RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IARS2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026618

Ensembl transcript IDs: ENSMUST00000027921.11, ENSMUST00000110974.4, ENSMUST00000110975.8

Found 270 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGCTTCGGTTTCCATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTaGCGGCAGCCAATCACCCGGGCTCTGCTATCAGCAGCATGTGCT +
Preference number: 1 (lower is better)
Translates to: LLRFPSGKTQAVGQL*RQPITRALLSAACA
Trigger: AGCACATGCTGCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCTGATGGAAACCGAAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR GCA 90 bp CCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTCTaGTATCAGCAGCATGTGCTATTTAGCCGAGAAGCAGGAAGCACT +
Preference number: 1 (lower is better)
Translates to: PRQWGSSDGSQSPGL*YQQHVLFSREAGST
Trigger: AGTGCTTCCTGCTTCTCGGCTAAATAGCACATGCTGCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR GCA 90 bp ATCCTTGACACAGTCCTGAGTAGGTCCACTTGCCCCAGGACCTTCTaGAGCACTCTGGAAGGCACAGGATGTGGGCAGCTTGCCAGGAAA +
Preference number: 1 (lower is better)
Translates to: ILDTVLSRSTCPRTF*STLEGTGCGQLARK
Trigger: TTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCAGAAGGTCCTGGGGCAAGTGGACCTACTCAGGACTGTGTCAAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 90 bp CCTGTAGTGCCTAGAGCAGTCCAAGTGCTGACAAGTGTGAGGAAATaGACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGT +
Preference number: 1 (lower is better)
Translates to: PVVPRAVQVLTSVRK*TALCRSASPGCSSS
Trigger: ACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTGGACTGCTCTAGGCACTACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 90 bp CACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATaGGCAGGCTGTAGAGGCAGCAGGCAACGATTTAGGATGCTTTCT +
Preference number: 1 (lower is better)
Translates to: HGGASEGRACSHQVQ*AGCRGSRQRFRMLS
Trigger: AGAAAGCATCCTAAATCGTTGCCTGCTGCCTCTACAGCCTGCGCATTGGACTTGGTGGGAACAGGCTCTTCCTTCTGAAGCTCCACCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR GCA 90 bp GAACTTTGTACTCAGAGGCCTTATCTGTCACGCATTCCGTGTTCCTaGTTCGGTTTCCATCAGGGAAAACCCAGGCAGTGGGGCAGCTCT +
Preference number: 1 (lower is better)
Translates to: ELCTQRPYLSRIPCS*FGFHQGKPRQWGSS
Trigger: AGAGCTGCCCCACTGCCTGGGTTTTCCCTGATGGAAACCGAAGCAGGAACACGGAATGCGTGACAGATAAGGCCTCTGAGTACAAAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR CCA 90 bp CTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTaGCCTCAAACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTG +
Preference number: 1 (lower is better)
Translates to: LCVPWLSWYSLCRPG*PQTPRDLPTSTSLV
Trigger: CACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTTTGAGGCCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR TCA 90 bp TCAAATCTTCAGAGAAAAATGTTTCCGATGTTGCTCGGGTGGCTCTaGGGAGCAGCCAGCTTGTGCGGGAATCCCTGCAATCACAGCTTG +
Preference number: 1 (lower is better)
Translates to: SNLQRKMFPMLLGWL*GAASLCGNPCNHSL
Trigger: CAAGCTGTGATTGCAGGGATTCCCGCACAAGCTGGCTGCTCCTCAGAGCCACCCGAGCAACATCGGAAACATTTTTCTCTGAAGATTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 90 bp CTGACTGTCAGGTTTCAAATCTTCAGAGAAAAATGTTTCCGATGTTaGTCGGGTGGCTCTGAGGAGCAGCCAGCTTGTGCGGGAATCCCT +
Preference number: 1 (lower is better)
Translates to: LTVRFQIFREKCFRC*SGGSEEQPACAGIP
Trigger: AGGGATTCCCGCACAAGCTGGCTGCTCCTCAGAGCCACCCGAGCAACATCGGAAACATTTTTCTCTGAAGATTTGAAACCTGACAGTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 90 bp TCTTCCAAGTGTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTaGCTGTCCGGGAACAGGATGGGGCACTTTGTGCTGTCACAGCCT +
Preference number: 1 (lower is better)
Translates to: SSKCSKLSVSGTWSC*LSGNRMGHFVLSQP
Trigger: AGGCTGTGACAGCACAAAGTGCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACACTTGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 90 bp AAGTCCAATGCGCAGGCTGTAGAGGCAGCAGGCAACGATTTAGGATaGTTTCTTTACTTACTGAACATAAAGTCCACAGGTTTCCAGAGG +
Preference number: 1 (lower is better)
Translates to: KSNAQAVEAAGNDLG*FLYLLNIKSTGFQR
Trigger: CCTCTGGAAACCTGTGGACTTTATGTTCAGTAAGTAAAGAAAGCATCCTAAATCGTTGCCTGCTGCCTCTACAGCCTGCGCATTGGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR CCA 90 bp ATTTTGTTTTTCAAGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTaGTACTCTCTTTGTAGACCAGGCTGGCCTCAAACTCCCAGAGAT +
Preference number: 1 (lower is better)
Translates to: ILFFKTGFLCVPWLS*YSLCRPGWPQTPRD
Trigger: ATCTCTGGGAGTTTGAGGCCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCTTGAAAAACAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR GCA 90 bp TGCAGAATCCCACGCTTCGTCATCCACAGCTTCTTCACCATCATATaGTGGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCATAGAG +
Preference number: 1 (lower is better)
Translates to: CRIPRFVIHSFFTII*WEFPRMPLFSDIIE
Trigger: CTCTATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGAAGCTGTGGATGACGAAGCGTGGGATTCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 90 bp AATAACAATTTGGTGATGCTCTTTGTAGTACACTCAGAGTCCTGCTaGTTTAGAAACTTGGTGTTTGCTAGTGGGCAGAAGGAACTGACC +
Preference number: 1 (lower is better)
Translates to: NNNLVMLFVVHSESC*FRNLVFASGQKELT
Trigger: GGTCAGTTCCTTCTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTACTACAAAGAGCATCACCAAATTGTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CCA 90 bp AGAATCCCACGCTTCGTCATCCACAGCTTCTTCACCATCATATGCTaGGAGTTTCCCAGAATGCCTTTATTTTCAGATATCATAGAGCTT +
Preference number: 1 (lower is better)
Translates to: RIPRFVIHSFFTIIC*EFPRMPLFSDIIEL
Trigger: AAGCTCTATGATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGAAGCTGTGGATGACGAAGCGTGGGATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 90 bp TTGAATAACAATTTGGTGATGCTCTTTGTAGTACACTCAGAGTCCTaGTGCTTTAGAAACTTGGTGTTTGCTAGTGGGCAGAAGGAACTG +
Preference number: 1 (lower is better)
Translates to: LNNNLVMLFVVHSES*CFRNLVFASGQKEL
Trigger: CAGTTCCTTCTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTACTACAAAGAGCATCACCAAATTGTTATTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CCA 90 bp ACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTaGCTGACATGTACATTTCTTAGTGTTACTGTTTTGAACAAATTA +
Preference number: 1 (lower is better)
Translates to: TSTSLVLRLKACTTV*LTCTFLSVTVLNKL
Trigger: TAATTTGTTCAAAACAGTAACACTAAGAAATGTACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR-3UTR GCA 90 bp AGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTCTTCCCACCAAGTCCAATaGGCAGGCTGTAGAGGCAGC +
Preference number: 2 (lower is better)
Translates to: RENPGSGAALTAANHPGSSHQVQ*AGCRGS
Trigger: GCTGCCTCTACAGCCTGCGCATTGGACTTGGTGGGA...AGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR-3UTR TCA 90 bp CAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCAACTAGCTTCTACTTCTCTGAAGAAGTCATaGGTGTGTGTGTGTGTGTGC +
Preference number: 2 (lower is better)
Translates to: QSTPFHLTGWSAGQLASTSLKKS*VCVCVC
Trigger: GCACACACACACACACACTCATGACTTCTTCAGAGA...AGTAGAAGCTAGTTGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR TCA 90 bp AGGAAGCACTCAGGACTTCCAGGTAAGGAGCCGCTGCTGTCCTCTTGGTCCTCTGATCTCTGCTGGAAGTaGCCGTGGAAAGAACGAGGT +
Preference number: 2 (lower is better)
Translates to: RKHSGLPGKEPLLSSWSSDLCWK*PWKERG
Trigger: ACCTCGTTCTTTCCACGGTCACTTCCAGCAGAGATC...AGAGGACCAAGAGGACAGCAGCGGCTCCTTACCTGGAAGTCCTGAGTGCTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR CAA 90 bp GCATACCTACCTCAGCTAGGTGGAGAAGATGAGCCTCGGCTAGTGTaGGACCCTGTAGTGCCTAGAGCAGTCCAAGTGCTGACAAGTGTG +
Preference number: 2 (lower is better)
Translates to: AYLPQLGGEDEPRLV*DPVVPRAVQVLTSV
Trigger: CACACTTGTCAGCACTTGGACTGCTCTAGGCACTACAGGGTCCAACACTAGCCGAGGCTCATCTTCTCCACCTAGCTGAGGTAGGTATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR TCA 90 bp GGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATGACTCCACAACAAAGTaGCAGACACCCAGGCGCACA +
Preference number: 2 (lower is better)
Translates to: GNALRSADQQALAAVQVYDSTTK*QTPRRT
Trigger: TGTGCGCCTGGGTGTCTGTCACTTTGTTGTGGAGTC...ATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR GCA 90 bp ATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGCAGTACACAGCACCAGGCGTAGAGGCACACAACTaGCACTCCCTGCAGAATCCC +
Preference number: 2 (lower is better)
Translates to: MYKWRGREKCSQQYTAPGVEAHN*HSLQNP
Trigger: GGGATTCTGCAGGGAGTGGCAGTTGTGTGCCTCTAC...GCCTGGTGCTGTGTACTGCTGACTACATTTCTCCCGGCCCCTCCATTTGTACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR GCA 90 bp TCCATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCAACGATTTAGGATaGTTTCTTTACTTACTGAAC +
Preference number: 2 (lower is better)
Translates to: SIRENPGSGAALTAANHPGNDLG*FLYLLN
Trigger: GTTCAGTAAGTAAAGAAAGCATCCTAAATCGTTGCC...CGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCTGATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR CAA 90 bp TTCTTCCAAGTGTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTaGCCTGTCCGGGAACAGGATGGGGCACTTTGTGCTGTCACAGCC +
Preference number: 2 (lower is better)
Translates to: FFQVFKTVCFWDLVM*PVREQDGALCAVTA
Trigger: GGCTGTGACAGCACAAAGTGCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACACTTGGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR TCA 90 bp GAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATCTTCAGTGTCTGTCTCTaGAGAAGTCATGAGTGTGTG +
Preference number: 2 (lower is better)
Translates to: EMHCALQISKPWLQFKCIFSVCL*RSHECV
Trigger: CACACACTCATGACTTCTTCAGAGACAGACACTGAA...GATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR GCA 90 bp ATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGCAGTACACAGCACCAGGCCTGCTACCATCTATCTaGCCCTCTACTTTCTGTGTA +
Preference number: 2 (lower is better)
Translates to: MYKWRGREKCSQQYTAPGLLPSI*PSTFCV
Trigger: TACACAGAAAGTAGAGGGGCAGATAGATGGTAGCAG...GCCTGGTGCTGTGTACTGCTGACTACATTTCTCCCGGCCCCTCCATTTGTACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR GCA 90 bp TCTAACACACGGTGGTGTCCTGCAACAAGGGCGTGGCATGTGCTGGAAACCTTAGTACACTCAGAGTCCTaGTGCTTTAGAAACTTGGTG +
Preference number: 2 (lower is better)
Translates to: SNTRWCPATRAWHVLETLVHSES*CFRNLV
Trigger: CACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTAC...TAAGGTTTCCAGCACATGCCACGCCCTTGTTGCAGGACACCACCGTGTGTTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR CCA 90 bp AGCAGTCCAAGTGCTGACAAGTGTGAGGAAATGCACTGCGCTCTGCAGATCAGCGCTGCTTTAGAAACTTaGTGTTTGCTAGTGGGCAGA +
Preference number: 2 (lower is better)
Translates to: SSPSADKCEEMHCALQISAALET*CLLVGR
Trigger: TCTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGC...GCTGATCTGCAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTGGACTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR CCA 90 bp AGCAGTCCAAGTGCTGACAAGTGTGAGGAAATGCACTGCGCTCTGCAGATCAGCTATTGCTGTCTGCCATaGTCATGGTTGCTCACAGTA +
Preference number: 2 (lower is better)
Translates to: SSPSADKCEEMHCALQISYCCLP*SWLLTV
Trigger: TACTGTGAGCAACCATGACCATGGCAGACAGCAATA...GCTGATCTGCAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTGGACTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR GCA 90 bp AGCAGTCCAAGTGCTGACAAGTGTGAGGAAATGCACTGCGCTCTGCAGATCAGCAACAATATCTTACAGTaGACACACAGCAGCAGCAGA +
Preference number: 2 (lower is better)
Translates to: SSPSADKCEEMHCALQISNNILQ*THSSSR
