RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IARS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037851

Ensembl transcript IDs: ENSMUST00000047363.14, ENSMUST00000164260.8, ENSMUST00000165316.8, ENSMUST00000171510.2, ENSMUST00000172254.3

Found 262 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTAAAACCATCCTCTGGTTTGATCGATGCCTTCAGCAATGAAGTCTaGAGGAAAGGCATCCTCAAACTCGCGCTTGCTCTCGAACGGATA +
Preference number: 1 (lower is better)
Translates to: VKPSSGLIDAFSNEV*RKGILKLALALERI
Trigger: TATCCGTTCGAGAGCAAGCGCGAGTTTGAGGATGCCTTTCCTGCAGACTTCATTGCTGAAGGCATCGATCAAACCAGAGGATGGTTTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR TCA 90 bp CTCGAACCAGCAGTCAAACACCTCAGAGACGCGCCGCAATGGTGCTTTCCCGCACCTCCAAGTCTTCGCTaGCCCACAGTGGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: LEPAVKHLRDAPQWCFPAPPSLR*PTVGWG
Trigger: CCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGG...TGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTCGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR TCA 90 bp TCGAACCAGCAGTCAAACACCTCAGAGACGCGCCGCAATGGTGCTTTCCCGCAGTTCAAGCTCTGCCACTaGTCCAATGCACACTCCTCC +
Preference number: 4 (lower is better)
Translates to: SNQQSNTSETRRNGAFPQFKLCH*SNAHSS
Trigger: GGAGGAGTGTGCATTGGATCAGTGGCAGAGCTTGAA...CTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR CCA 90 bp GATGCCTTCAGCAATGAAGTCTGCAGGAAAGGCATCCTCAAACTCGCGCTTGCTTTCGCTGACCCACAGTaGGATGGGGGTGCCCCAGTA +
Preference number: 4 (lower is better)
Translates to: DAFSNEVCRKGILKLALAFADPQ*DGGAPV
Trigger: TACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAA...AGCAAGCGCGAGTTTGAGGATGCCTTTCCTGCAGACTTCATTGCTGAAGGCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCCTCCAAGTCTTCGCTaGCCCACAGTGGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVPPSLR*PTVGWG
Trigger: CCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp GCCTTCAGCAATGAAGTCTGCAGGAAAGGCATCCTCAAACTCGCGCTTGCTCTCACAGTGGGATGGGGGTaGCCCAGTATCTGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: AFSNEVCRKGILKLALALTVGWG*PSICFW
Trigger: CCAGAAACAGATACTGGGGCACCCCCATCCCACTGT...GAGAGCAAGCGCGAGTTTGAGGATGCCTTTCCTGCAGACTTCATTGCTGAAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGAGTGTGCTTCAAACTaGGCGGTCCCTCCCGTGGCC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVECASN*AVPPVA
Trigger: GGCCACGGGAGGGACCGCGCAGTTTGAAGCACACTC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGCGCGGTCCCTCCCGTaGCCTGGTCAAAGGTGTACA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVARSLP*PGQRCT
Trigger: TGTACACCTTTGACCAGGCCACGGGAGGGACCGCGC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp GGCATCCTCAAACTCGCGCTTGCTCTCGAACGGATAATGGACCTGGGCATAGGGCTCTCTGTGGAGATCTaGGATTTTTGTTCCCGACAG +
Preference number: 4 (lower is better)
Translates to: GILKLALALERIMDLGIGLSVEI*DFCSRQ
Trigger: CTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAG...CCCTATGCCCAGGTCCATTATCCGTTCGAGAGCAAGCGCGAGTTTGAGGATGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTGCAGGTTGAGGTACTaGCACAGCAGGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVCRLRY*HSRVLG
Trigger: CCCCAGCACCCTGCTGTGTCAGTACCTCAACCTGCA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TTCCACTCTCGAACCAGCAGTCAAACACCTCAGAGACGCGCCGCAATGGTGCTTTCTGTTTCTGGAAATTaGCCAGTCACGGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: FHSRTSSQTPQRRAAMVLSVSGN*PVTGLL
Trigger: AAGGAGGCCCGTGACTGGGCAATTTCCAGAAACAGA...AAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTCGAGAGTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAGACGGGGATGCCCCTaGAGTCACACACAGCGTCCT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVRRGCP*SHTQRP
