAAACACCCGAGGCGGCTGCAGCTTCAGTGTGACTaGAGCTGGAGGCTGGTACACCCTGATGTTGAGACTCTCCGAGTG | + |
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Preference number: 6 (lower is better) Translates to: VFTHKHPRRLQLQCD*SWRLVHPDVETLRV Trigger: CACTCGGAGAGTCTCAACATCAGGGTGTACCAGCCTCCAGCTCAAGTCACACTGAAGCTGCAGCCGCCTCGGGTGTTTGTGGGTGAAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000173795.2 |
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| CDS TCA 72 bp | GCCTCTTGGGGGACAGTTTCTGCTCCCCCAAAGGTCTaGTTCTTCAGGGTCTCTCTGCCACGGAGCAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: ASWGTVSAPPKV*FFRVSLPRSRE Trigger: CTCTCTGCTCCGTGGCAGAGAGACCCTGAAGAATCAGACCTTTGGGGGAGCAGAAACTGTCCCCCAAGAGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000001055.15 ENSMUST00000173795.2 |
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| CDS CCA 72 bp | CTCAAAGGCCTTCTCACCAGACCCTTTCATGCGCTGTaGGAGCACCTTGCAGATAAACGGAGCCGCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: LKGLLTRPFHAL*EHLADKRSRWL Trigger: GAGCCAGCGGCTCCGTTTATCTGCAAGGTGCTCCCACAGCGCATGAAAGGGTCTGGTGAGAAGGCCTTTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141146.2 |
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| CDS TCA 72 bp | ACAAACACCCGAGGCGGCTGCAGCTTCAGTGTGACTTaGGCTGGAGGCTGGTACACCCTGATGTTGAGACTC | + |
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Preference number: 6 (lower is better) Translates to: TNTRGGCSFSVT*AGGWYTLMLRL Trigger: GAGTCTCAACATCAGGGTGTACCAGCCTCCAGCTCAAGTCACACTGAAGCTGCAGCCGCCTCGGGTGTTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000173795.2 |
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| CDS CCA 72 bp | TGGTACTCCGAGATGCTGCGGATGATATACCCACCATaGGGCCGTAGATCCAGCTCAGCCTGGCAGGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: WYSEMLRMIYPP*GRRSSSAWQEK Trigger: CTTTTCCTGCCAGGCTGAGCTGGATCTACGGCCCCATGGTGGGTATATCATCCGCAGCATCTCGGAGTACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001055.15 ENSMUST00000173795.2 |
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| CDS CAA 72 bp | CACAAACACCCGAGGCGGCTGCAGCTTCAGTGTGACTaGAGCTGGAGGCTGGTACACCCTGATGTTGAGACT | + |
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Preference number: 6 (lower is better) Translates to: HKHPRRLQLQCD*SWRLVHPDVET Trigger: AGTCTCAACATCAGGGTGTACCAGCCTCCAGCTCAAGTCACACTGAAGCTGCAGCCGCCTCGGGTGTTTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000173795.2 |
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| CDS CAA 90 bp | TTATTCGTGGGCGTCTCCAGGCCGCCCATGTCTGGGGCTGCGCAGTaGGTGCTGCAGTTGATTTTCCAAGACTCTGTGGCTTCTACTATC | + |
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Preference number: 6 (lower is better) Translates to: LFVGVSRPPMSGAAQ*VLQLIFQDSVASTI Trigger: GATAGTAGAAGCCACAGAGTCTTGGAAAATCAACTGCAGCACCAACTGCGCAGCCCCAGACATGGGCGGCCTGGAGACGCCCACGAATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000141146.2 |
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| CDS GCA 72 bp | GTTGAACGTGGCTGTGGCCTCTTGGGGGACAGTTTCTaGTCCCCCAAAGGTCTGATTCTTCAGGGTCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: VERGCGLLGDSF*SPKGLILQGLS Trigger: AGAGAGACCCTGAAGAATCAGACCTTTGGGGGAGCAGAAACTGTCCCCCAAGAGGCCACAGCCACGTTCAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000001055.15 ENSMUST00000173795.2 |
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| CDS CCA 72 bp | TATTTTATTCGTGGGCGTCTCCAGGCCGCCCATGTCTaGGGCTGCGCAGTTGGTGCTGCAGTTGATTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: YFIRGRLQAAHV*GCAVGAAVDFP Trigger: TGGAAAATCAACTGCAGCACCAACTGCGCAGCCCCAGACATGGGCGGCCTGGAGACGCCCACGAATAAAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000141146.2 |
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| CDS CAA 72 bp | CCGCCCATGTCTGGGGCTGCGCAGTTGGTGCTGCAGTaGATTTTCCAAGACTCTGTGGCTTCTACTATCTGC | + |
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Preference number: 6 (lower is better) Translates to: PPMSGAAQLVLQ*IFQDSVASTIC Trigger: GCAGATAGTAGAAGCCACAGAGTCTTGGAAAATCAACTGCAGCACCAACTGCGCAGCCCCAGACATGGGCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000141146.2 |
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| CDS TCA 72 bp | CGCCCATGTCTGGGGCTGCGCAGTTGGTGCTGCAGTTaGTTTTCCAAGACTCTGTGGCTTCTACTATCTGCT | + |
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Preference number: 6 (lower is better) Translates to: RPCLGLRSWCCS*FSKTLWLLLSA Trigger: AGCAGATAGTAGAAGCCACAGAGTCTTGGAAAATCAACTGCAGCACCAACTGCGCAGCCCCAGACATGGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000141146.2 |
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| CDS TCA 72 bp | AGACTTCAAGGATCTGGTACTCCGAGATGCTGCGGATaGTATACCCACCATGGGGCCGTAGATCCAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: RLQGSGTPRCCG*YTHHGAVDPAQ Trigger: CTGAGCTGGATCTACGGCCCCATGGTGGGTATATCATCCGCAGCATCTCGGAGTACCAGATCCTTGAAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001055.15 ENSMUST00000173795.2 |
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| CDS GCA 72 bp | CTAGGAGTGAGGCTCGTGAGTTTTCTTTCCCCACGTTaGCAAGAAGTGCTACCTCTAACCCTCTCAGCCAAT | + |
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Preference number: 6 (lower is better) Translates to: LGVRLVSFLSPR*QEVLPLTLSAN Trigger: ATTGGCTGAGAGGGTTAGAGGTAGCACTTCTTGGCAACGTGGGGAAAGAAAACTCACGAGCCTCACTCCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173795.2 |
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| CDS CCA 72 bp | CCATATGTAGACCTCAAAGGCCTTCTCACCAGACCCTaGGCTGTAGAACAGGATAAGAAGAGACAGGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PYVDLKGLLTRP*AVEQDKKRQAP Trigger: TGGAGCCTGTCTCTTCTTATCCTGTTCTACAGCCCAGGGTCTGGTGAGAAGGCCTTTGAGGTCTACATATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 |
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| CDS CAA 72 bp | CCCGAACACGTGAAATGGCAAAAGAAGACCGTGTCTTaGGAGACGTTTGAGACTAAGAACTGTTTCCACTTC | + |
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Preference number: 6 (lower is better) Translates to: PEHVKWQKKTVS*ETFETKNCFHF Trigger: GAAGTGGAAACAGTTCTTAGTCTCAAACGTCTCCAAAGACACGGTCTTCTTTTGCCATTTCACGTGTTCGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001055.15 ENSMUST00000106813.9 ENSMUST00000141146.2 ENSMUST00000173795.2 |
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