Trigger: TCTGCTGCTGCTGTGTGTGCACTGTAAGATATTGTT...GCTGATCTGCAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTGGACTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CAA 90 bp GCTGCAGTTCAAGTGTATCTGGAATGTAGCCATATAGTGCAATTATaGCTGTCTGCCATGGTCATGGTTGCTCACAGTACGTGTACCATA +
Preference number: 2 (lower is better)
Translates to: AAVQVYLECSHIVQL*LSAMVMVAHSTCTI
Trigger: TATGGTACACGTACTGTGAGCAACCATGACCATGGCAGACAGCAATAATTGCACTATATGGCTACATTCCAGATACACTTGAACTGCAGC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CAA 90 bp TTCATACCCGTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTaGGTGATGCTCTTTGTAGTACACTCAGAGTCCTGCTGCTTTAGA +
Preference number: 2 (lower is better)
Translates to: FIPVGTQRFLLLNNN*VMLFVVHSESCCFR
Trigger: TCTAAAGCAGCAGGACTCTGAGTGTACTACAAAGAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTACGGGTATGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR CCA 90 bp GCTTACACCGATTATAGCATTCACTTAGAAGTTGCTATAATCCACTTCATTAGGTTCACCATCATATGCTaGGAGTTTCCCAGAATGCCT +
Preference number: 2 (lower is better)
Translates to: AYTDYSIHLEVAIIHFIRFTIIC*EFPRMP
Trigger: AGGCATTCTGGGAAACTCCCAGCATATGATGGTGAA...CCTAATGAAGTGGATTATAGCAACTTCTAAGTGAATGCTATAATCGGTGTAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR CAA 90 bp CATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGGCCGCTGCTGTCCTCTaGGTCCTCTGTTCTCTCTTT +
Preference number: 3 (lower is better)
Translates to: HQGKPRQWGSSDGSQSPGAAAVL*VLCSLF
Trigger: AAAGAGAGAACAGAGGACCAAGAGGACAGCAGCGGC...CCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCTGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR TCA 72 bp TTTCCATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTaGCGGCAGCCAATCACCCGGGCTCTGCTATCAGCA +
Preference number: 3 (lower is better)
Translates to: FPSGKTQAVGQL*RQPITRALLSA
Trigger: TGCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCTGATGGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR CCA 72 bp CAGGACCTTCTGCAGCACTCTGGAAGGCACAGGATGTaGGCAGCTTGCCAGGAAAGCCTCCTGCTGCAAGCA +
Preference number: 3 (lower is better)
Translates to: QDLLQHSGRHRM*AACQESLLLQA
Trigger: TGCTTGCAGCAGGAGGCTTTCCTGGCAAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCAGAAGGTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 72 bp ACAGTCCTGAGTAGGTCCACTTGCCCCAGGACCTTCTaGAGCACTCTGGAAGGCACAGGATGTGGGCAGCTT +
Preference number: 3 (lower is better)
Translates to: TVLSRSTCPRTF*STLEGTGCGQL
Trigger: AAGCTGCCCACATCCTGTGCCTTCCAGAGTGCTGCAGAAGGTCCTGGGGCAAGTGGACCTACTCAGGACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 72 bp TGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTCTaGTATCAGCAGCATGTGCTATTTAGCCGAGAAGCA +
Preference number: 3 (lower is better)
Translates to: WGSSDGSQSPGL*YQQHVLFSREA
Trigger: TGCTTCTCGGCTAAATAGCACATGCTGCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR GCA 72 bp CCTAGAGCAGTCCAAGTGCTGACAAGTGTGAGGAAATaGACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGC +
Preference number: 3 (lower is better)
Translates to: PRAVQVLTSVRK*TALCRSASPGC
Trigger: GCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTGGACTGCTCTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR-3UTR CAA 90 bp CAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCAACTAGCTTCTACTTGCTGCTTTAGAAACTaGGTGTTTGCTAGTGGGCAG +
Preference number: 3 (lower is better)
Translates to: QSTPFHLTGWSAGQLASTCCFRN*VFASGQ
Trigger: CTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCA...AGTAGAAGCTAGTTGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 72 bp AGCAGTCCAAGTGCTGACAAGTGTGAGGAAATGCACTaGGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTC +
Preference number: 3 (lower is better)
Translates to: SSPSADKCEEMH*ALQISKPWLQF
Trigger: GAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTGGACTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 72 bp GCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATaGGCAGGCTGTAGAGGCAGCAGGCAACGATTTAGG +
Preference number: 3 (lower is better)
Translates to: ASEGRACSHQVQ*AGCRGSRQRFR
Trigger: CCTAAATCGTTGCCTGCTGCCTCTACAGCCTGCGCATTGGACTTGGTGGGAACAGGCTCTTCCTTCTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR GCA 72 bp GCAGCCAATCACCCGGGCTCTGCTATCAGCAGCATGTaGTATTTAGCCGAGAAGCAGGAAGCACTCAGGACT +
Preference number: 3 (lower is better)
Translates to: AANHPGSAISSM*YLAEKQEALRT
Trigger: AGTCCTGAGTGCTTCCTGCTTCTCGGCTAAATAGCACATGCTGCTGATAGCAGAGCCCGGGTGATTGGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR GCA 72 bp ACTCAGAGGCCTTATCTGTCACGCATTCCGTGTTCCTaGTTCGGTTTCCATCAGGGAAAACCCAGGCAGTGG +
Preference number: 3 (lower is better)
Translates to: TQRPYLSRIPCS*FGFHQGKPRQW
Trigger: CCACTGCCTGGGTTTTCCCTGATGGAAACCGAAGCAGGAACACGGAATGCGTGACAGATAAGGCCTCTGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR CCA 72 bp CCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTaGCCTCAAACTCCCAGAGATCTGCCTACTTCTACC +
Preference number: 3 (lower is better)
Translates to: PWLSWYSLCRPG*PQTPRDLPTST
Trigger: GGTAGAAGTAGGCAGATCTCTGGGAGTTTGAGGCCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR GCA 72 bp TGTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTaGCTGTCCGGGAACAGGATGGGGCACTTTGTGCTG +
Preference number: 3 (lower is better)
Translates to: CSKLSVSGTWSC*LSGNRMGHFVL
Trigger: CAGCACAAAGTGCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CCA 72 bp TCTTCCAAGTGTTCAAAACTGTCTGTTTCTGGGACTTaGTCATGTTGCCTGTCCGGGAACAGGATGGGGCAC +
Preference number: 3 (lower is better)
Translates to: SSKCSKLSVSGT*SCCLSGNRMGH
Trigger: GTGCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACACTTGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 72 bp AGGTTTCAAATCTTCAGAGAAAAATGTTTCCGATGTTaGTCGGGTGGCTCTGAGGAGCAGCCAGCTTGTGCG +
Preference number: 3 (lower is better)
Translates to: RFQIFREKCFRC*SGGSEEQPACA
Trigger: CGCACAAGCTGGCTGCTCCTCAGAGCCACCCGAGCAACATCGGAAACATTTTTCTCTGAAGATTTGAAACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CCA 72 bp TTCAAGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTaGTACTCTCTTTGTAGACCAGGCTGGCCTCAAACT +
Preference number: 3 (lower is better)
Translates to: FKTGFLCVPWLS*YSLCRPGWPQT
Trigger: AGTTTGAGGCCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCTTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR GCA 72 bp GCGCAGGCTGTAGAGGCAGCAGGCAACGATTTAGGATaGTTTCTTTACTTACTGAACATAAAGTCCACAGGT +
Preference number: 3 (lower is better)
Translates to: AQAVEAAGNDLG*FLYLLNIKSTG
Trigger: ACCTGTGGACTTTATGTTCAGTAAGTAAAGAAAGCATCCTAAATCGTTGCCTGCTGCCTCTACAGCCTGCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
3UTR GCA 72 bp CCACGCTTCGTCATCCACAGCTTCTTCACCATCATATaGTGGGAGTTTCCCAGAATGCCTTTATTTTCAGAT +
Preference number: 3 (lower is better)
Translates to: PRFVIHSFFTII*WEFPRMPLFSD
Trigger: ATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGAAGCTGTGGATGACGAAGCGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 72 bp TTGGTGATGCTCTTTGTAGTACACTCAGAGTCCTGCTaGTTTAGAAACTTGGTGTTTGCTAGTGGGCAGAAG +
Preference number: 3 (lower is better)
Translates to: LVMLFVVHSESC*FRNLVFASGQK
Trigger: CTTCTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTACTACAAAGAGCATCACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 72 bp CCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTaGACTACTGTCTGGCTGACATGTACATTTCTTAGT +
Preference number: 3 (lower is better)
Translates to: PTSTSLVLRLKA*TTVWLTCTFLS
Trigger: ACTAAGAAATGTACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR CCA 72 bp ATTTTGTTTTTCAAGACAGGGTTTCTTTGTGTGCCATaGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTGG +
Preference number: 3 (lower is better)
Translates to: ILFFKTGFLCVP*LSWYSLCRPGW
Trigger: CCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCTTGAAAAACAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR TCA 72 bp TCTAATCAAGGGAAGAAGCCAACTCCATTAGAAGGCTaGGAATACTCTTCAGGGACTCCACAACAAAGTGAC +
Preference number: 3 (lower is better)
Translates to: SNQGKKPTPLEG*EYSSGTPQQSD
Trigger: GTCACTTTGTTGTGGAGTCCCTGAAGAGTATTCTCAGCCTTCTAATGGAGTTGGCTTCTTCCCTTGATTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR GCA 72 bp AATTTGGTGATGCTCTTTGTAGTACACTCAGAGTCCTaGTGCTTTAGAAACTTGGTGTTTGCTAGTGGGCAG +
Preference number: 3 (lower is better)
Translates to: NLVMLFVVHSES*CFRNLVFASGQ
Trigger: CTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTACTACAAAGAGCATCACCAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CCA 72 bp CGCTTCGTCATCCACAGCTTCTTCACCATCATATGCTaGGAGTTTCCCAGAATGCCTTTATTTTCAGATATC +
Preference number: 3 (lower is better)
Translates to: RFVIHSFFTIIC*EFPRMPLFSDI
Trigger: GATATCTGAAAATAAAGGCATTCTGGGAAACTCCCAGCATATGATGGTGAAGAAGCTGTGGATGACGAAGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CCA 72 bp TCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTaGCTGACATGTACATTTCTTAGTGTTACTGTTTTG +
Preference number: 3 (lower is better)
Translates to: SLVLRLKACTTV*LTCTFLSVTVL
Trigger: CAAAACAGTAACACTAAGAAATGTACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR TCA 72 bp AGTAACCATATTCAGTGTCTGTCTCTGAAGAAGTCATaGGTGTGTGTGTGTGTGTGCCCTGTATATATGTAT +
Preference number: 3 (lower is better)
Translates to: SNHIQCLSLKKS*VCVCVCPVYMY
Trigger: ATACATATATACAGGGCACACACACACACACACTCATGACTTCTTCAGAGACAGACACTGAATATGGTTACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp CCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTCTGCTATCAGCCCAGCATGTCCGTCATaGTGTTCAGTGCGGCTCCGG +
Preference number: 4 (lower is better)
Translates to: PGSGAALTAANHPGSAISPACPS*CSVRLR
Trigger: CCGGAGCCGCACTGAACAGCATGACGGACATGCTGG...GCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CCA 90 bp CATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGGCTTCATCGGGAAGCTaGTCTGCGGCAGCAGCACCG +
Preference number: 4 (lower is better)
Translates to: HQGKPRQWGSSDGSQSPGASSGS*SAAAAP
Trigger: CGGTGCTGCTGCCGCAGACCAGCTTCCCGATGAAGC...CCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCTGATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR TCA 90 bp GGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTCTGCAGTACAGCCTTGTTCTaGAGTTCAGGGCCTGCGGCA +
Preference number: 4 (lower is better)
Translates to: GKPRQWGSSDGSQSPGLCSTALF*SSGPAA
Trigger: TGCCGCAGGCCCTGAACTTCAGAACAAGGCTGTACT...GCAGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp TCCATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGATCGGGAAGCTGGTCTaGGGCAGCAGCACCGTGTCA +
Preference number: 4 (lower is better)
Translates to: SIRENPGSGAALTAANHPIGKLV*GSSTVS
Trigger: TGACACGGTGCTGCTGCCGCAGACCAGCTTCCCGAT...CGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCTGATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp CACACAGCAGCAGCAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCAGCAGTTATTCCAGTCTaGCATCACTCCCCAGCGGAC +
Preference number: 4 (lower is better)
Translates to: HTAAAEHALPPHGVECWAAVIPV*HHSPAD
