Pregenerated sensors for IBSP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029306Ensembl transcript IDs: ENSMUST00000031246.9
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGAGACATTTACTTCCTCCTGTATACAGTGACTGTGCCCTCCTTAGTCAAACCTGCTCATAGATCTGTGTaGTGCTTGATCAATAGCCCT | + |
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Preference number: 2 (lower is better) Translates to: GDIYFLLYTVTVPSLVKPAHRSV*CLINSP Trigger: AGGGCTATTGATCAAGCAGCACACAGATCTATGAGC...AGGTTTGACTAAGGAGGGCACAGTCACTGTATACAGGAGGAAGTAAATGTCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR CAA 90 bp | TCCCAAAGTATCCATCTAGTCCCAGCTCATAGATCTGTGTGCTGCTaGATCAATAGCCCTGATTTACTAAGACTCTTCAATGACACACCT | + |
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Preference number: 2 (lower is better) Translates to: SQSIHLVPAHRSVCC*INSPDLLRLFNDTP Trigger: AGGTGTGTCATTGAAGAGTCTTAGTAAATCAGGGCTATTGATCAAGCAGCACACAGATCTATGAGCTGGGACTAGATGGATACTTTGGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR-3UTR TCA 90 bp | AATCTGGCAACTTTAAGGGGAGACATTTACTTCCTCCTGTATACAGTGACTGTGTGCACCTTCCTGAGTTaGATTTTGAAAATGGTAGCC | + |
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Preference number: 2 (lower is better) Translates to: NLATLRGDIYFLLYTVTVCTFLS*ILKMVA Trigger: GGCTACCATTTTCAAAATTCAACTCAGGAAGGTGCA...CACAGTCACTGTATACAGGAGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR-3UTR GCA 90 bp | ATGTATTCATGCTTGTTAAATCTGGCAACTTTAAGGGGAGACATTTACTTCCTCACAAACAAAAGCATTTaGGGAAATCACTCTGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: MYSCLLNLATLRGDIYFLTNKSI*GNHSGA Trigger: AGCCCCAGAGTGATTTCCGCAAATGCTTTTGTTTGT...GAGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATTTAACAAGCATGAATACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR-3UTR TCA 90 bp | CATGTATTCATGCTTGTTAAATCTGGCAACTTTAAGGGGAGACATTTACTTCCTGCCATTCAGATGTATTaGAGAAAGAATGCTTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: HVFMLVKSGNFKGRHLLPAIQMY*RKNASR Trigger: TCTGGAAGCATTCTTTCTTCAATACATCTGAATGGC...AGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATTTAACAAGCATGAATACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR-3UTR CAA 90 bp | TCTCTCATTAGGAGCCTTCTTATACAGGGTATGTTTGCGCAGTTAGCAATAGCATACAAACAAAAGCATTaGCGGAAATCACTCTGGGGC | + |
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Preference number: 3 (lower is better) Translates to: SLIRSLLIQGMFAQLAIAYKQKH*RKSLWG Trigger: GCCCCAGAGTGATTTCCGCAAATGCTTTTGTTTGTA...TGCTATTGCTAACTGCGCAAACATACCCTGTATAAGAAGGCTCCTAATGAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR GCA 72 bp | AGTATCCATCTAGTCCCAGCTCATAGATCTGTGTGCTaGTTGATCAATAGCCCTGATTTACTAAGACTCTTC | + |