Trigger: AGGACGCTGTGTGTGACTGCAGGGGCATCCCCGTCT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTCGCTGACCCACAGTaGGATGGGGGTGCCCCAGTA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVFADPQ*DGGAPV
Trigger: TACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCGGTGGAGAAGGGCATaGCCTTCACGCCTCTGTACA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVRWRRA*PSRLCT
Trigger: TGTACAGAGGCGTGAAGGTCATGCCCTTCTCCACCG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCCTCCAAGTCTTCGCTaGCCCACAGTGGGATGGGGG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMPPSLR*PTVGWG
Trigger: CCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCAAGGAGCGACTGCATaGAGGACAGAACCCAGCGGT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVQGATA*RTEPSG
Trigger: ACCGCTGGGTTCTGTCCTTCATGCAGTCGCTCCTTG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGATGCTCCCGCTCTTCTaGAACCGCTCCAGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVMLPLF*NRSSSS
Trigger: TGAGGAGCTGGAGCGGTTTCAGAAGAGCGGGAGCAT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGAGTGTGCTTCAAACTaGGCGGTCCCTCCCGTGGCC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMECASN*AVPPVA
Trigger: GGCCACGGGAGGGACCGCGCAGTTTGAAGCACACTC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp CAAACTCGCGCTTGCTCTCGAACGGATAATGGACCTGGGCATAGGGCATACTTCCCCAGTATCTGTTTCTaGAAATTGCCCAGTCACGGG +
Preference number: 4 (lower is better)
Translates to: QTRACSRTDNGPGHRAYFPSICF*KLPSHG
Trigger: CCCGTGACTGGGCAATTTCCAGAAACAGATACTGGG...GAAGTATGCCCTATGCCCAGGTCCATTATCCGTTCGAGAGCAAGCGCGAGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTTCCCGCAGCGGGATaGGATGGTCAGGTGGTCGAT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVFPAAG*DGQVVD
Trigger: ATCGACCACCTGACCATCCCATCCCGCTGCGGGAAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGTCCAAAGAGCGCTGTaGCTAGCACCAGCAGGGTGT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVVQRAL*LAPAGC
Trigger: ACACCCTGCTGGTGCTAGCCACAGCGCTCTTTGGAC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGTCCCTCCCGTGGCCTaGTCAAAGGTGTACATGAGG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVVPPVA*SKVYMR
Trigger: CCTCATGTACACCTTTGACCAGGCCACGGGAGGGAC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTCCACAGGTAAGCCGTaGCAGTCCCACCCGAATCTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVSTGKP*QSHPNL
Trigger: AAGATTCGGGTGGGACTGTCACGGCTTACCTGTGGA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCATCCTCCGGGCCTTTaGTGCCCAGTGTCTTATCGA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVHPPGL*CPVSYR
Trigger: TCGATAAGACACTGGGCATCAAAGGCCCGGAGGATG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAATGAGGGGCGTGTCTaGCCTCCAGCAGAAAGGGTA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVNEGRV*PPAERV
Trigger: TACCCTTTCTGCTGGAGGTCAGACACGCCCCTCATT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGGAGCAGCACATCTTTaGGGACATCCCGCACACCTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVGAAHL*GHPAHL
Trigger: AAGGTGTGCGGGATGTCCTCAAAGATGTGCTGCTCC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGACAGCGTCCTCCCACTaGGGCTCAGCAAGTCAGTTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVTASSH*GSASQF
Trigger: AAACTGACTTGCTGAGCCTCAGTGGGAGGACGCTGT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTGCAGGTTGAGGTACTaGCACAGCAGGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMCRLRY*HSRVLG
Trigger: CCCCAGCACCCTGCTGTGTCAGTACCTCAACCTGCA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGACAGTGGGATGGGGGTaGCCCAGTATCTGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVTVGWG*PSICFW
Trigger: CCAGAAACAGATACTGGGGCACCCCCATCCCACTGT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAGACGGGGATGCCCCTaGAGTCACACACAGCGTCCT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMRRGCP*SHTQRP