Trigger: GTCCGCTGGGGAGTGATGGCAGACTGGAATAACTGC...TGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTGCTGCTGCTGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp CACACAGCAGCAGCAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCAAAGGGTGACTACAAGTaGCACCTTCCAGATCCACAC +
Preference number: 4 (lower is better)
Translates to: HTAAAEHALPPHGVECWAKGDYK*HLPDPH
Trigger: GTGTGGATCTGGAAGGTGGCACTTGTAGTCACCCTT...TGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTGCTGCTGCTGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp CACACAGCAGCAGCAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCACAACGACTCCTTAGCTaGAGCCTTGATGTCCGTGAT +
Preference number: 4 (lower is better)
Translates to: HTAAAEHALPPHGVECWAQRLLS*SLDVRD
Trigger: ATCACGGACATCAAGGCTGCAGCTAAGGAGTCGTTG...TGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTGCTGCTGCTGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp ATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGCAGTACACAGCACCAGGCTCTGCCGGGAGAAGCTaGTCAGCAGGGAGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: MYKWRGREKCSQQYTAPGSAGRS*SAGRVH
Trigger: GTGGACCCTCCCTGCTGAGCAGCTTCTCCCGGCAGA...GCCTGGTGCTGTGTACTGCTGACTACATTTCTCCCGGCCCCTCCATTTGTACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp CCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTCTGCTATCAGCACACTTTTGTTTCAATaGGCAAGCCATGGCAATCCC +
Preference number: 4 (lower is better)
Translates to: PGSGAALTAANHPGSAISTLLFQ*ASHGNP
Trigger: GGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGT...GCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR TCA 90 bp CAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCAACTAGCTTCTACTATCTGGCTTTCTCCCTaGTCTCCATGGCTGAAAGAC +
Preference number: 4 (lower is better)
Translates to: QSTPFHLTGWSAGQLASTIWLSP*SPWLKD
Trigger: GTCTTTCAGCCATGGAGATCAGGGAGAAAGCCAGAT...AGTAGAAGCTAGTTGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GGTCCTCTGTTCTCTCTTTATAAGCAAAAGGCACAGGACAGGATCTCTGCTGGATGCCGCCTTTCGAGCTaGTCTGGGGGCTGTCCGCCC +
Preference number: 4 (lower is better)
Translates to: GPLFSLYKQKAQDRISAGCRLSS*SGGCPP
Trigger: GGGCGGACAGCCCCCAGAGCAGCTCGAAAGGCGGCA...TCCAGCAGAGATCCTGTCCTGTGCCTTTTGCTTATAAAGAGAGAACAGAGGACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp GGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATCCAGCATGTCCGTCATaGTGTTCAGTGCGGCTCCGG +
Preference number: 4 (lower is better)
Translates to: GNALRSADQQALAAVQVYPACPS*CSVRLR
Trigger: CCGGAGCCGCACTGAACAGCATGACGGACATGCTGG...ATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTGGCCCAGCATGTCCGTCATaGTGTTCAGTGCGGCTCCGG +
Preference number: 4 (lower is better)
Translates to: GFFVCHGCPGTLFVDQAGPACPS*CSVRLR
Trigger: CCGGAGCCGCACTGAACAGCATGACGGACATGCTGG...GCCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp GCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGCTTCATCGGGAAGCTaGTCTGCGGCAGCAGCACCG +
Preference number: 4 (lower is better)
Translates to: AYFYLPSAEIKGVHYCLAASSGS*SAAAAP
Trigger: CGGTGCTGCTGCCGCAGACCAGCTTCCCGATGAAGC...AGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR CAA 72 bp CCTCAGCTAGGTGGAGAAGATGAGCCTCGGCTAGTGTaGGACCCTGTAGTGCCTAGAGCAGTCCAAGTGCTG +
Preference number: 4 (lower is better)
Translates to: PQLGGEDEPRLV*DPVVPRAVQVL
Trigger: CAGCACTTGGACTGCTCTAGGCACTACAGGGTCCAACACTAGCCGAGGCTCATCTTCTCCACCTAGCTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATGCGCAGGCTGTAGCAGTTATTCCAGTCTaGCATCACTCCCCAGCGGAC +
Preference number: 4 (lower is better)
Translates to: VELQKEEPVPTKSNAQAVAVIPV*HHSPAD
Trigger: GTCCGCTGGGGAGTGATGGCAGACTGGAATAACTGC...TACAGCCTGCGCATTGGACTTGGTGGGAACAGGCTCTTCCTTCTGAAGCTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp AGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTCTCACCACAGCATACTTTaGCTCTGGCATATAGCAAAT +
Preference number: 4 (lower is better)
Translates to: RENPGSGAALTAANHPGSHHSIL*LWHIAN
Trigger: ATTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTG...AGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp TCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGACATGTTCTGCCGGGAGAAGCTaGTCAGCAGGGAGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: STSLVLRLKACTTVWLTCSAGRS*SAGRVH
Trigger: GTGGACCCTCCCTGCTGAGCAGCTTCTCCCGGCAGA...ACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp GAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATGCGCATCAATGGGCAAGCCATaGCAATCCCAGCCAGGCACA +
Preference number: 4 (lower is better)
Translates to: EHGGASEGRACSHQVQCASMGKP*QSQPGT
Trigger: TGTGCCTGGCTGGGATTGCCATGGCTTGCCCATTGA...TGCGCATTGGACTTGGTGGGAACAGGCTCTTCCTTCTGAAGCTCCACCGTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CCA 90 bp CTTGTAGAGGCACACAACTGCCACTCCCTGCAGAATCCCACGCTTCGTCATCCATTCCATACCGTGAGCTaGGGCTGTGTGAACCAACCC +
Preference number: 4 (lower is better)
Translates to: LVEAHNCHSLQNPTLRHPFHTVS*GCVNQP
Trigger: GGGTTGGTTCACACAGCCCCAGCTCACGGTATGGAA...TGGATGACGAAGCGTGGGATTCTGCAGGGAGTGGCAGTTGTGTGCCTCTACAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GCTCTGACGGCAGCCAATCACCCGGGCTCTGCTATCAGCAGCATGTGCTATTTATTCCATACCGTGAGCTaGGGCTGTGTGAACCAACCC +
Preference number: 4 (lower is better)
Translates to: ALTAANHPGSAISSMCYLFHTVS*GCVNQP
Trigger: GGGTTGGTTCACACAGCCCCAGCTCACGGTATGGAA...TAAATAGCACATGCTGCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CCA 90 bp CAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCAACTAGCTTCTACTGGAGGTTCTTTGCTGTaGTCTTTTCCTCCACTGATG +
Preference number: 4 (lower is better)
Translates to: QSTPFHLTGWSAGQLASTGGSLL*SFPPLM
Trigger: CATCAGTGGAGGAAAAGACCACAGCAAAGAACCTCC...AGTAGAAGCTAGTTGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp CAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATGCGCAGGCTGTAGAGGCAGCAATCTGGCTTTCTCCCTaGTCTCCATGGCTGAAAGAC +
Preference number: 4 (lower is better)
Translates to: QKEEPVPTKSNAQAVEAAIWLSP*SPWLKD
Trigger: GTCTTTCAGCCATGGAGATCAGGGAGAAAGCCAGAT...TGCTGCCTCTACAGCCTGCGCATTGGACTTGGTGGGAACAGGCTCTTCCTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp GGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTGGCTGAAGTTCAGGGCCTaGGGCATCGGTGAACATTCC +
Preference number: 4 (lower is better)
Translates to: GFLCVPWLSWYSLCRPGWLKFRA*GIGEHS
Trigger: GGAATGTTCACCGATGCCGCAGGCCCTGAACTTCAG...CCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp GTAGTACACTCAGAGTCCTGCTGCTTTAGAAACTTGGTGTTTGCTAGTGGGCAGGCTTCATCGGGAAGCTaGTCTGCGGCAGCAGCACCG +
Preference number: 4 (lower is better)
Translates to: VVHSESCCFRNLVFASGQASSGS*SAAAAP
Trigger: CGGTGCTGCTGCCGCAGACCAGCTTCCCGATGAAGC...CTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTACTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp TTCCGTGTTCCTGCTTCGGTTTCCATCAGGGAAAACCCAGGCAGTGGGGCAGCTAAGCCACATTTCTGCTaGATCTCCAGCTCCATGTCG +
Preference number: 4 (lower is better)
Translates to: FRVPASVSIRENPGSGAAKPHFC*ISSSMS
Trigger: CGACATGGAGCTGGAGATCCAGCAGAAATGTGGCTT...AGCTGCCCCACTGCCTGGGTTTTCCCTGATGGAAACCGAAGCAGGAACACGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CCA 90 bp GGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTGGCGTTAGTAAGGAAGACTaGAACCAGCCCCCGAGCTGG +
Preference number: 4 (lower is better)
Translates to: GFFVCHGCPGTLFVDQAGVSKED*NQPPSW
Trigger: CCAGCTCGGGGGCTGGTTCCAGTCTTCCTTACTAAC...GCCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp ATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGCAGTACACAGCACCAGGCGGCTGCCTGAGCAAATaGTCTGGCTTTCTCCCTGAT +
Preference number: 4 (lower is better)
Translates to: MYKWRGREKCSQQYTAPGGCLSK*SGFLPD
Trigger: ATCAGGGAGAAAGCCAGATCATTTGCTCAGGCAGCC...GCCTGGTGCTGTGTACTGCTGACTACATTTCTCCCGGCCCCTCCATTTGTACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp GAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATCCCTGAAAGGTGCTTTTaGCCTGGTGGCCACACTTGT +
Preference number: 4 (lower is better)
Translates to: EMHCALQISKPWLQFKCIPERCF*PGGHTC
Trigger: ACAAGTGTGGCCACCAGGTCAAAAGCACCTTTCAGG...GATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GCGTGCACTACTGTCTGGCTGACATGTACATTTCTTAGTGTTACTGTTTTGAACTGCCGCCTTTCGAGCTaGTCTGGGGGCTGTCCGCCC +
Preference number: 4 (lower is better)
Translates to: ACTTVWLTCTFLSVTVLNCRLSS*SGGCPP
Trigger: GGGCGGACAGCCCCCAGAGCAGCTCGAAAGGCGGCA...GTTCAAAACAGTAACACTAAGAAATGTACATGTCAGCCAGACAGTAGTGCACGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp TCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACGCAGTTATTCCAGTCTaGCATCACTCCCCAGCGGAC +
Preference number: 4 (lower is better)
Translates to: SQRSAYFYLPSAEIKGVHAVIPV*HHSPAD
Trigger: GTCCGCTGGGGAGTGATGGCAGACTGGAATAACTGC...GTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp ACTCAGAGGCCTTATCTGTCACGCATTCCGTGTTCCTGCTTCGGTTTCCATCAGCTGAAGTTCAGGGCCTaGGGCATCGGTGAACATTCC +
Preference number: 4 (lower is better)
Translates to: TQRPYLSRIPCSCFGFHQLKFRA*GIGEHS
Trigger: GGAATGTTCACCGATGCCGCAGGCCCTGAACTTCAG...CTGATGGAAACCGAAGCAGGAACACGGAATGCGTGACAGATAAGGCCTCTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp CTTGTAGAGGCACACAACTGCCACTCCCTGCAGAATCCCACGCTTCGTCATCCATTTTGCCAGGGATGCTaGCAAGAAAGGAGTCCCTCA +
Preference number: 4 (lower is better)
Translates to: LVEAHNCHSLQNPTLRHPFCQGC*QERSPS
Trigger: TGAGGGACTCCTTTCTTGGCAGCATCCCTGGCAAAA...TGGATGACGAAGCGTGGGATTCTGCAGGGAGTGGCAGTTGTGTGCCTCTACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp TCTAACACACGGTGGTGTCCTGCAACAAGGGCGTGGCATGTGCTGGAAACCTTAGAGCTCAATGTCACCTaGAGTTCTTTCCCGTGGCTC +
Preference number: 4 (lower is better)
Translates to: SNTRWCPATRAWHVLETLELNVT*SSFPWL
Trigger: GAGCCACGGGAAAGAACTGCAGGTGACATTGAGCTC...TAAGGTTTCCAGCACATGCCACGCCCTTGTTGCAGGACACCACCGTGTGTTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp TCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACCAAACCACTGCTTGCTaGCTCGAATCAGCACGGGTG +
Preference number: 4 (lower is better)
Translates to: SQRSAYFYLPSAEIKGVHQTTAC*LESARV
Trigger: CACCCGTGCTGATTCGAGCCAGCAAGCAGTGGTTTG...GTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp TCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACGGCTGCCTGAGCAAATaGTCTGGCTTTCTCCCTGAT +
Preference number: 4 (lower is better)
Translates to: SQRSAYFYLPSAEIKGVHGCLSK*SGFLPD
Trigger: ATCAGGGAGAAAGCCAGATCATTTGCTCAGGCAGCC...GTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp GGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATGAACCATCACTGTCCTaGAAGGTGCTTTTGACCTGG +
Preference number: 4 (lower is better)
Translates to: GNALRSADQQALAAVQVYEPSLS*KVLLTW
Trigger: CCAGGTCAAAAGCACCTTTCAGGACAGTGATGGTTC...ATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp ATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGCAGTACACAGCACCAGGCTTACAAACCACTGCTTaGTGGCTCGAATCAGCACGG +
Preference number: 4 (lower is better)
Translates to: MYKWRGREKCSQQYTAPGLQTTA*WLESAR
Trigger: CCGTGCTGATTCGAGCCAGCAAGCAGTGGTTTGTAA...GCCTGGTGCTGTGTACTGCTGACTACATTTCTCCCGGCCCCTCCATTTGTACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp ATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGCAGTACACAGCACCAGGCAAGCCACATTTCTGCTaGATCTCCAGCTCCATGTCG +
Preference number: 4 (lower is better)
Translates to: MYKWRGREKCSQQYTAPGKPHFC*ISSSMS