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Preference number: 3 (lower is better) Translates to: SIHLVPAHRSVC*LINSPDLLRLF Trigger: GAAGAGTCTTAGTAAATCAGGGCTATTGATCAAGCAGCACACAGATCTATGAGCTGGGACTAGATGGATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR TCA 72 bp | GCCCTCCTTAGTCAAACCTTAGCCATTCAGATGTATTaGAGAAAGAATGCTTCCAGATCCTCTGAGTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: ALLSQTLAIQMY*RKNASRSSEFK Trigger: TTTAAACTCAGAGGATCTGGAAGCATTCTTTCTTCAATACATCTGAATGGCTAAGGTTTGACTAAGGAGGGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR-3UTR CAA 90 bp | ATGTATTCATGCTTGTTAAATCTGGCAACTTTAAGGGGAGACATTTACTTCCTCTGCACATCTGTTATATaGCACCTTCCTGAGTTGAAT | + |
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Preference number: 3 (lower is better) Translates to: MYSCLLNLATLRGDIYFLCTSVI*HLPELN Trigger: ATTCAACTCAGGAAGGTGCAATATAACAGATGTGCA...GAGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATTTAACAAGCATGAATACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR TCA 90 bp | AGACATTTACTTCCTCCTGTATACAGTGACTGTGCCCTCCTTAGTCAAACCTTACGGTGCTGCTTTTTCTaGTCGGTGGCGAGGTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: RHLLPPVYSDCALLSQTLRCCFF*SVARWS Trigger: GGACCACCTCGCCACCGATCAGAAAAAGCAGCACCG...TAAGGTTTGACTAAGGAGGGCACAGTCACTGTATACAGGAGGAAGTAAATGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR GCA 90 bp | AAGAAGAAGCCCACTACAAACAAAAGCATTTGCGGAAATCACTCTGGGGCTGTACACTGGTCAGTTCCCTaGCCCCTGTGGTTCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: KKKPTTNKSICGNHSGAVHWSVP*PLWFLL Trigger: CAGAAGGAACCACAGGGGGCAGGGAACTGACCAGTG...TACAGCCCCAGAGTGATTTCCGCAAATGCTTTTGTTTGTAGTGGGCTTCTTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR GCA 90 bp | AATGGTAGCCAGATGATAAGACAGAATGGGGAATTCAAATGGGGAAATTCCCCCCCCTGTGGTTCCTTCTaGACCTGCTTCAGTGACGCT | + |
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Preference number: 4 (lower is better) Translates to: NGSQMIRQNGEFKWGNSPPCGSF*TCFSDA Trigger: AGCGTCACTGAAGCAGGTGCAGAAGGAACCACAGGG...GGGGGAATTTCCCCATTTGAATTCCCCATTCTGTCTTATCATCTGGCTACCATT 49% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CCA 90 bp | GGAGACATTTACTTCCTCCTGTATACAGTGACTGTGCCCTCCTTAGTCAAACCTAGAAGGACAGCTGTCTaGGTGCCAACACTGGTCAGT | + |
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Preference number: 4 (lower is better) Translates to: GDIYFLLYTVTVPSLVKPRRTAV*VPTLVS Trigger: ACTGACCAGTGTTGGCACCCAGACAGCTGTCCTTCT...AGGTTTGACTAAGGAGGGCACAGTCACTGTATACAGGAGGAAGTAAATGTCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR TCA 90 bp | AATCTGGCAACTTTAAGGGGAGACATTTACTTCCTCCTGTATACAGTGACTGTGGGTGGGGTTGTCTGCTaGAACCCGTTCAGAAGGACA | + |
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Preference number: 4 (lower is better) Translates to: NLATLRGDIYFLLYTVTVGGVVC*NPFRRT Trigger: TGTCCTTCTGAACGGGTTTCAGCAGACAACCCCACC...CACAGTCACTGTATACAGGAGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR TCA 90 bp | AAGAAGAAGCCCACTACAAACAAAAGCATTTGCGGAAATCACTCTGGGGCTGTAGTCTCCATTTTCTTCTaGAGAGTCACTGCCTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: KKKPTTNKSICGNHSGAVVSIFF*RVTASL Trigger: CAGGGAGGCAGTGACTCTTCAGAAGAAAATGGAGAC...TACAGCCCCAGAGTGATTTCCGCAAATGCTTTTGTTTGTAGTGGGCTTCTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR TCA 90 bp | TCTCTCATTAGGAGCCTTCTTATACAGGGTATGTTTGCGCAGTTAGCAATAGCAGTTTTCCTCTTCGTTTaGAGTCTCCTCTTCCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: SLIRSLLIQGMFAQLAIAVFLFV*SLLFLP Trigger: GGGGAGGAAGAGGAGACTTCAAACGAAGAGGAAAAC...TGCTATTGCTAACTGCGCAAACATACCCTGTATAAGAAGGCTCCTAATGAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CCA 90 bp | GGAGACATTTACTTCCTCCTGTATACAGTGACTGTGCCCTCCTTAGTCAAACCTATAAAGAAAGTAGCGTaGCCGGTACTTAAAGACCCC | + |
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Preference number: 4 (lower is better) Translates to: GDIYFLLYTVTVPSLVKPIKKVA*PVLKDP Trigger: GGGGTCTTTAAGTACCGGCCACGCTACTTTCTTTAT...AGGTTTGACTAAGGAGGGCACAGTCACTGTATACAGGAGGAAGTAAATGTCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CCA 90 bp | TCTCTCATTAGGAGCCTTCTTATACAGGGTATGTTTGCGCAGTTAGCAATAGCATTACACCCGAGAGTGTaGAAAGTGTGGAGTTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: SLIRSLLIQGMFAQLAIALHPRV*KVWSSL Trigger: CAGAGAACTCCACACTTTCCACACTCTCGGGTGTAA...TGCTATTGCTAACTGCGCAAACATACCCTGTATAAGAAGGCTCCTAATGAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CCA 90 bp | TCTCTCATTAGGAGCCTTCTTATACAGGGTATGTTTGCGCAGTTAGCAATAGCAGCTTTCCTTCACTTTTaGAGCCCTGCTTTCTGCATC | + |
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Preference number: 4 (lower is better) Translates to: SLIRSLLIQGMFAQLAIAAFLHF*SPAFCI Trigger: GATGCAGAAAGCAGGGCTCCAAAAGTGAAGGAAAGC...TGCTATTGCTAACTGCGCAAACATACCCTGTATAAGAAGGCTCCTAATGAGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR GCA 90 bp | CATGTATTCATGCTTGTTAAATCTGGCAACTTTAAGGGGAGACATTTACTTCCTCTTCTGAAGAGTCACTaGCTCCCTGGACTGGAAACC | + |
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Preference number: 4 (lower is better) Translates to: HVFMLVKSGNFKGRHLLPLLKSH*LPGLET Trigger: GGTTTCCAGTCCAGGGAGGCAGTGACTCTTCAGAAG...AGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATTTAACAAGCATGAATACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR GCA 90 bp | AACATGTATTCATGCTTGTTAAATCTGGCAACTTTAAGGGGAGACATTTACTTCGGTTCCTTCTGCACCTaGTTCAGTGACGCTTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: NMYSCLLNLATLRGDIYFGSFCT*FSDACL Trigger: GAGGCAAGCGTCACTGAAGCAGGTGCAGAAGGAACC...GAAGTAAATGTCTCCCCTTAAAGTTGCCAGATTTAACAAGCATGAATACATGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CCA 90 bp | CATGTATTCATGCTTGTTAAATCTGGCAACTTTAAGGGGAGACATTTACTTCCTTCAAAAGTCTGTGCTTaGGGTGTGGTCTCTGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: HVFMLVKSGNFKGRHLLPSKVCA*GVVSAP Trigger: CGGAGCAGAGACCACACCCCAAGCACAGACTTTTGA...AGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATTTAACAAGCATGAATACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR CAA 72 bp | ATCCATCTAGTCCCAGCTCATAGATCTGTGTGCTGCTaGATCAATAGCCCTGATTTACTAAGACTCTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: IHLVPAHRSVCC*INSPDLLRLFN Trigger: ATTGAAGAGTCTTAGTAAATCAGGGCTATTGATCAAGCAGCACACAGATCTATGAGCTGGGACTAGATGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR GCA 90 bp | AATCTGGCAACTTTAAGGGGAGACATTTACTTCCTCCTGTATACAGTGACTGTGGTTTTCATCCACTTCTaGTTCTTCGTTCTCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: NLATLRGDIYFLLYTVTVVFIHF*FFVLIF Trigger: GAAAATGAGAACGAAGAAGCAGAAGTGGATGAAAAC...CACAGTCACTGTATACAGGAGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR TCA 90 bp | CATGTATTCATGCTTGTTAAATCTGGCAACTTTAAGGGGAGACATTTACTTCCTCAGAATCCTCTGCTTTaGTTCTTCGATGGAAATTTT | + |
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Preference number: 4 (lower is better) Translates to: HVFMLVKSGNFKGRHLLPQNPLL*FFDGNF Trigger: AAAATTTCCATCGAAGAATCAAAGCAGAGGATTCTG...AGGAAGTAAATGTCTCCCCTTAAAGTTGCCAGATTTAACAAGCATGAATACATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| 3UTR CAA 72 bp | GGTGTGATAAAGGAACGTCACACATCATATATAGTGTaGTTAATAAATCTCTCATTAGGAGCCTTCTTATAC | + |
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Preference number: 4 (lower is better) Translates to: GVIKERHTSYIV*LINLSLGAFLY Trigger: GTATAAGAAGGCTCCTAATGAGAGATTTATTAACAACACTATATATGATGTGTGACGTTCCTTTATCACACC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 90 bp | CGCTTGCCTCCTCTGCTTCGGCTTCTTCTCCGTTGTCTCCTCCGCTaGTGCCATTCCCGCCATCCACCTCCGTGGAGTTGGTGCTGGTGC | + |
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Preference number: 5 (lower is better) Translates to: RLPPLLRLLLRCLLR*CHSRHPPPWSWCWC Trigger: GCACCAGCACCAACTCCACGGAGGTGGATGGCGGGAATGGCAGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAGAGGAGGCAAGCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 90 bp | CCCTGTGGTTCCTTCTGCACCTGCTTCAGTGACGCTTGCCTCCTCTaGTTCGGCTTCTTCTCCGTTGTCTCCTCCGCTGCTGCCATTCCC | + |
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Preference number: 5 (lower is better) Translates to: PCGSFCTCFSDACLL*FGFFSVVSSAAAIP Trigger: GGGAATGGCAGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAGAGGAGGCAAGCGTCACTGAAGCAGGTGCAGAAGGAACCACAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 90 bp | TTCCCTGCCCCCTGTGGTTCCTTCTGCACCTGCTTCAGTGACGCTTaGCTCCTCTGCTTCGGCTTCTTCTCCGTTGTCTCCTCCGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: FPAPCGSFCTCFSDA*LLCFGFFSVVSSAA Trigger: AGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAGAGGAGGCAAGCGTCACTGAAGCAGGTGCAGAAGGAACCACAGGGGGCAGGGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 90 bp | GTGGGGTTGTCTGCTGAAACCCGTTCAGAAGGACAGCTGTCTGGGTaGCAACACTGGTCAGTTCCCTGCCCCCTGTGGTTCCTTCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: VGLSAETRSEGQLSG*QHWSVPCPLWFLLH Trigger: GTGCAGAAGGAACCACAGGGGGCAGGGAACTGACCAGTGTTGGCACCCAGACAGCTGTCCTTCTGAACGGGTTTCAGCAGACAACCCCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CCA 90 bp | TCTGCTGAAACCCGTTCAGAAGGACAGCTGTCTGGGTGCCAACACTaGTCAGTTCCCTGCCCCCTGTGGTTCCTTCTGCACCTGCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: SAETRSEGQLSGCQH*SVPCPLWFLLHLLQ Trigger: CTGAAGCAGGTGCAGAAGGAACCACAGGGGGCAGGGAACTGACCAGTGTTGGCACCCAGACAGCTGTCCTTCTGAACGGGTTTCAGCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS TCA 90 bp | TGCCATTCCCGCCATCCACCTCCGTGGAGTTGGTGCTGGTGCCGTTaGCCGCCAGCTCGTTTTCATCCACTTCTGCTTCTTCGTTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: CHSRHPPPWSWCWCR*PPARFHPLLLLRSH Trigger: ATGAGAACGAAGAAGCAGAAGTGGATGAAAACGAGCTGGCGGTCAACGGCACCAGCACCAACTCCACGGAGGTGGATGGCGGGAATGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS TCA 90 bp | TTCCTCCCCCTCCTCTTCGGAACTATCGCCGTCTCCATTTTCTTCTaGAGAGTCACTGCCTCCCTGGACTGGAAACCGTTTCAGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: FLPLLFGTIAVSIFF*RVTASLDWKPFQRR Trigger: CCTCCTCTGAAACGGTTTCCAGTCCAGGGAGGCAGTGACTCTTCAGAAGAAAATGGAGACGGCGATAGTTCCGAAGAGGAGGGGGAGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 90 bp | CTTCTTCTTCTTCTTCCTCGTCGCTTTCCTTCACTTTTGGAGCCCTaGTTTCTGCATCTCCAGCCTTCTTGGGCAGTTGGAGTGCCGCTA | + |
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Preference number: 5 (lower is better) Translates to: LLLLLPRRFPSLLEP*FLHLQPSWAVGVPL Trigger: TAGCGGCACTCCAACTGCCCAAGAAGGCTGGAGATGCAGAAAGCAGGGCTCCAAAAGTGAAGGAAAGCGACGAGGAAGAAGAAGAAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CAA 90 bp | AATGGTAGCCAGATGATAAGACAGAATGGGGAATTCAAATGGGGAAATTCCCCCTCCACCTCCGTGGAGTaGGTGCTGGTGCCGTTGACC | + |
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Preference number: 5 (lower is better) Translates to: NGSQMIRQNGEFKWGNSPSTSVE*VLVPLT Trigger: GGTCAACGGCACCAGCACCAACTCCACGGAGGTGGA...GGGGGAATTTCCCCATTTGAATTCCCCATTCTGTCTTATCATCTGGCTACCATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CCA 90 bp | CTCTTCCTCTTCTTCTTCTTCTTCCTCGTCGCTTTCCTTCACTTTTaGAGCCCTGCTTTCTGCATCTCCAGCCTTCTTGGGCAGTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LFLFFFFFLVAFLHF*SPAFCISSLLGQLE Trigger: CTCCAACTGCCCAAGAAGGCTGGAGATGCAGAAAGCAGGGCTCCAAAAGTGAAGGAAAGCGACGAGGAAGAAGAAGAAGAAGAGGAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CAA 90 bp | AATGGTAGCCAGATGATAAGACAGAATGGGGAATTCAAATGGGGAAATTCCCCCTCGGCTTCTTCTCCGTaGTCTCCTCCGCTGCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: NGSQMIRQNGEFKWGNSPSASSP*SPPLLP Trigger: TGGCAGCAGCGGAGGAGACAACGGAGAAGAAGCCGA...GGGGGAATTTCCCCATTTGAATTCCCCATTCTGTCTTATCATCTGGCTACCATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CCA 90 bp | ACACCCGAGAGTGTGGAAAGTGTGGAGTTCTCTGCCTCCGCCTCCTaGTCTTCATTCCCCTCAGAATCTTCATTGTTTTCCTCTTCGTTT | + |
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Preference number: 5 (lower is better) Translates to: TPESVESVEFSASAS*SSFPSESSLFSSSF Trigger: AAACGAAGAGGAAAACAATGAAGATTCTGAGGGGAATGAAGACCAGGAGGCGGAGGCAGAGAACTCCACACTTTCCACACTCTCGGGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CAA 90 bp | AGACATTTACTTCCTCCTGTATACAGTGACTGTGCCCTCCTTAGTCAAACCTTAGCATCTCCAGCCTTCTaGGGCAGTTGGAGTGCCGCT | + |