Trigger: AGGACGCTGTGTGTGACTGCAGGGGCATCCCCGTCT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGACAGCCTTAGCCTCCTaGTCCTCAGTCCGAACACCT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVTALAS*SSVRTP
Trigger: AGGTGTTCGGACTGAGGAGCAGGAGGCTAAGGCTGT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTCGAAGTTGGAGAGTaGAGTGCCACACGCGGTGGA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVFEVGE*SATRGG
Trigger: TCCACCGCGTGTGGCACTCCACTCTCCAACTTCGAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTCGCTGACCCACAGTaGGATGGGGGTGCCCCAGTA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMFADPQ*DGGAPV
Trigger: TACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCGCAGCGGGATGGGATaGTCAGGTGGTCGATGCTCT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMRSGMG*SGGRCS
Trigger: AGAGCATCGACCACCTGACCATCCCATCCCGCTGCG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTGCACAAGCCCTTGGTaGGTGAGGCCGTTCTGTCCG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMCTSPW*VRPFCP
Trigger: CGGACAGAACGGCCTCACCCACCAAGGGCTTGTGCA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCGGTGGAGAAGGGCATaGCCTTCACGCCTCTGTACA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMRWRRA*PSRLCT
Trigger: TGTACAGAGGCGTGAAGGTCATGCCCTTCTCCACCG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGATGCTCCCGCTCTTCTaGAACCGCTCCAGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMMLPLF*NRSSSS
Trigger: TGAGGAGCTGGAGCGGTTTCAGAAGAGCGGGAGCAT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGCCAGCAGCCGGCCCTaGTCCTTCAACATCCTAATG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMASSRP*SFNILM
Trigger: CATTAGGATGTTGAAGGAGCAGGGCCGGCTGCTGGC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAAGGGGCCATCAGTCTaGACAGAGAAAGCAGGACAC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVKGPSV*TEKAGH
Trigger: GTGTCCTGCTTTCTCTGTGCAGACTGATGGCCCCTT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGACACTCTTGTGGCTCTaGGTTCAGGAGCTGCAGGTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVTLLWL*VQELQV
Trigger: AACCTGCAGCTCCTGAACGCAGAGCCACAAGAGTGT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTCCGAACACCTTGGCTaGTTCATGCACAAGCCCTTG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVSEHLG*FMHKPL
Trigger: CAAGGGCTTGTGCATGAAGCAGCCAAGGTGTTCGGA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp GGCATCCTCAAACTCGCGCTTGCTCTCGAACGGATAATGGACCTGGGCATAGGGTCGATGCTCTCTCTGTaGAGATCTGAGATTTTTGTT +
Preference number: 4 (lower is better)
Translates to: GILKLALALERIMDLGIGSMLSL*RSEIFV
Trigger: AACAAAAATCTCAGATCTCCACAGAGAGAGCATCGA...CCCTATGCCCAGGTCCATTATCCGTTCGAGAGCAAGCGCGAGTTTGAGGATGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTTCCCGCAGCGGGATaGGATGGTCAGGTGGTCGAT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMFPAAG*DGQVVD
Trigger: ATCGACCACCTGACCATCCCATCCCGCTGCGGGAAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGTCCCTCCCGTGGCCTaGTCAAAGGTGTACATGAGG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMVPPVA*SKVYMR
Trigger: CCTCATGTACACCTTTGACCAGGCCACGGGAGGGAC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTCCACAGGTAAGCCGTaGCAGTCCCACCCGAATCTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMSTGKP*QSHPNL
Trigger: AAGATTCGGGTGGGACTGTCACGGCTTACCTGTGGA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCATCCTCCGGGCCTTTaGTGCCCAGTGTCTTATCGA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMHPPGL*CPVSYR
Trigger: TCGATAAGACACTGGGCATCAAAGGCCCGGAGGATG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCTGGGTCTTGGTGGATaGCCACAATTTCCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVLGLGG*PQFPSE