Trigger: CGACATGGAGCTGGAGATCCAGCAGAAATGTGGCTT...GCCTGGTGCTGTGTACTGCTGACTACATTTCTCCCGGCCCCTCCATTTGTACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp TCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGACATGTTCAATGGGCAAGCCATaGCAATCCCAGCCAGGCACA +
Preference number: 4 (lower is better)
Translates to: STSLVLRLKACTTVWLTCSMGKP*QSQPGT
Trigger: TGTGCCTGGCTGGGATTGCCATGGCTTGCCCATTGA...ACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp AGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGTTCCATACCGTGAGCTaGGGCTGTGTGAACCAACCC +
Preference number: 4 (lower is better)
Translates to: RQGFFVCHGCPGTLFVDQFHTVS*GCVNQP
Trigger: GGGTTGGTTCACACAGCCCCAGCTCACGGTATGGAA...CTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp AGCAGTCCAAGTGCTGACAAGTGTGAGGAAATGCACTGCGCTCTGCAGATCAGCTGCCTCCTCCAGTCCTaGCTTCTTCCAAATAGAGCT +
Preference number: 4 (lower is better)
Translates to: SSPSADKCEEMHCALQISCLLQS*LLPNRA
Trigger: AGCTCTATTTGGAAGAAGCCAGGACTGGAGGAGGCA...GCTGATCTGCAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTGGACTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp GCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGAACCATCACTGTCCTaGAAGGTGCTTTTGACCTGG +
Preference number: 4 (lower is better)
Translates to: AYFYLPSAEIKGVHYCLAEPSLS*KVLLTW
Trigger: CCAGGTCAAAAGCACCTTTCAGGACAGTGATGGTTC...AGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp ATCTGCCCCTCTACTTTCTGTGTAAGCCTTGGATTTCTTTCTAGGGAACTGTCTATCGGGAAGCTGGTCTaGGGCAGCAGCACCGTGTCA +
Preference number: 4 (lower is better)
Translates to: ICPSTFCVSLGFLSRELSIGKLV*GSSTVS
Trigger: TGACACGGTGCTGCTGCCGCAGACCAGCTTCCCGAT...AGACAGTTCCCTAGAAAGAAATCCAAGGCTTACACAGAAAGTAGAGGGGCAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTTTACAAACCACTGCTTaGTGGCTCGAATCAGCACGG +
Preference number: 4 (lower is better)
Translates to: AYFYLPSAEIKGVHYCLALQTTA*WLESAR
Trigger: CCGTGCTGATTCGAGCCAGCAAGCAGTGGTTTGTAA...AGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGAGCAGTCTCAGAGGTATaGTTCCAACATCGAGGGCAC +
Preference number: 4 (lower is better)
Translates to: VQNCLFLGLGHVACPGTGAVSEV*FQHRGH
Trigger: GTGCCCTCGATGTTGGAAGCATACCTCTGAGACTGC...TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GTAGTACACTCAGAGTCCTGCTGCTTTAGAAACTTGGTGTTTGCTAGTGGGCAGCATGAGGGTCACCGTTaGCATAAGGAGGCCCGTCAT +
Preference number: 4 (lower is better)
Translates to: VVHSESCCFRNLVFASGQHEGHR*HKEARH
Trigger: ATGACGGGCCTCCTTATGCCAACGGTGACCCTCATG...CTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp TCAAACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCCATGAGGGTCACCGTTaGCATAAGGAGGCCCGTCAT +
Preference number: 4 (lower is better)
Translates to: SNSQRSAYFYLPSAEIKGHEGHR*HKEARH
Trigger: ATGACGGGCCTCCTTATGCCAACGGTGACCCTCATG...GCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp TCTGACGGCAGCCAATCACCCGGGCTCTGCTATCAGCAGCATGTGCTATTTAGCATACTCTCAGCTGCTTaGCTTCGTACTTTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: SDGSQSPGLCYQQHVLFSILSAA*LRTLGQ
Trigger: TTGACCCAAAGTACGAAGCCAAGCAGCTGAGAGTAT...GCTAAATAGCACATGCTGCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CCA 90 bp GGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTGGGGAGGTTCTTTGCTGTaGTCTTTTCCTCCACTGATG +
Preference number: 4 (lower is better)
Translates to: GFLCVPWLSWYSLCRPGWGGSLL*SFPPLM
Trigger: CATCAGTGGAGGAAAAGACCACAGCAAAGAACCTCC...CCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
3UTR CAA 72 bp GTGTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTaGCCTGTCCGGGAACAGGATGGGGCACTTTGTGCT +
Preference number: 4 (lower is better)
Translates to: VFKTVCFWDLVM*PVREQDGALCA
Trigger: AGCACAAAGTGCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp TCTAAATGTGACAAAGAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACGGCTGCCTGAGCAAATaGTCTGGCTTTCTCCCTGAT +
Preference number: 4 (lower is better)
Translates to: SKCDKEHGGASEGRACSHGCLSK*SGFLPD
Trigger: ATCAGGGAGAAAGCCAGATCATTTGCTCAGGCAGCC...GTGGGAACAGGCTCTTCCTTCTGAAGCTCCACCGTGTTCTTTGTCACATTTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR TCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTAGTACAGCCTTGTTCTaGAGTTCAGGGCCTGCGGCA +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTSTALF*SSGPAA
Trigger: TGCCGCAGGCCCTGAACTTCAGAACAAGGCTGTACT...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp TCAAGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCCTGAAAGGTGCTTTTaGCCTGGTGGCCACACTTGT +
Preference number: 4 (lower is better)
Translates to: SRQGFFVCHGCPGTLFVDPERCF*PGGHTC
Trigger: ACAAGTGTGGCCACCAGGTCAAAAGCACCTTTCAGG...GTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGACAATGGTCACCTCCGTaGAGACATTGGACTCAGCTA +
Preference number: 4 (lower is better)
Translates to: VQNCLFLGLGHVACPGTGQWSPP*RHWTQL
Trigger: TAGCTGAGTCCAATGTCTTCACGGAGGTGACCATTG...TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GCTTACACCGATTATAGCATTCACTTAGAAGTTGCTATAATCCACTTCATTAGGTGCCGCCTTTCGAGCTaGTCTGGGGGCTGTCCGCCC +
Preference number: 4 (lower is better)
Translates to: AYTDYSIHLEVAIIHFIRCRLSS*SGGCPP
Trigger: GGGCGGACAGCCCCCAGAGCAGCTCGAAAGGCGGCA...CCTAATGAAGTGGATTATAGCAACTTCTAAGTGAATGCTATAATCGGTGTAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp TCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGACATGTAAGGGTGACTACAAGTaGCACCTTCCAGATCCACAC +
Preference number: 4 (lower is better)
Translates to: STSLVLRLKACTTVWLTCKGDYK*HLPDPH
Trigger: GTGTGGATCTGGAAGGTGGCACTTGTAGTCACCCTT...ACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTCTGAAGTTCAGGGCCTaGGGCATCGGTGAACATTCC +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTLKFRA*GIGEHS
Trigger: GGAATGTTCACCGATGCCGCAGGCCCTGAACTTCAG...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTTCAATGGGCAAGCCATaGCAATCCCAGCCAGGCACA +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTSMGKP*QSQPGT
Trigger: TGTGCCTGGCTGGGATTGCCATGGCTTGCCCATTGA...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTGTTAGTAAGGAAGACTaGAACCAGCCCCCGAGCTGG +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTVSKED*NQPPSW
Trigger: CCAGCTCGGGGGCTGGTTCCAGTCTTCCTTACTAAC...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp TCTAACACACGGTGGTGTCCTGCAACAAGGGCGTGGCATGTGCTGGAAACCTTAAGCTGGACAGTTCTCTaGTGTAGAAGGCTTTCAACA +
Preference number: 4 (lower is better)
Translates to: SNTRWCPATRAWHVLETLSWTVL*CRRLST
Trigger: TGTTGAAAGCCTTCTACACCAGAGAACTGTCCAGCT...TAAGGTTTCCAGCACATGCCACGCCCTTGTTGCAGGACACCACCGTGTGTTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CAA 72 bp TTCTTCCAAGTGTTCAAAACTGTCTGTTTCTGGGACTaGGTCATGTTGCCTGTCCGGGAACAGGATGGGGCA +
Preference number: 4 (lower is better)
Translates to: FFQVFKTVCFWD*VMLPVREQDGA
Trigger: TGCCCCATCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAACACTTGGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp ACTCAGAGGCCTTATCTGTCACGCATTCCGTGTTCCTGCTTCGGTTTCCATCAGTTCCAGATCCACACCTaGAAATGCTGCAACAACATC +
Preference number: 4 (lower is better)
Translates to: TQRPYLSRIPCSCFGFHQFQIHT*KCCNNI
Trigger: GATGTTGTTGCAGCATTTTCAGGTGTGGATCTGGAA...CTGATGGAAACCGAAGCAGGAACACGGAATGCGTGACAGATAAGGCCTCTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR TCA 90 bp GCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTTTCCAGATCCACACCTaGAAATGCTGCAACAACATC +
Preference number: 4 (lower is better)
Translates to: AYFYLPSAEIKGVHYCLAFQIHT*KCCNNI
Trigger: GATGTTGTTGCAGCATTTTCAGGTGTGGATCTGGAA...AGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp TCAAACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCCAATGGTCACCTCCGTaGAGACATTGGACTCAGCTA +
Preference number: 4 (lower is better)
Translates to: SNSQRSAYFYLPSAEIKGQWSPP*RHWTQL
Trigger: TAGCTGAGTCCAATGTCTTCACGGAGGTGACCATTG...GCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp GGTCCTCTGTTCTCTCTTTATAAGCAAAAGGCACAGGACAGGATCTCTGCTGGATTACAAACCACTGCTTaGTGGCTCGAATCAGCACGG +
Preference number: 4 (lower is better)
Translates to: GPLFSLYKQKAQDRISAGLQTTA*WLESAR
Trigger: CCGTGCTGATTCGAGCCAGCAAGCAGTGGTTTGTAA...TCCAGCAGAGATCCTGTCCTGTGCCTTTTGCTTATAAAGAGAGAACAGAGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp TCTAACACACGGTGGTGTCCTGCAACAAGGGCGTGGCATGTGCTGGAAACCTTAACATCACTGCCGTGCTaGTCGACGAGTTTAATAATA +
Preference number: 4 (lower is better)
Translates to: SNTRWCPATRAWHVLETLTSLPC*STSLII
Trigger: TATTATTAAACTCGTCGAGCAGCACGGCAGTGATGT...TAAGGTTTCCAGCACATGCCACGCCCTTGTTGCAGGACACCACCGTGTGTTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp ATCTGCCCCTCTACTTTCTGTGTAAGCCTTGGATTTCTTTCTAGGGAACTGTCTCAAACCACTGCTTGCTaGCTCGAATCAGCACGGGTG +
Preference number: 4 (lower is better)
Translates to: ICPSTFCVSLGFLSRELSQTTAC*LESARV
Trigger: CACCCGTGCTGATTCGAGCCAGCAAGCAGTGGTTTG...AGACAGTTCCCTAGAAAGAAATCCAAGGCTTACACAGAAAGTAGAGGGGCAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTGGCCATTCCCGAGGGACTTaGACATCTTTTCTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: GFFVCHGCPGTLFVDQAGHSRGT*TSFLLF
Trigger: AAAAAGGAGAAAAGATGTCCAAGTCCCTCGGGAATG...GCCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTTGCAGTTCTTTCCCGTaGCTCCTGAGCCAGCAATGT +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTCSSFP*LLSQQC
Trigger: ACATTGCTGGCTCAGGAGCCACGGGAAAGAACTGCA...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp TCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGACATGTCCAGGAATAAAGCTCTaGAAAGCCACATTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: STSLVLRLKACTTVWLTCPGIKL*KATFLL
Trigger: CAGCAGAAATGTGGCTTTTCAGAGCTTTATTCCTGG...ACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp GCGTGCACTACTGTCTGGCTGACATGTACATTTCTTAGTGTTACTGTTTTGAACAGTACAGCCTTGTTCTaGAGTTCAGGGCCTGCGGCA +
Preference number: 4 (lower is better)
Translates to: ACTTVWLTCTFLSVTVLNSTALF*SSGPAA
Trigger: TGCCGCAGGCCCTGAACTTCAGAACAAGGCTGTACT...GTTCAAAACAGTAACACTAAGAAATGTACATGTCAGCCAGACAGTAGTGCACGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp ATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGCAGTACACAGCACCAGGCGCATATACTGGTCTATaGCATACATATTCTTCACGG +
Preference number: 4 (lower is better)
Translates to: MYKWRGREKCSQQYTAPGAYTGL*HTYSSR
Trigger: CCGTGAAGAATATGTATGTCATAGACCAGTATATGC...GCCTGGTGCTGTGTACTGCTGACTACATTTCTCCCGGCCCCTCCATTTGTACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp GGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATGTCATACTGTTTGTATaGGTCAGTAATCTTTGTCGC +
Preference number: 4 (lower is better)
Translates to: GNALRSADQQALAAVQVYVILFV*VSNLCR
Trigger: GCGACAAAGATTACTGACTCATACAAACAGTATGAC...ATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GTAGTACACTCAGAGTCCTGCTGCTTTAGAAACTTGGTGTTTGCTAGTGGGCAGATGTCCAAAATGTCCTaGCCTGGCGCGTATTCCAAA +
Preference number: 4 (lower is better)
Translates to: VVHSESCCFRNLVFASGQMSKMS*PGAYSK
Trigger: TTTGGAATACGCGCCAGGGCAGGACATTTTGGACAT...CTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GTTTTTCAAGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGCGTAGGGAGGTTCTTTaGTGTGGTCTTTTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: VFQDRVSLCAMAVLVLSLRREVL*CGLFLH