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Preference number: 5 (lower is better) Translates to: RHLLPPVYSDCALLSQTLASPAF*GSWSAA Trigger: AGCGGCACTCCAACTGCCCAAGAAGGCTGGAGATGC...TAAGGTTTGACTAAGGAGGGCACAGTCACTGTATACAGGAGGAAGTAAATGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CAA 90 bp | AATGGTAGCCAGATGATAAGACAGAATGGGGAATTCAAATGGGGAAATTCCCCCCGCTTTCCTTCACTTTaGGAGCCCTGCTTTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: NGSQMIRQNGEFKWGNSPRFPSL*EPCFLH Trigger: ATGCAGAAAGCAGGGCTCCAAAAGTGAAGGAAAGCG...GGGGGAATTTCCCCATTTGAATTCCCCATTCTGTCTTATCATCTGGCTACCATT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CAA 90 bp | AATGGTAGCCAGATGATAAGACAGAATGGGGAATTCAAATGGGGAAATTCCCCCCCCTCAGAATCTTCATaGTTTTCCTCTTCGTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: NGSQMIRQNGEFKWGNSPPSESS*FSSSFE Trigger: TTCAAACGAAGAGGAAAACAATGAAGATTCTGAGGG...GGGGGAATTTCCCCATTTGAATTCCCCATTCTGTCTTATCATCTGGCTACCATT 42% GC, longest homopolymer 8 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS-3UTR CAA 90 bp | AATGGTAGCCAGATGATAAGACAGAATGGGGAATTCAAATGGGGAAATTCCCCCTCAGAATCCTCTGCTTaGATTCTTCGATGGAAATTT | + |
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Preference number: 5 (lower is better) Translates to: NGSQMIRQNGEFKWGNSPSESSA*ILRWKF Trigger: AAATTTCCATCGAAGAATCAAAGCAGAGGATTCTGA...GGGGGAATTTCCCCATTTGAATTCCCCATTCTGTCTTATCATCTGGCTACCATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CAA 90 bp | CCTGCTTCAGTGACGCTTGCCTCCTCTGCTTCGGCTTCTTCTCCGTaGTCTCCTCCGCTGCTGCCATTCCCGCCATCCACCTCCGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: PASVTLASSASASSP*SPPLLPFPPSTSVE Trigger: CTCCACGGAGGTGGATGGCGGGAATGGCAGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAGAGGAGGCAAGCGTCACTGAAGCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | CTGCTTCGGCTTCTTCTCCGTTGTCTCCTCCGCTGCTaGCATTCCCGCCATCCACCTCCGTGGAGTTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: LLRLLLRCLLRC*HSRHPPPWSWC Trigger: GCACCAACTCCACGGAGGTGGATGGCGGGAATGGCAGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | CCTCTGCTTCGGCTTCTTCTCCGTTGTCTCCTCCGCTaGTGCCATTCCCGCCATCCACCTCCGTGGAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: PLLRLLLRCLLR*CHSRHPPPWSW Trigger: CCAACTCCACGGAGGTGGATGGCGGGAATGGCAGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CCA 72 bp | GATCGGTGGCGAGGTGGTCCCATAGGCTTCGGGCGGTaGGGTTGTCTGCTGAAACCCGTTCAGAAGGACAGC | + |
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Preference number: 6 (lower is better) Translates to: DRWRGGPIGFGR*GCLLKPVQKDS Trigger: GCTGTCCTTCTGAACGGGTTTCAGCAGACAACCCCACCGCCCGAAGCCTATGGGACCACCTCGCCACCGATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CAA 72 bp | GTGACGCTTGCCTCCTCTGCTTCGGCTTCTTCTCCGTaGTCTCCTCCGCTGCTGCCATTCCCGCCATCCACC | + |