Trigger: GTGGAGGAAAAGACCACAGCAAAGAACCTCCCTACG...CAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCTTGAAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTCAAAATTTCTGCCAATaGTGTCTGACACGAGCGGCG +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTQNFCQ*CLTRAA
Trigger: CGCCGCTCGTGTCAGACAGCATTGGCAGAAATTTTG...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp AGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGATACTCTCAGCTGCTTaGCTTCGTACTTTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: RQGFFVCHGCPGTLFVDQILSAA*LRTLGQ
Trigger: TTGACCCAAAGTACGAAGCCAAGCAGCTGAGAGTAT...CTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp AACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCCAAGTGTAAATCCATaGACCATCACTGTCCTGAAA +
Preference number: 4 (lower is better)
Translates to: NSQRSAYFYLPSAEIKGVPSVNP*TITVLK
Trigger: TTTCAGGACAGTGATGGTTCATGGATTTACACTTGG...CACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp AACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACCACAGCATACTTTaGCTCTGGCATATAGCAAAT +
Preference number: 4 (lower is better)
Translates to: NSQRSAYFYLPSAEIKGVHHSIL*LWHIAN
Trigger: ATTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTG...CACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp CTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGACATGTACATTTCTTCAACGACTCCTTAGCTaGAGCCTTGATGTCCGTGAT +
Preference number: 4 (lower is better)
Translates to: LVLRLKACTTVWLTCTFLQRLLS*SLDVRD
Trigger: ATCACGGACATCAAGGCTGCAGCTAAGGAGTCGTTG...AAGAAATGTACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp GGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATACGAGTTTAATAATATaGTCAGTGGTTTGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: GNALRSADQQALAAVQVYTSLII*SVVWLL
Trigger: CAACAGCCAAACCACTGAGCATATTATTAAACTCGT...ATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp ATCTGCCCCTCTACTTTCTGTGTAAGCCTTGGATTTCTTTCTAGGGAACTGTCTCGTAGGGAGGTTCTTTaGTGTGGTCTTTTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: ICPSTFCVSLGFLSRELSRREVL*CGLFLH
Trigger: GTGGAGGAAAAGACCACAGCAAAGAACCTCCCTACG...AGACAGTTCCCTAGAAAGAAATCCAAGGCTTACACAGAAAGTAGAGGGGCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GCAGGCAACGATTTAGGATGCTTTCTTTACTTACTGAACATAAAGTCCACAGGTCATGAGGGTCACCGTTaGCATAAGGAGGCCCGTCAT +
Preference number: 4 (lower is better)
Translates to: AGNDLGCFLYLLNIKSTGHEGHR*HKEARH
Trigger: ATGACGGGCCTCCTTATGCCAACGGTGACCCTCATG...ACCTGTGGACTTTATGTTCAGTAAGTAAAGAAAGCATCCTAAATCGTTGCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CCA 90 bp CAAAGAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATGGAACCTCTCATCATATaGAATCGATTGGCAATGTCT +
Preference number: 4 (lower is better)
Translates to: QRTRWSFRRKSLFPPSPMEPLII*NRLAMS
Trigger: AGACATTGCCAATCGATTCCATATGATGAGAGGTTC...CATTGGACTTGGTGGGAACAGGCTCTTCCTTCTGAAGCTCCACCGTGTTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CCA 90 bp GCAGGCAACGATTTAGGATGCTTTCTTTACTTACTGAACATAAAGTCCACAGGTCAAACCACTGCTTGCTaGCTCGAATCAGCACGGGTG +
Preference number: 4 (lower is better)
Translates to: AGNDLGCFLYLLNIKSTGQTTAC*LESARV
Trigger: CACCCGTGCTGATTCGAGCCAGCAAGCAGTGGTTTG...ACCTGTGGACTTTATGTTCAGTAAGTAAAGAAAGCATCCTAAATCGTTGCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CCA 90 bp CTTGTAGAGGCACACAACTGCCACTCCCTGCAGAATCCCACGCTTCGTCATCCAATATGCTCAGTGGTTTaGCTGTTGATCAAATATTCA +
Preference number: 4 (lower is better)
Translates to: LVEAHNCHSLQNPTLRHPICSVV*LLIKYS
Trigger: TGAATATTTGATCAACAGCCAAACCACTGAGCATAT...TGGATGACGAAGCGTGGGATTCTGCAGGGAGTGGCAGTTGTGTGCCTCTACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTCCAGGAATAAAGCTCTaGAAAGCCACATTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTPGIKL*KATFLL
Trigger: CAGCAGAAATGTGGCTTTTCAGAGCTTTATTCCTGG...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTACACTTTTGTTTCAATaGGCAAGCCATGGCAATCCC +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTTLLFQ*ASHGNP
Trigger: GGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGT...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GTTTTTCAAGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGACACTTTTGTTTCAATaGGCAAGCCATGGCAATCCC +
Preference number: 4 (lower is better)
Translates to: VFQDRVSLCAMAVLVLSLTLLFQ*ASHGNP
Trigger: GGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGT...CAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCTTGAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTATACTCTCAGCTGCTTaGCTTCGTACTTTGGGTCAA +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTILSAA*LRTLGQ
Trigger: TTGACCCAAAGTACGAAGCCAAGCAGCTGAGAGTAT...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp AGCAGGCAACGATTTAGGATGCTTTCTTTACTTACTGAACATAAAGTCCACAGGAAGGGTGACTACAAGTaGCACCTTCCAGATCCACAC +
Preference number: 4 (lower is better)
Translates to: SRQRFRMLSLLTEHKVHRKGDYK*HLPDPH
Trigger: GTGTGGATCTGGAAGGTGGCACTTGTAGTCACCCTT...CCTGTGGACTTTATGTTCAGTAAGTAAAGAAAGCATCCTAAATCGTTGCCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp GCAGGCAACGATTTAGGATGCTTTCTTTACTTACTGAACATAAAGTCCACAGGTCAACGACTCCTTAGCTaGAGCCTTGATGTCCGTGAT +
Preference number: 4 (lower is better)
Translates to: AGNDLGCFLYLLNIKSTGQRLLS*SLDVRD
Trigger: ATCACGGACATCAAGGCTGCAGCTAAGGAGTCGTTG...ACCTGTGGACTTTATGTTCAGTAAGTAAAGAAAGCATCCTAAATCGTTGCCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp GTTTTTCAAGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGACATCACTGCCGTGCTaGTCGACGAGTTTAATAATA +
Preference number: 4 (lower is better)
Translates to: VFQDRVSLCAMAVLVLSLTSLPC*STSLII
Trigger: TATTATTAAACTCGTCGAGCAGCACGGCAGTGATGT...CAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCTTGAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR GCA 90 bp GCGTGCACTACTGTCTGGCTGACATGTACATTTCTTAGTGTTACTGTTTTGAACATGTCCAAAATGTCCTaGCCTGGCGCGTATTCCAAA +
Preference number: 4 (lower is better)
Translates to: ACTTVWLTCTFLSVTVLNMSKMS*PGAYSK
Trigger: TTTGGAATACGCGCCAGGGCAGGACATTTTGGACAT...GTTCAAAACAGTAACACTAAGAAATGTACATGTCAGCCAGACAGTAGTGCACGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp TCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACATATGCTCAGTGGTTTaGCTGTTGATCAAATATTCA +
Preference number: 4 (lower is better)
Translates to: SQRSAYFYLPSAEIKGVHICSVV*LLIKYS
Trigger: TGAATATTTGATCAACAGCCAAACCACTGAGCATAT...GTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTCATTCCCGAGGGACTTaGACATCTTTTCTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTHSRGT*TSFLLF
Trigger: AAAAAGGAGAAAAGATGTCCAAGTCCCTCGGGAATG...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR TCA 90 bp ATCTGCCCCTCTACTTTCTGTGTAAGCCTTGGATTTCTTTCTAGGGAACTGTCTCCAAGTGTAAATCCATaGACCATCACTGTCCTGAAA +
Preference number: 4 (lower is better)
Translates to: ICPSTFCVSLGFLSRELSPSVNP*TITVLK
Trigger: TTTCAGGACAGTGATGGTTCATGGATTTACACTTGG...AGACAGTTCCCTAGAAAGAAATCCAAGGCTTACACAGAAAGTAGAGGGGCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp ATCTGCCCCTCTACTTTCTGTGTAAGCCTTGGATTTCTTTCTAGGGAACTGTCTCACCACAGCATACTTTaGCTCTGGCATATAGCAAAT +
Preference number: 4 (lower is better)
Translates to: ICPSTFCVSLGFLSRELSHHSIL*LWHIAN
Trigger: ATTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTG...AGACAGTTCCCTAGAAAGAAATCCAAGGCTTACACAGAAAGTAGAGGGGCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp TCAAGACAGGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACACGAGTTTAATAATATaGTCAGTGGTTTGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: SRQGFFVCHGCPGTLFVDTSLII*SVVWLL
Trigger: CAACAGCCAAACCACTGAGCATATTATTAAACTCGT...GTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCCTGTCTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CCA 90 bp GGATTTCTTTCTAGGGAACTGTCTAACAGCTCATCTCCTCAGCCAGTCAGTACTGAACCTCTCATCATATaGAATCGATTGGCAATGTCT +
Preference number: 4 (lower is better)
Translates to: GFLSRELSNSSSPQPVSTEPLII*NRLAMS
Trigger: AGACATTGCCAATCGATTCCATATGATGAGAGGTTC...AGTACTGACTGGCTGAGGAGATGAGCTGTTAGACAGTTCCCTAGAAAGAAATCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CAA 72 bp ATTTCACAGAGCAATAAGTCAGACCATACTAGAACTTaGTACTCAGAGGCCTTATCTGTCACGCATTCCGTG +
Preference number: 4 (lower is better)
Translates to: ISQSNKSDHTRT*YSEALSVTHSV
Trigger: CACGGAATGCGTGACAGATAAGGCCTCTGAGTACAAAGTTCTAGTATGGTCTGACTTATTGCTCTGTGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR GCA 90 bp GCTTACACCGATTATAGCATTCACTTAGAAGTTGCTATAATCCACTTCATTAGGCATTTTTGCCAGGGATaGTGCCAAGAAAGGAGTCCC +
Preference number: 4 (lower is better)
Translates to: AYTDYSIHLEVAIIHFIRHFCQG*CQERSP
Trigger: GGGACTCCTTTCTTGGCAGCATCCCTGGCAAAAATG...CCTAATGAAGTGGATTATAGCAACTTCTAAGTGAATGCTATAATCGGTGTAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
3UTR CAA 72 bp GTAGGAACACAGAGATTTCTCCTCTTGAATAACAATTaGGTGATGCTCTTTGTAGTACACTCAGAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: VGTQRFLLLNNN*VMLFVVHSESC
Trigger: GCAGGACTCTGAGTGTACTACAAAGAGCATCACCAAATTGTTATTCAAGAGGAGAAATCTCTGTGTTCCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR GCA 90 bp GCTTACACCGATTATAGCATTCACTTAGAAGTTGCTATAATCCACTTCATTAGGCTGAAACACCTCTTCTaGCAAGTGAGGAAGAATGGG +
Preference number: 4 (lower is better)
Translates to: AYTDYSIHLEVAIIHFIRLKHLF*QVRKNG
Trigger: CCCATTCTTCCTCACTTGGCAGAAGAGGTGTTTCAG...CCTAATGAAGTGGATTATAGCAACTTCTAAGTGAATGCTATAATCGGTGTAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CCA 90 bp GCGTGCACTACTGTCTGGCTGACATGTACATTTCTTAGTGTTACTGTTTTGAACGAACCTCTCATCATATaGAATCGATTGGCAATGTCT +
Preference number: 4 (lower is better)
Translates to: ACTTVWLTCTFLSVTVLNEPLII*NRLAMS
Trigger: AGACATTGCCAATCGATTCCATATGATGAGAGGTTC...GTTCAAAACAGTAACACTAAGAAATGTACATGTCAGCCAGACAGTAGTGCACGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR TCA 90 bp AACGATTTAGGATGCTTTCTTTACTTACTGAACATAAAGTCCACAGGTTTCCAGCCAGGAATAAAGCTCTaGAAAGCCACATTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: NDLGCFLYLLNIKSTGFQPGIKL*KATFLL
Trigger: CAGCAGAAATGTGGCTTTTCAGAGCTTTATTCCTGG...CTGGAAACCTGTGGACTTTATGTTCAGTAAGTAAAGAAAGCATCCTAAATCGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR TCA 90 bp GCTTACACCGATTATAGCATTCACTTAGAAGTTGCTATAATCCACTTCATTAGGTTCCAGATCCACACCTaGAAATGCTGCAACAACATC +
Preference number: 4 (lower is better)
Translates to: AYTDYSIHLEVAIIHFIRFQIHT*KCCNNI
Trigger: GATGTTGTTGCAGCATTTTCAGGTGTGGATCTGGAA...CCTAATGAAGTGGATTATAGCAACTTCTAAGTGAATGCTATAATCGGTGTAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS CCA 90 bp ATCGTACCACGAGCCTCCTCGTCATCCCCAGACACCCTAGGCGGCTaGGCAAACGGGCTGGCCCCCAGAAGCTCCCAGCCGCGGCGACCG +
Preference number: 5 (lower is better)
Translates to: IVPRASSSSPDTLGG*ANGLAPRSSQPRRP
Trigger: CGGTCGCCGCGGCTGGGAGCTTCTGGGGGCCAGCCCGTTTGCCCAGCCGCCTAGGGTGTCTGGGGATGACGAGGAGGCTCGTGGTACGAT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS GCA 90 bp TCATCGGGAAGCTGGTCTGCGGCAGCAGCACCGTGTCACGGTATCTaGCGCCTTTCGAGCTGCTCTGGGGGCTGTCCGCCCCGGCCACGG +
Preference number: 5 (lower is better)
Translates to: SSGSWSAAAAPCHGI*RLSSCSGGCPPRPR
Trigger: CCGTGGCCGGGGCGGACAGCCCCCAGAGCAGCTCGAAAGGCGGCAGATACCGTGACACGGTGCTGCTGCCGCAGACCAGCTTCCCGATGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 90 bp GGCAGCAGCACCGTGTCACGGTATCTGCCGCCTTTCGAGCTGCTCTaGGGGCTGTCCGCCCCGGCCACGGATCGTACCACGAGCCTCCTC +
Preference number: 5 (lower is better)
Translates to: GSSTVSRYLPPFELL*GLSAPATDRTTSLL
Trigger: GAGGAGGCTCGTGGTACGATCCGTGGCCGGGGCGGACAGCCCCCAGAGCAGCTCGAAAGGCGGCAGATACCGTGACACGGTGCTGCTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp CATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTGGCATATAGCAAATaGCCTGGTTGGCGGGAATTG +
Preference number: 5 (lower is better)
Translates to: HQGKPRQWGSSDGSQSPGLAYSK*PGWREL
Trigger: CAATTCCCGCCAACCAGGCAATTTGCTATATGCCAG...CCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCTGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS CCA 90 bp GTGGCCACACTTGTTAGTAAGGAAGACTGGAACCAGCCCCCGAGCTaGTCCTTTCCCTCCAGGTACAAGTCTGCCCTCTGCTGCGTGTCT +
Preference number: 5 (lower is better)
Translates to: VATLVSKEDWNQPPS*SFPSRYKSALCCVS
Trigger: AGACACGCAGCAGAGGGCAGACTTGTACCTGGAGGGAAAGGACCAGCTCGGGGGCTGGTTCCAGTCTTCCTTACTAACAAGTGTGGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS CCA 90 bp CAGCAGCATTTTTGCCAGGGATGCTGCCAAGAAAGGAGTCCCTCATaGCGCACGCACTTTCCACTGCCTCCTCCAGTCCTGGCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: QQHFCQGCCQERSPS*RTHFPLPPPVLASS
Trigger: GGAAGAAGCCAGGACTGGAGGAGGCAGTGGAAAGTGCGTGCGCCATGAGGGACTCCTTTCTTGGCAGCATCCCTGGCAAAAATGCTGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS CCA 90 bp GACGAATGTCCCCGTGAGCTCAATGTCACCTGCAGTTCTTTCCCGTaGCTCCTGAGCCAGCAATGTCGTCTGGGAAGCCATCATCAGCTC +
Preference number: 5 (lower is better)
Translates to: DECPRELNVTCSSFP*LLSQQCRLGSHHQL
Trigger: GAGCTGATGATGGCTTCCCAGACGACATTGCTGGCTCAGGAGCCACGGGAAAGAACTGCAGGTGACATTGAGCTCACGGGGACATTCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp AGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCCGGGCTCTTCACCACAGCATACTTaGCCTCTGGCATATAGCAAA +
Preference number: 5 (lower is better)
Translates to: RENPGSGAALTAANHPGSSPQHT*PLAYSK
Trigger: TTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTGA...AGAGCCCGGGTGATTGGCTGCCGTCAGAGCTGCCCCACTGCCTGGGTTTTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CAA 90 bp CACACAGCAGCAGCAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCACAACAACATCAAATGTaGTTTCCAAGGCAGAAGCGA +
Preference number: 5 (lower is better)
Translates to: HTAAAEHALPPHGVECWAQQHQM*FPRQKR
Trigger: TCGCTTCTGCCTTGGAAACAACATTTGATGTTGTTG...TGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTGCTGCTGCTGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp CAGAGCACGCCCTTCCACCTCACGGGGTGGAGTGCTGGGCAACTAGCTTCTACTTTTACAAACCACTGCTaGCTGGCTCGAATCAGCACG +
Preference number: 5 (lower is better)
Translates to: QSTPFHLTGWSAGQLASTFTNHC*LARIST
Trigger: CGTGCTGATTCGAGCCAGCAAGCAGTGGTTTGTAAA...AGTAGAAGCTAGTTGCCCAGCACTCCACCCCGTGAGGTGGAAGGGCGTGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS CCA 90 bp GAGGCTGTGCTGAGATGCTACGCTGTAATCTTCCATACCGTGAGCTaGGGCTGTGTGAACCAACCCTGTTCCTTTGGCCATAGTCACGTG +
Preference number: 5 (lower is better)
Translates to: EAVLRCYAVIFHTVS*GCVNQPCSFGHSHV
Trigger: CACGTGACTATGGCCAAAGGAACAGGGTTGGTTCACACAGCCCCAGCTCACGGTATGGAAGATTACAGCGTAGCATCTCAGCACAGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp TCTGACGGCAGCCAATCACCCGGGCTCTGCTATCAGCAGCATGTGCTATTTAGCACCAACCCTGTTCCTTaGGCCATAGTCACGTGGGTA +
Preference number: 5 (lower is better)
Translates to: SDGSQSPGLCYQQHVLFSTNPVP*AIVTWV
Trigger: TACCCACGTGACTATGGCCAAAGGAACAGGGTTGGT...GCTAAATAGCACATGCTGCTGATAGCAGAGCCCGGGTGATTGGCTGCCGTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS CCA 90 bp GGAGTCCCTCATGGCGCACGCACTTTCCACTGCCTCCTCCAGTCCTaGCTTCTTCCAAATAGAGCTTGTATTAATCCAGCCAGTGCGAAA +
Preference number: 5 (lower is better)
Translates to: GVPHGARTFHCLLQS*LLPNRACINPASAK
Trigger: TTTCGCACTGGCTGGATTAATACAAGCTCTATTTGGAAGAAGCCAGGACTGGAGGAGGCAGTGGAAAGTGCGTGCGCCATGAGGGACTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp CTTGTAGAGGCACACAACTGCCACTCCCTGCAGAATCCCACGCTTCGTCATCCACTGGCATATAGCAAATaGCCTGGTTGGCGGGAATTG +
Preference number: 5 (lower is better)
Translates to: LVEAHNCHSLQNPTLRHPLAYSK*PGWREL
Trigger: CAATTCCCGCCAACCAGGCAATTTGCTATATGCCAG...TGGATGACGAAGCGTGGGATTCTGCAGGGAGTGGCAGTTGTGTGCCTCTACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp TCTAACACACGGTGGTGTCCTGCAACAAGGGCGTGGCATGTGCTGGAAACCTTAACCAACCCTGTTCCTTaGGCCATAGTCACGTGGGTA +
Preference number: 5 (lower is better)
Translates to: SNTRWCPATRAWHVLETLTNPVP*AIVTWV
Trigger: TACCCACGTGACTATGGCCAAAGGAACAGGGTTGGT...TAAGGTTTCCAGCACATGCCACGCCCTTGTTGCAGGACACCACCGTGTGTTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp GTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATGCGCAGGCTGTATTTACAAACCACTGCTaGCTGGCTCGAATCAGCACG +
Preference number: 5 (lower is better)
Translates to: VELQKEEPVPTKSNAQAVFTNHC*LARIST
Trigger: CGTGCTGATTCGAGCCAGCAAGCAGTGGTTTGTAAA...TACAGCCTGCGCATTGGACTTGGTGGGAACAGGCTCTTCCTTCTGAAGCTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CAA 90 bp TCTAACACACGGTGGTGTCCTGCAACAAGGGCGTGGCATGTGCTGGAAACCTTAACCTCCGTGAAGACATaGGACTCAGCTATCCACCAG +
Preference number: 5 (lower is better)
Translates to: SNTRWCPATRAWHVLETLTSVKT*DSAIHQ
Trigger: CTGGTGGATAGCTGAGTCCAATGTCTTCACGGAGGT...TAAGGTTTCCAGCACATGCCACGCCCTTGTTGCAGGACACCACCGTGTGTTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS GCA 90 bp AGAAGCTGCTCAGCAGGGAGGGTCCACCACACATCACTGCCGTGCTaGTCGACGAGTTTAATAATATGCTCAGTGGTTTGGCTGTTGATC +
Preference number: 5 (lower is better)
Translates to: RSCSAGRVHHTSLPC*STSLIICSVVWLLI
Trigger: GATCAACAGCCAAACCACTGAGCATATTATTAAACTCGTCGAGCAGCACGGCAGTGATGTGTGGTGGACCCTCCCTGCTGAGCAGCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS CCA 90 bp GGTCTCCTCAGCTTGGAGCATCTCCATGATCTCAAACAGCAGCCCTaGCTCGATCACTATGATGACCTCGTACTCAGCAGCATTTTTGCC +
Preference number: 5 (lower is better)
Translates to: GLLSLEHLHDLKQQP*LDHYDDLVLSSIFA
Trigger: GGCAAAAATGCTGCTGAGTACGAGGTCATCATAGTGATCGAGCCAGGGCTGCTGTTTGAGATCATGGAGATGCTCCAAGCTGAGGAGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp GTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATGCGCAGGCTGTACTGACATGCTCAGGGTaGTATTCAAGCTCTGCTTCA +
Preference number: 5 (lower is better)
Translates to: VELQKEEPVPTKSNAQAVLTCSG*YSSSAS
Trigger: TGAAGCAGAGCTTGAATACAACCCTGAGCATGTCAG...TACAGCCTGCGCATTGGACTTGGTGGGAACAGGCTCTTCCTTCTGAAGCTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CAA 90 bp GAGCCTGTTCCCACCAAGTCCAATGCGCAGGCTGTAGAGGCAGCAGGCAACGATCAACAACATCAAATGTaGTTTCCAAGGCAGAAGCGA +
Preference number: 5 (lower is better)
Translates to: EPVPTKSNAQAVEAAGNDQQHQM*FPRQKR
Trigger: TCGCTTCTGCCTTGGAAACAACATTTGATGTTGTTG...ATCGTTGCCTGCTGCCTCTACAGCCTGCGCATTGGACTTGGTGGGAACAGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CAA 90 bp GGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATTACTCAGCAGCATTTTaGCCAGGGATGCTGCCAAGA +
Preference number: 5 (lower is better)
Translates to: GNALRSADQQALAAVQVYYSAAF*PGMLPR
Trigger: TCTTGGCAGCATCCCTGGCAAAAATGCTGCTGAGTA...ATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS TCA 90 bp TGGTCCTTTCCCTCCAGGTACAAGTCTGCCCTCTGCTGCGTGTCTTaGAGAACACAAGACCATGAAGTTCCACTGTCAAACCAGATGTCC +
Preference number: 5 (lower is better)
Translates to: WSFPSRYKSALCCVS*RTQDHEVPLSNQMS
Trigger: GGACATCTGGTTTGACAGTGGAACTTCATGGTCTTGTGTTCTTCAAGACACGCAGCAGAGGGCAGACTTGTACCTGGAGGGAAAGGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS GCA 90 bp GATGCTGCCAAGAAAGGAGTCCCTCATGGCGCACGCACTTTCCACTaGCTCCTCCAGTCCTGGCTTCTTCCAAATAGAGCTTGTATTAAT +
Preference number: 5 (lower is better)
Translates to: DAAKKGVPHGARTFH*LLQSWLLPNRACIN
Trigger: ATTAATACAAGCTCTATTTGGAAGAAGCCAGGACTGGAGGAGGCAGTGGAAAGTGCGTGCGCCATGAGGGACTCCTTTCTTGGCAGCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS CCA 90 bp GACTCTGGGCATCTACACCGAGCTCTGATAACACTTTTGTTTCAATaGGCAAGCCATGGCAATCCCAGCCAGGCACAAAGTGTACCTTGG +
Preference number: 5 (lower is better)
Translates to: DSGHLHRALITLLFQ*ASHGNPSQAQSVPW
Trigger: CCAAGGTACACTTTGTGCCTGGCTGGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGTTATCAGAGCTCGGTGTAGATGCCCAGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp GAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTCCAATGCGCAGCTTGGCTTCGTACTTaGGGTCAAATGTGTAATAGC +
Preference number: 5 (lower is better)
Translates to: EHGGASEGRACSHQVQCAAWLRT*GQMCNS
Trigger: GCTATTACACATTTGACCCAAAGTACGAAGCCAAGC...TGCGCATTGGACTTGGTGGGAACAGGCTCTTCCTTCTGAAGCTCCACCGTGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CAA 90 bp ATGTACAAATGGAGGGGCCGGGAGAAATGTAGTCAGCAGTACACAGCACCAGGCCTGACATGCTCAGGGTaGTATTCAAGCTCTGCTTCA +
Preference number: 5 (lower is better)
Translates to: MYKWRGREKCSQQYTAPGLTCSG*YSSSAS
Trigger: TGAAGCAGAGCTTGAATACAACCCTGAGCATGTCAG...GCCTGGTGCTGTGTACTGCTGACTACATTTCTCCCGGCCCCTCCATTTGTACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp TCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGACATGTACCAACCCTGTTCCTTaGGCCATAGTCACGTGGGTA +
Preference number: 5 (lower is better)
Translates to: STSLVLRLKACTTVWLTCTNPVP*AIVTWV
Trigger: TACCCACGTGACTATGGCCAAAGGAACAGGGTTGGT...ACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS TCA 90 bp GTACAAGTCTGCCCTCTGCTGCGTGTCTTGAAGAACACAAGACCATaGAGTTCCACTGTCAAACCAGATGTCCAAAATGTCCTGCCCTGG +
Preference number: 5 (lower is better)
Translates to: VQVCPLLRVLKNTRP*SSTVKPDVQNVLPW
Trigger: CCAGGGCAGGACATTTTGGACATCTGGTTTGACAGTGGAACTTCATGGTCTTGTGTTCTTCAAGACACGCAGCAGAGGGCAGACTTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp GGAAATGCACTGCGCTCTGCAGATCAGCAAGCCCTGGCTGCAGTTCAAGTGTATGCTTGGCTTCGTACTTaGGGTCAAATGTGTAATAGC +
Preference number: 5 (lower is better)
Translates to: GNALRSADQQALAAVQVYAWLRT*GQMCNS
Trigger: GCTATTACACATTTGACCCAAAGTACGAAGCCAAGC...ATACACTTGAACTGCAGCCAGGGCTTGCTGATCTGCAGAGCGCAGTGCATTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp TCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGACATGTTTTACAAACCACTGCTaGCTGGCTCGAATCAGCACG +
Preference number: 5 (lower is better)
Translates to: STSLVLRLKACTTVWLTCFTNHC*LARIST
Trigger: CGTGCTGATTCGAGCCAGCAAGCAGTGGTTTGTAAA...ACATGTCAGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp AGCAGTCCAAGTGCTGACAAGTGTGAGGAAATGCACTGCGCTCTGCAGATCAGCACATTCCCGAGGGACTaGGACATCTTTTCTCCTTTT +
Preference number: 5 (lower is better)
Translates to: SSPSADKCEEMHCALQISTFPRD*DIFSPF
Trigger: AAAAGGAGAAAAGATGTCCAAGTCCCTCGGGAATGT...GCTGATCTGCAGAGCGCAGTGCATTTCCTCACACTTGTCAGCACTTGGACTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp GGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTGGACATTCCCGAGGGACTaGGACATCTTTTCTCCTTTT +
Preference number: 5 (lower is better)
Translates to: GFLCVPWLSWYSLCRPGWTFPRD*DIFSPF
Trigger: AAAAGGAGAAAAGATGTCCAAGTCCCTCGGGAATGT...CCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp TCAAACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCACCTCCGTGAAGACATaGGACTCAGCTATCCACCAG +
Preference number: 5 (lower is better)
Translates to: SNSQRSAYFYLPSAEIKGTSVKT*DSAIHQ