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Preference number: 6 (lower is better) Translates to: VTLASSASASSP*SPPLLPFPPST Trigger: GGTGGATGGCGGGAATGGCAGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAGAGGAGGCAAGCGTCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | GGTCAGTTCCCTGCCCCCTGTGGTTCCTTCTGCACCTaGTTCAGTGACGCTTGCCTCCTCTGCTTCGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: GQFPAPCGSFCT*FSDACLLCFGF Trigger: GAAGCCGAAGCAGAGGAGGCAAGCGTCACTGAAGCAGGTGCAGAAGGAACCACAGGGGGCAGGGAACTGACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CAA 72 bp | GTGGCGAGGTGGTCCCATAGGCTTCGGGCGGTGGGGTaGTCTGCTGAAACCCGTTCAGAAGGACAGCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: VARWSHRLRAVG*SAETRSEGQLS Trigger: AGACAGCTGTCCTTCTGAACGGGTTTCAGCAGACAACCCCACCGCCCGAAGCCTATGGGACCACCTCGCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CCA 72 bp | ACCCGTTCAGAAGGACAGCTGTCTGGGTGCCAACACTaGTCAGTTCCCTGCCCCCTGTGGTTCCTTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: TRSEGQLSGCQH*SVPCPLWFLLH Trigger: GTGCAGAAGGAACCACAGGGGGCAGGGAACTGACCAGTGTTGGCACCCAGACAGCTGTCCTTCTGAACGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CAA 72 bp | CCGCCATCCACCTCCGTGGAGTTGGTGCTGGTGCCGTaGACCGCCAGCTCGTTTTCATCCACTTCTGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: PPSTSVELVLVP*TASSFSSTSAS Trigger: AGAAGCAGAAGTGGATGAAAACGAGCTGGCGGTCAACGGCACCAGCACCAACTCCACGGAGGTGGATGGCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CAA 90 bp | CTGCCATTCCCGCCATCCACCTCCGTGGAGTTGGTGCTGGTGCCGTaGACCGCCAGCTCGTTTTCATCCACTTCTGCTTCTTCGTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LPFPPSTSVELVLVP*TASSFSSTSASSFS Trigger: TGAGAACGAAGAAGCAGAAGTGGATGAAAACGAGCTGGCGGTCAACGGCACCAGCACCAACTCCACGGAGGTGGATGGCGGGAATGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS TCA 72 bp | CGTATTCTCCCCCATACTCAACGGTGCTGCTTTTTCTaGTCGGTGGCGAGGTGGTCCCATAGGCTTCGGGCG | + |
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Preference number: 6 (lower is better) Translates to: RILPHTQRCCFF*SVARWSHRLRA Trigger: CGCCCGAAGCCTATGGGACCACCTCGCCACCGATCAGAAAAAGCAGCACCGTTGAGTATGGGGGAGAATACG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | TCCTTCTGCACCTGCTTCAGTGACGCTTGCCTCCTCTaGTTCGGCTTCTTCTCCGTTGTCTCCTCCGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: SFCTCFSDACLL*FGFFSVVSSAA Trigger: AGCAGCGGAGGAGACAACGGAGAAGAAGCCGAAGCAGAGGAGGCAAGCGTCACTGAAGCAGGTGCAGAAGGA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | CCCTGTGGTTCCTTCTGCACCTGCTTCAGTGACGCTTaGCTCCTCTGCTTCGGCTTCTTCTCCGTTGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: PCGSFCTCFSDA*LLCFGFFSVVS Trigger: GGAGACAACGGAGAAGAAGCCGAAGCAGAGGAGGCAAGCGTCACTGAAGCAGGTGCAGAAGGAACCACAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | AACACTGGTCAGTTCCCTGCCCCCTGTGGTTCCTTCTaGACCTGCTTCAGTGACGCTTGCCTCCTCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: NTGQFPAPCGSF*TCFSDACLLCF Trigger: GAAGCAGAGGAGGCAAGCGTCACTGAAGCAGGTGCAGAAGGAACCACAGGGGGCAGGGAACTGACCAGTGTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | CTCGTCGCTTTCCTTCACTTTTGGAGCCCTGCTTTCTaGATCTCCAGCCTTCTTGGGCAGTTGGAGTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: LVAFLHFWSPAF*ISSLLGQLECR Trigger: GCGGCACTCCAACTGCCCAAGAAGGCTGGAGATGCAGAAAGCAGGGCTCCAAAAGTGAAGGAAAGCGACGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CCA 72 bp | GCCCTGCTTTCTGCATCTCCAGCCTTCTTGGGCAGTTaGAGTGCCGCTAACTCAAAAGTCTGTGCTTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: ALLSASPAFLGS*SAANSKVCAWG Trigger: ACCCCAAGCACAGACTTTTGAGTTAGCGGCACTCCAACTGCCCAAGAAGGCTGGAGATGCAGAAAGCAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | TGTTACACCCGAGAGTGTGGAAAGTGTGGAGTTCTCTaGCTCCGCCTCCTGGTCTTCATTCCCCTCAGAATC | + |
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Preference number: 6 (lower is better) Translates to: CYTRECGKCGVL*LRLLVFIPLRI Trigger: GATTCTGAGGGGAATGAAGACCAGGAGGCGGAGGCAGAGAACTCCACACTTTCCACACTCTCGGGTGTAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS TCA 72 bp | CTCCTCTTCGGAACTATCGCCGTCTCCATTTTCTTCTaGAGAGTCACTGCCTCCCTGGACTGGAAACCGTTT | + |
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Preference number: 6 (lower is better) Translates to: LLFGTIAVSIFF*RVTASLDWKPF Trigger: AAACGGTTTCCAGTCCAGGGAGGCAGTGACTCTTCAGAAGAAAATGGAGACGGCGATAGTTCCGAAGAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CCA 72 bp | TTCTTCTTCTTCTTCCTCGTCGCTTTCCTTCACTTTTaGAGCCCTGCTTTCTGCATCTCCAGCCTTCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: FFFFFLVAFLHF*SPAFCISSLLG Trigger: CCCAAGAAGGCTGGAGATGCAGAAAGCAGGGCTCCAAAAGTGAAGGAAAGCGACGAGGAAGAAGAAGAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CAA 72 bp | CTTCTTCTTCTTCTTCCTCGTCGCTTTCCTTCACTTTaGGAGCCCTGCTTTCTGCATCTCCAGCCTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: LLLLLPRRFPSL*EPCFLHLQPSW Trigger: CCAAGAAGGCTGGAGATGCAGAAAGCAGGGCTCCAAAAGTGAAGGAAAGCGACGAGGAAGAAGAAGAAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS GCA 72 bp | CGTTGTCATAGACTTCATACTCATTGTTGTATTCGTTaGCTGTTTGTTCGTATTCTCCCCCATACTCAACGG | + |
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Preference number: 6 (lower is better) Translates to: RCHRLHTHCCIR*LFVRILPHTQR Trigger: CCGTTGAGTATGGGGGAGAATACGAACAAACAGGCAACGAATACAACAATGAGTATGAAGTCTATGACAACG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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| CDS CAA 90 bp | CTCGTTGTCATAGACTTCATACTCATTGTTGTATTCGTTGCCTGTTaGTTCGTATTCTCCCCCATACTCAACGGTGCTGCTTTTTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: LVVIDFILIVVFVAC*FVFSPILNGAAFSD Trigger: ATCAGAAAAAGCAGCACCGTTGAGTATGGGGGAGAATACGAACAAACAGGCAACGAATACAACAATGAGTATGAAGTCTATGACAACGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031246.9 |
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