Trigger: CTGGTGGATAGCTGAGTCCAATGTCTTCACGGAGGT...GCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS CCA 90 bp TCTACACCGAGCTCTGATAACACTTTTGTTTCAATGGGCAAGCCATaGCAATCCCAGCCAGGCACAAAGTGTACCTTGGAACCTCTCATC +
Preference number: 5 (lower is better)
Translates to: STPSSDNTFVSMGKP*QSQPGTKCTLEPLI
Trigger: GATGAGAGGTTCCAAGGTACACTTTGTGCCTGGCTGGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGTTATCAGAGCTCGGTGTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp GCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTGCTTGGCTTCGTACTTaGGGTCAAATGTGTAATAGC +
Preference number: 5 (lower is better)
Translates to: AYFYLPSAEIKGVHYCLAAWLRT*GQMCNS
Trigger: GCTATTACACATTTGACCCAAAGTACGAAGCCAAGC...AGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp AACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCTGACATGCTCAGGGTaGTATTCAAGCTCTGCTTCA +
Preference number: 5 (lower is better)
Translates to: NSQRSAYFYLPSAEIKGVLTCSG*YSSSAS
Trigger: TGAAGCAGAGCTTGAATACAACCCTGAGCATGTCAG...CACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp GCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACTACTGTCTGGCTTCACCACAGCATACTTaGCCTCTGGCATATAGCAAA +
Preference number: 5 (lower is better)
Translates to: AYFYLPSAEIKGVHYCLASPQHT*PLAYSK
Trigger: TTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTGA...AGCCAGACAGTAGTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp GGGTTTCTTTGTGTGCCATGGCTGTCCTGGTACTCTCTTTGTAGACCAGGCTGGCAACAACATCAAATGTaGTTTCCAAGGCAGAAGCGA +
Preference number: 5 (lower is better)
Translates to: GFLCVPWLSWYSLCRPGWQQHQM*FPRQKR
Trigger: TCGCTTCTGCCTTGGAAACAACATTTGATGTTGTTG...CCAGCCTGGTCTACAAAGAGAGTACCAGGACAGCCATGGCACACAAAGAAACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp TCAAACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCACCTGGTGGCCACACTaGTTAGTAAGGAAGACTGGA +
Preference number: 5 (lower is better)
Translates to: SNSQRSAYFYLPSAEIKGTWWPH*LVRKTG
Trigger: TCCAGTCTTCCTTACTAACAAGTGTGGCCACCAGGT...GCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS GCA 90 bp TGCTGCAACAACATCAAATGTTGTTTCCAAGGCAGAAGCGACAGGTaGTATTTTATCTTCAGCCAGGATGTAGAGGTGCCCAGAGGCAGA +
Preference number: 5 (lower is better)
Translates to: CCNNIKCCFQGRSDR*YFIFSQDVEVPRGR
Trigger: TCTGCCTCTGGGCACCTCTACATCCTGGCTGAAGATAAAATAGCACCTGTCGCTTCTGCCTTGGAAACAACATTTGATGTTGTTGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 90 bp CTTTCAAAATCTTGTTCAGGGCATGCCCAACATGAGGGTCACCGTTaGCATAAGGAGGCCCGTCATGAAGGCAAAATTCCGTCTTTACTT +
Preference number: 5 (lower is better)
Translates to: LSKSCSGHAQHEGHR*HKEARHEGKIPSLL
Trigger: AAGTAAAGACGGAATTTTGCCTTCATGACGGGCCTCCTTATGCCAACGGTGACCCTCATGTTGGGCATGCCCTGAACAAGATTTTGAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 90 bp GCAAATGATCTGGCTTTCTCCCTGATCTCCATGGCTGAAAGACTCTaGGCATCTACACCGAGCTCTGATAACACTTTTGTTTCAATGGGC +
Preference number: 5 (lower is better)
Translates to: ANDLAFSLISMAERL*ASTPSSDNTFVSMG
Trigger: GCCCATTGAAACAAAAGTGTTATCAGAGCTCGGTGTAGATGCCCAGAGTCTTTCAGCCATGGAGATCAGGGAGAAAGCCAGATCATTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp TCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCGTGCACATGTCTTTCAAAATCTaGTTCAGGGCATGCCCAACA +
Preference number: 5 (lower is better)
Translates to: SQRSAYFYLPSAEIKGVHMSFKI*FRACPT
Trigger: TGTTGGGCATGCCCTGAACAAGATTTTGAAAGACAT...GTGCACGCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGATCACCACAGCATACTTaGCCTCTGGCATATAGCAAA +
Preference number: 5 (lower is better)
Translates to: VQNCLFLGLGHVACPGTGSPQHT*PLAYSK
Trigger: TTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTGA...TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp GTAGTACACTCAGAGTCCTGCTGCTTTAGAAACTTGGTGTTTGCTAGTGGGCAGAGTGTGTTTCTGAGCTaGCTGATGTCATCTCTGGCA +
Preference number: 5 (lower is better)
Translates to: VVHSESCCFRNLVFASGQSVFLS*LMSSLA
Trigger: TGCCAGAGATGACATCAGCAAGCTCAGAAACACACT...CTGCCCACTAGCAAACACCAAGTTTCTAAAGCAGCAGGACTCTGAGTGTACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp TCTAAATGTGACAAAGAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACATGTCTTTCAAAATCTaGTTCAGGGCATGCCCAACA +
Preference number: 5 (lower is better)
Translates to: SKCDKEHGGASEGRACSHMSFKI*FRACPT
Trigger: TGTTGGGCATGCCCTGAACAAGATTTTGAAAGACAT...GTGGGAACAGGCTCTTCCTTCTGAAGCTCCACCGTGTTCTTTGTCACATTTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CAA 90 bp GCGTGCACTACTGTCTGGCTGACATGTACATTTCTTAGTGTTACTGTTTTGAACCTGGCATATAGCAAATaGCCTGGTTGGCGGGAATTG +
Preference number: 5 (lower is better)
Translates to: ACTTVWLTCTFLSVTVLNLAYSK*PGWREL
Trigger: CAATTCCCGCCAACCAGGCAATTTGCTATATGCCAG...GTTCAAAACAGTAACACTAAGAAATGTACATGTCAGCCAGACAGTAGTGCACGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp GTTCAAAACTGTCTGTTTCTGGGACTTGGTCATGTTGCCTGTCCGGGAACAGGAAATATGCTCAGTGGTTaGGCTGTTGATCAAATATTC +
Preference number: 5 (lower is better)
Translates to: VQNCLFLGLGHVACPGTGNMLSG*AVDQIF
Trigger: GAATATTTGATCAACAGCCAAACCACTGAGCATATT...TCCTGTTCCCGGACAGGCAACATGACCAAGTCCCAGAAACAGACAGTTTTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp ATCTGCCCCTCTACTTTCTGTGTAAGCCTTGGATTTCTTTCTAGGGAACTGTCTGCTCTGATAACACTTTaGTTTCAATGGGCAAGCCAT +
Preference number: 5 (lower is better)
Translates to: ICPSTFCVSLGFLSRELSALITL*FQWASH
Trigger: ATGGCTTGCCCATTGAAACAAAAGTGTTATCAGAGC...AGACAGTTCCCTAGAAAGAAATCCAAGGCTTACACAGAAAGTAGAGGGGCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp TCAAACTCCCAGAGATCTGCCTACTTCTACCTCCCTAGTGCTGAGATTAAAGGCAATATGCTCAGTGGTTaGGCTGTTGATCAAATATTC +
Preference number: 5 (lower is better)
Translates to: SNSQRSAYFYLPSAEIKGNMLSG*AVDQIF
Trigger: GAATATTTGATCAACAGCCAAACCACTGAGCATATT...GCCTTTAATCTCAGCACTAGGGAGGTAGAAGTAGGCAGATCTCTGGGAGTTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110975.8
CDS-3UTR CAA 90 bp GCTTACACCGATTATAGCATTCACTTAGAAGTTGCTATAATCCACTTCATTAGGACCTGGTGGCCACACTaGTTAGTAAGGAAGACTGGA +
Preference number: 5 (lower is better)
Translates to: AYTDYSIHLEVAIIHFIRTWWPH*LVRKTG
Trigger: TCCAGTCTTCCTTACTAACAAGTGTGGCCACCAGGT...CCTAATGAAGTGGATTATAGCAACTTCTAAGTGAATGCTATAATCGGTGTAAGC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS CCA 90 bp AAACCAAGCCCTTCTCATACATTTGGTAGAATACTCTCAGCTGCTTaGCTTCGTACTTTGGGTCAAATGTGTAATAGCAGTTATTCCAGT +
Preference number: 5 (lower is better)
Translates to: KPSPSHTFGRILSAA*LRTLGQMCNSSYSS
Trigger: ACTGGAATAACTGCTATTACACATTTGACCCAAAGTACGAAGCCAAGCAGCTGAGAGTATTCTACCAAATGTATGAGAAGGGCTTGGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS TCA 90 bp ACCTTAGCGCGTAAGTCAACAGTGCTGGTGACAACATACGTCTGTTaGTCAAATATTCATCTTTTGTCTTATGATGAAACACAGGAATGG +
Preference number: 5 (lower is better)
Translates to: TLARKSTVLVTTYVC*SNIHLLSYDETQEW
Trigger: CCATTCCTGTGTTTCATCATAAGACAAAAGATGAATATTTGATCAACAGACGTATGTTGTCACCAGCACTGTTGACTTACGCGCTAAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS-3UTR CAA 90 bp GCTTACACCGATTATAGCATTCACTTAGAAGTTGCTATAATCCACTTCATTAGGATGTCTTTCAAAATCTaGTTCAGGGCATGCCCAACA +
Preference number: 5 (lower is better)
Translates to: AYTDYSIHLEVAIIHFIRMSFKI*FRACPT
Trigger: TGTTGGGCATGCCCTGAACAAGATTTTGAAAGACAT...CCTAATGAAGTGGATTATAGCAACTTCTAAGTGAATGCTATAATCGGTGTAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS-3UTR CAA 90 bp AACGATTTAGGATGCTTTCTTTACTTACTGAACATAAAGTCCACAGGTTTCCAGGCTCTGATAACACTTTaGTTTCAATGGGCAAGCCAT +
Preference number: 5 (lower is better)
Translates to: NDLGCFLYLLNIKSTGFQALITL*FQWASH
Trigger: ATGGCTTGCCCATTGAAACAAAAGTGTTATCAGAGC...CTGGAAACCTGTGGACTTTATGTTCAGTAAGTAAAGAAAGCATCCTAAATCGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4
CDS CCA 72 bp CGAGCCTCCTCGTCATCCCCAGACACCCTAGGCGGCTaGGCAAACGGGCTGGCCCCCAGAAGCTCCCAGCCG +
Preference number: 6 (lower is better)
Translates to: RASSSSPDTLGG*ANGLAPRSSQP
Trigger: CGGCTGGGAGCTTCTGGGGGCCAGCCCGTTTGCCCAGCCGCCTAGGGTGTCTGGGGATGACGAGGAGGCTCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS GCA 72 bp AGCTGGTCTGCGGCAGCAGCACCGTGTCACGGTATCTaGCGCCTTTCGAGCTGCTCTGGGGGCTGTCCGCCC +
Preference number: 6 (lower is better)
Translates to: SWSAAAAPCHGI*RLSSCSGGCPP
Trigger: GGGCGGACAGCCCCCAGAGCAGCTCGAAAGGCGGCAGATACCGTGACACGGTGCTGCTGCCGCAGACCAGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp ACCGTGTCACGGTATCTGCCGCCTTTCGAGCTGCTCTaGGGGCTGTCCGCCCCGGCCACGGATCGTACCACG +
Preference number: 6 (lower is better)
Translates to: TVSRYLPPFELL*GLSAPATDRTT
Trigger: CGTGGTACGATCCGTGGCCGGGGCGGACAGCCCCCAGAGCAGCTCGAAAGGCGGCAGATACCGTGACACGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS GCA 72 bp GCCCCCGAGCTGGTCCTTTCCCTCCAGGTACAAGTCTaGCCTCTGCTGCGTGTCTTGAAGAACACAAGACCA +
Preference number: 6 (lower is better)
Translates to: APELVLSLQVQV*PLLRVLKNTRP
Trigger: TGGTCTTGTGTTCTTCAAGACACGCAGCAGAGGGCAGACTTGTACCTGGAGGGAAAGGACCAGCTCGGGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS CCA 72 bp TTTTGCCAGGGATGCTGCCAAGAAAGGAGTCCCTCATaGCGCACGCACTTTCCACTGCCTCCTCCAGTCCTG +
Preference number: 6 (lower is better)
Translates to: FCQGCCQERSPS*RTHFPLPPPVL
Trigger: CAGGACTGGAGGAGGCAGTGGAAAGTGCGTGCGCCATGAGGGACTCCTTTCTTGGCAGCATCCCTGGCAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS TCA 72 bp CAGCAGAGAGTACAGAGGGGCCAATGGTCACCTCCGTaGAGACATTGGACTCAGCTATCCACCAGCGCAGGA +
Preference number: 6 (lower is better)
Translates to: QQRVQRGQWSPP*RHWTQLSTSAG
Trigger: TCCTGCGCTGGTGGATAGCTGAGTCCAATGTCTTCACGGAGGTGACCATTGGCCCCTCTGTACTCTCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS CCA 72 bp CTTGTTAGTAAGGAAGACTGGAACCAGCCCCCGAGCTaGTCCTTTCCCTCCAGGTACAAGTCTGCCCTCTGC +
Preference number: 6 (lower is better)
Translates to: LVSKEDWNQPPS*SFPSRYKSALC
Trigger: GCAGAGGGCAGACTTGTACCTGGAGGGAAAGGACCAGCTCGGGGGCTGGTTCCAGTCTTCCTTACTAACAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS GCA 72 bp GAAGTTCCACTGTCAAACCAGATGTCCAAAATGTCCTaGCCTGGCGCGTATTCCAAAGCCCCAGGGCCACCA +
Preference number: 6 (lower is better)
Translates to: EVPLSNQMSKMS*PGAYSKAPGPP
Trigger: TGGTGGCCCTGGGGCTTTGGAATACGCGCCAGGGCAGGACATTTTGGACATCTGGTTTGACAGTGGAACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS CAA 72 bp AGTACAGAGGGGCCAATGGTCACCTCCGTGAAGACATaGGACTCAGCTATCCACCAGCGCAGGATGTCAGCT +
Preference number: 6 (lower is better)
Translates to: STEGPMVTSVKT*DSAIHQRRMSA
Trigger: AGCTGACATCCTGCGCTGGTGGATAGCTGAGTCCAATGTCTTCACGGAGGTGACCATTGGCCCCTCTGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS CCA 72 bp TCTTGTTCAGGGCATGCCCAACATGAGGGTCACCGTTaGCATAAGGAGGCCCGTCATGAAGGCAAAATTCCG +
Preference number: 6 (lower is better)
Translates to: SCSGHAQHEGHR*HKEARHEGKIP
Trigger: CGGAATTTTGCCTTCATGACGGGCCTCCTTATGCCAACGGTGACCCTCATGTTGGGCATGCCCTGAACAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS TCA 72 bp CGGACCAACACATCCAAAATTTCTGCCAATGCTGTCTaGCACGAGCGGCGCTTGGGATCCTTCTCGTTTTCG +
Preference number: 6 (lower is better)
Translates to: RTNTSKISANAV*HERRLGSFSFS
Trigger: CGAAAACGAGAAGGATCCCAAGCGCCGCTCGTGTCAGACAGCATTGGCAGAAATTTTGGATGTGTTGGTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS GCA 72 bp GTGCCCAGAGGCAGAACATTTCACCACAGCATACTTTaGCTCTGGCATATAGCAAATTGCCTGGTTGGCGGG +
Preference number: 6 (lower is better)
Translates to: VPRGRTFHHSIL*LWHIANCLVGG
Trigger: CCCGCCAACCAGGCAATTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTGAAATGTTCTGCCTCTGGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS GCA 72 bp TCAGCAGGGAGGGTCCACCACACATCACTGCCGTGCTaGTCGACGAGTTTAATAATATGCTCAGTGGTTTGG +
Preference number: 6 (lower is better)
Translates to: SAGRVHHTSLPC*STSLIICSVVW
Trigger: CCAAACCACTGAGCATATTATTAAACTCGTCGAGCAGCACGGCAGTGATGTGTGGTGGACCCTCCCTGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS CCA 72 bp CTGAGATGCTACGCTGTAATCTTCCATACCGTGAGCTaGGGCTGTGTGAACCAACCCTGTTCCTTTGGCCAT +
Preference number: 6 (lower is better)
Translates to: LRCYAVIFHTVS*GCVNQPCSFGH
Trigger: ATGGCCAAAGGAACAGGGTTGGTTCACACAGCCCCAGCTCACGGTATGGAAGATTACAGCGTAGCATCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp CATGGCGCACGCACTTTCCACTGCCTCCTCCAGTCCTaGCTTCTTCCAAATAGAGCTTGTATTAATCCAGCC +
Preference number: 6 (lower is better)
Translates to: HGARTFHCLLQS*LLPNRACINPA
Trigger: GGCTGGATTAATACAAGCTCTATTTGGAAGAAGCCAGGACTGGAGGAGGCAGTGGAAAGTGCGTGCGCCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS CAA 72 bp GGTGCCCAGAGGCAGAACATTTCACCACAGCATACTTaGCCTCTGGCATATAGCAAATTGCCTGGTTGGCGG +
Preference number: 6 (lower is better)
Translates to: GAQRQNISPQHT*PLAYSKLPGWR
Trigger: CCGCCAACCAGGCAATTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTGAAATGTTCTGCCTCTGGGCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 90 bp GGATGTAGAGGTGCCCAGAGGCAGAACATTTCACCACAGCATACTTaGCCTCTGGCATATAGCAAATTGCCTGGTTGGCGGGAATTGTCC +
Preference number: 6 (lower is better)
Translates to: GCRGAQRQNISPQHT*PLAYSKLPGWRELS
Trigger: GGACAATTCCCGCCAACCAGGCAATTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTGAAATGTTCTGCCTCTGGGCACCTCTACATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS TCA 72 bp CAATGGCTGCCTGAGCAAATGATCTGGCTTTCTCCCTaGTCTCCATGGCTGAAAGACTCTGGGCATCTACAC +
Preference number: 6 (lower is better)
Translates to: QWLPEQMIWLSP*SPWLKDSGHLH
Trigger: GTGTAGATGCCCAGAGTCTTTCAGCCATGGAGATCAGGGAGAAAGCCAGATCATTTGCTCAGGCAGCCATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS TCA 72 bp CCCTCCAGGTACAAGTCTGCCCTCTGCTGCGTGTCTTaGAGAACACAAGACCATGAAGTTCCACTGTCAAAC +
Preference number: 6 (lower is better)
Translates to: PSRYKSALCCVS*RTQDHEVPLSN
Trigger: GTTTGACAGTGGAACTTCATGGTCTTGTGTTCTTCAAGACACGCAGCAGAGGGCAGACTTGTACCTGGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027921.11
ENSMUST00000110975.8
CDS GCA 72 bp AAAAGCACGGACCAACACATCCAAAATTTCTGCCAATaGTGTCTGACACGAGCGGCGCTTGGGATCCTTCTC +
Preference number: 6 (lower is better)
Translates to: KSTDQHIQNFCQ*CLTRAALGILL
Trigger: GAGAAGGATCCCAAGCGCCGCTCGTGTCAGACAGCATTGGCAGAAATTTTGGATGTGTTGGTCCGTGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS CAA 72 bp GACTCTGGGCATCTACACCGAGCTCTGATAACACTTTaGTTTCAATGGGCAAGCCATGGCAATCCCAGCCAG +
Preference number: 6 (lower is better)
Translates to: DSGHLHRALITL*FQWASHGNPSQ
Trigger: CTGGCTGGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGTTATCAGAGCTCGGTGTAGATGCCCAGAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 90 bp TGGCTGAAAGACTCTGGGCATCTACACCGAGCTCTGATAACACTTTaGTTTCAATGGGCAAGCCATGGCAATCCCAGCCAGGCACAAAGT +
Preference number: 6 (lower is better)
Translates to: WLKDSGHLHRALITL*FQWASHGNPSQAQS
Trigger: ACTTTGTGCCTGGCTGGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGTTATCAGAGCTCGGTGTAGATGCCCAGAGTCTTTCAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 90 bp TCCTTAGCTGCAGCCTTGATGTCCGTGATATTTACAAACCACTGCTaGCTGGCTCGAATCAGCACGGGTGTCTTAGTTCTCCAGTCACAG +
Preference number: 6 (lower is better)
Translates to: SLAAALMSVIFTNHC*LARISTGVLVLQSQ
Trigger: CTGTGACTGGAGAACTAAGACACCCGTGCTGATTCGAGCCAGCAAGCAGTGGTTTGTAAATATCACGGACATCAAGGCTGCAGCTAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 90 bp CCGGGAATGAACTTCACCGTCTTCAACGACTCCTTAGCTGCAGCCTaGATGTCCGTGATATTTACAAACCACTGCTTGCTGGCTCGAATC +
Preference number: 6 (lower is better)
Translates to: PGMNFTVFNDSLAAA*MSVIFTNHCLLARI
Trigger: GATTCGAGCCAGCAAGCAGTGGTTTGTAAATATCACGGACATCAAGGCTGCAGCTAAGGAGTCGTTGAAGACGGTGAAGTTCATTCCCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 90 bp AAACCGGTCAAATTTCCCAAGAGAAAGCGGAGTGTGTTTCTGAGCTaGCTGATGTCATCTCTGGCAGCAGAGAGTACAGAGGGGCCAATG +
Preference number: 6 (lower is better)
Translates to: KPVKFPKRKRSVFLS*LMSSLAAESTEGPM
Trigger: CATTGGCCCCTCTGTACTCTCTGCTGCCAGAGATGACATCAGCAAGCTCAGAAACACACTCCGCTTTCTCTTGGGAAATTTGACCGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS TCA 72 bp ACCACATCTGTTCCTTCTTTAAGTACAGCCTTGTTCTaGAGTTCAGGGCCTGCGGCATCGGTGAACATTCCG +
Preference number: 6 (lower is better)
Translates to: TTSVPSLSTALF*SSGPAASVNIP
Trigger: CGGAATGTTCACCGATGCCGCAGGCCCTGAACTTCAGAACAAGGCTGTACTTAAAGAAGGAACAGATGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp CATACTTTGCCTCTGGCATATAGCAAATTGCCTGGTTaGCGGGAATTGTCCAAGGCTGGGTGGTCCAAACTA +
Preference number: 6 (lower is better)
Translates to: HTLPLAYSKLPG*RELSKAGWSKL
Trigger: TAGTTTGGACCACCCAGCCTTGGACAATTCCCGCCAACCAGGCAATTTGCTATATGCCAGAGGCAAAGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 72 bp GCAGCCTTGATGTCCGTGATATTTACAAACCACTGCTaGCTGGCTCGAATCAGCACGGGTGTCTTAGTTCTC +
Preference number: 6 (lower is better)
Translates to: AALMSVIFTNHC*LARISTGVLVL
Trigger: GAGAACTAAGACACCCGTGCTGATTCGAGCCAGCAAGCAGTGGTTTGTAAATATCACGGACATCAAGGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp AGCCATGGCAATCCCAGCCAGGCACAAAGTGTACCTTaGAACCTCTCATCATATGGAATCGATTGGCAATGT +
Preference number: 6 (lower is better)
Translates to: SHGNPSQAQSVP*NLSSYGIDWQC
Trigger: ACATTGCCAATCGATTCCATATGATGAGAGGTTCCAAGGTACACTTTGTGCCTGGCTGGGATTGCCATGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp CATCTACACCGAGCTCTGATAACACTTTTGTTTCAATaGGCAAGCCATGGCAATCCCAGCCAGGCACAAAGT +
Preference number: 6 (lower is better)
Translates to: HLHRALITLLFQ*ASHGNPSQAQS
Trigger: ACTTTGTGCCTGGCTGGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGTTATCAGAGCTCGGTGTAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp CTGGCTTTCTCCCTGATCTCCATGGCTGAAAGACTCTaGGCATCTACACCGAGCTCTGATAACACTTTTGTT +
Preference number: 6 (lower is better)
Translates to: LAFSLISMAERL*ASTPSSDNTFV
Trigger: AACAAAAGTGTTATCAGAGCTCGGTGTAGATGCCCAGAGTCTTTCAGCCATGGAGATCAGGGAGAAAGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 72 bp AAGCCATGGCAATCCCAGCCAGGCACAAAGTGTACCTaGGAACCTCTCATCATATGGAATCGATTGGCAATG +
Preference number: 6 (lower is better)
Translates to: KPWQSQPGTKCT*EPLIIWNRLAM
Trigger: CATTGCCAATCGATTCCATATGATGAGAGGTTCCAAGGTACACTTTGTGCCTGGCTGGGATTGCCATGGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS GCA 72 bp GAGACACTTTATCGGGAGTTAAAGGGTGACTACAAGTaGCACCTTCCAGATCCACACCTGAAAATGCTGCAA +
Preference number: 6 (lower is better)
Translates to: ETLYRELKGDYK*HLPDPHLKMLQ
Trigger: TTGCAGCATTTTCAGGTGTGGATCTGGAAGGTGGCACTTGTAGTCACCCTTTAACTCCCGATAAAGTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp AGCTCTGATAACACTTTTGTTTCAATGGGCAAGCCATaGCAATCCCAGCCAGGCACAAAGTGTACCTTGGAA +
Preference number: 6 (lower is better)
Translates to: SSDNTFVSMGKP*QSQPGTKCTLE
Trigger: TTCCAAGGTACACTTTGTGCCTGGCTGGGATTGCCATGGCTTGCCCATTGAAACAAAAGTGTTATCAGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp AGAGGCAGAACATTTCACCACAGCATACTTTGCCTCTaGCATATAGCAAATTGCCTGGTTGGCGGGAATTGT +
Preference number: 6 (lower is better)
Translates to: RGRTFHHSILCL*HIANCLVGGNC
Trigger: ACAATTCCCGCCAACCAGGCAATTTGCTATATGCCAGAGGCAAAGTATGCTGTGGTGAAATGTTCTGCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 72 bp AATCTTACGTATATCGACCGACTGACATGCTCAGGGTaGTATTCAAGCTCTGCTTCAGCCAACGCAGTCCTT +
Preference number: 6 (lower is better)
Translates to: NLTYIDRLTCSG*YSSSASANAVL
Trigger: AAGGACTGCGTTGGCTGAAGCAGAGCTTGAATACAACCCTGAGCATGTCAGTCGGTCGATATACGTAAGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 72 bp AACTTCACCGTCTTCAACGACTCCTTAGCTGCAGCCTaGATGTCCGTGATATTTACAAACCACTGCTTGCTG +
Preference number: 6 (lower is better)
Translates to: NFTVFNDSLAAA*MSVIFTNHCLL
Trigger: CAGCAAGCAGTGGTTTGTAAATATCACGGACATCAAGGCTGCAGCTAAGGAGTCGTTGAAGACGGTGAAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 72 bp AAATTTCCCAAGAGAAAGCGGAGTGTGTTTCTGAGCTaGCTGATGTCATCTCTGGCAGCAGAGAGTACAGAG +
Preference number: 6 (lower is better)
Translates to: KFPKRKRSVFLS*LMSSLAAESTE
Trigger: CTCTGTACTCTCTGCTGCCAGAGATGACATCAGCAAGCTCAGAAACACACTCCGCTTTCTCTTGGGAAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS TCA 72 bp AGGGTGACTACAAGTGCCACCTTCCAGATCCACACCTaGAAATGCTGCAACAACATCAAATGTTGTTTCCAA +
Preference number: 6 (lower is better)
Translates to: RVTTSATFQIHT*KCCNNIKCCFQ
Trigger: TTGGAAACAACATTTGATGTTGTTGCAGCATTTTCAGGTGTGGATCTGGAAGGTGGCACTTGTAGTCACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS TCA 72 bp TGGACAGTTCTCTGGTGTAGAAGGCTTTCAACAGCCTaGCAACTTTCCCAAAGTCATACTGTTTGTATGAGT +
Preference number: 6 (lower is better)
Translates to: WTVLWCRRLSTA*QLSQSHTVCMS
Trigger: ACTCATACAAACAGTATGACTTTGGGAAAGTTGTCAGGCTGTTGAAAGCCTTCTACACCAGAGAACTGTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS CCA 72 bp TTGGTAGAATACTCTCAGCTGCTTGGCTTCGTACTTTaGGTCAAATGTGTAATAGCAGTTATTCCAGTCTGC +
Preference number: 6 (lower is better)
Translates to: LVEYSQLLGFVL*VKCVIAVIPVC
Trigger: GCAGACTGGAATAACTGCTATTACACATTTGACCCAAAGTACGAAGCCAAGCAGCTGAGAGTATTCTACCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 90 bp TCTCATACATTTGGTAGAATACTCTCAGCTGCTTGGCTTCGTACTTaGGGTCAAATGTGTAATAGCAGTTATTCCAGTCTGCCATCACTC +
Preference number: 6 (lower is better)
Translates to: SHTFGRILSAAWLRT*GQMCNSSYSSLPSL
Trigger: GAGTGATGGCAGACTGGAATAACTGCTATTACACATTTGACCCAAAGTACGAAGCCAAGCAGCTGAGAGTATTCTACCAAATGTATGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CCA 72 bp CCTTCTCATACATTTGGTAGAATACTCTCAGCTGCTTaGCTTCGTACTTTGGGTCAAATGTGTAATAGCAGT +
Preference number: 6 (lower is better)
Translates to: PSHTFGRILSAA*LRTLGQMCNSS
Trigger: ACTGCTATTACACATTTGACCCAAAGTACGAAGCCAAGCAGCTGAGAGTATTCTACCAAATGTATGAGAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS CAA 90 bp ATATACTGGTTTGTAAGATCGATAAACCAAGCCCTTCTCATACATTaGGTAGAATACTCTCAGCTGCTTGGCTTCGTACTTTGGGTCAAA +
Preference number: 6 (lower is better)
Translates to: IYWFVRSINQALLIH*VEYSQLLGFVLWVK
Trigger: TTTGACCCAAAGTACGAAGCCAAGCAGCTGAGAGTATTCTACCAAATGTATGAGAAGGGCTTGGTTTATCGATCTTACAAACCAGTATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027921.11
ENSMUST00000110974.4
ENSMUST00000110975.8
CDS TCA 72 bp TGTTTGTATGAGTCAGTAATCTTTGTCGCAAAATCCTaGATTAAGTGCAGCATATACTGGTCTATGACATAC +
Preference number: 6 (lower is better)
Translates to: CLYESVIFVAKS*IKCSIYWSMTY
Trigger: GTATGTCATAGACCAGTATATGCTGCACTTAATTCAGGATTTTGCGACAAAGATTACTGACTCATACAAACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027921.11
CDS TCA 72 bp CGTAAGTCAACAGTGCTGGTGACAACATACGTCTGTTaGTCAAATATTCATCTTTTGTCTTATGATGAAACA +
Preference number: 6 (lower is better)
Translates to: RKSTVLVTTYVC*SNIHLLSYDET
Trigger: TGTTTCATCATAAGACAAAAGATGAATATTTGATCAACAGACGTATGTTGTCACCAGCACTGTTGACTTACG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110974.4