Trigger: CTCTGAAGGAAATTGTGGTCATCCACCAAGACCCAG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGGTGCACAACGCCTGTaGCTTCTTCATCCTTCACAT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVGAQRL*LLHPSH
Trigger: ATGTGAAGGATGAAGAAGGCACAGGCGTTGTGCACC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGACAGTGGGATGGGGGTaGCCCAGTATCTGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMTVGWG*PSICFW
Trigger: CCAGAAACAGATACTGGGGCACCCCCATCCCACTGT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGCTCCAGCTCCTCATTaGTCAGCCGCTTTATGGCCA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMAPAPH*SAALWP
Trigger: TGGCCATAAAGCGGCTGAGCAATGAGGAGCTGGAGC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCGAATGTCTTCCTCATaGAGTTCGTGGCCTTCCACA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVRMSSS*SSWPST
Trigger: TGTGGAAGGCCACGAACTGCATGAGGAAGACATTCG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAGCAACACTCCACCTTaGTCGGTGCCATTTGCACAA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVSNTPP*SVPFAQ
Trigger: TTGTGCAAATGGCACCGAGCAAGGTGGAGTGTTGCT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGACAGCCTTAGCCTCCTaGTCCTCAGTCCGAACACCT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMTALAS*SSVRTP
Trigger: AGGTGTTCGGACTGAGGAGCAGGAGGCTAAGGCTGT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTGCAATCCCCATTTTaGCCACATCCTCCGGGCCTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLQSPF*PHPPGL
Trigger: AAGGCCCGGAGGATGTGGCCAAAATGGGGATTGCAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTCGAAGTTGGAGAGTaGAGTGCCACACGCGGTGGA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMFEVGE*SATRGG
Trigger: TCCACCGCGTGTGGCACTCCACTCTCCAACTTCGAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTCCTCATGCAGTTCGTaGCCTTCCACAACAATGCTC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVSSCSS*PSTTML
Trigger: GAGCATTGTTGTGGAAGGCCACGAACTGCATGAGGA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTCTGTGAAGCAGCCTaGAGCATCCACAGGACAAAC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLCEAA*SIHRTN
Trigger: GTTTGTCCTGTGGATGCTTCAGGCTGCTTCACAGAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCTCTCTGTGGAGATCTaGGATTTTTGTTCCCGACAG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVLSVEI*DFCSRQ
Trigger: CTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAACCATCCTCTGGTTTaGTCGATGCCTTCAGCAATG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVNHPLV*SMPSAM
Trigger: CATTGCTGAAGGCATCGATCAAACCAGAGGATGGTT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGAGAAAGCAGGACACTaGACAGTGTCTCCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMEKAGH*TVSPEP
Trigger: TGGCTCTGGAGACACTGTTCAGTGTCCTGCTTTCTC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGGTCAAAGGTGTACATaGGGCGAATGTCTTCCTCAT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVGQRCT*GECLPH
Trigger: ATGAGGAAGACATTCGCCTCATGTACACCTTTGACC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAAGAGAACTAGAGCCTaGGCATCAGAGTGTGCTTCA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVKRTRA*ASECAS
Trigger: TGAAGCACACTCTGATGCTCAGGCTCTAGTTCTCTT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCTGCTTGTTGTACTCTaGAATCCCCATTTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVLLVVL*NPHFGH
Trigger: GTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGACGATTGCTCGGCACTaGTTGTTGTACTCTGCAATC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVTIARH*LLYSAI
Trigger: GATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCCTTTGTCATACAGCTaGTTGAAGACCCACCAGACT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVPLSYS*LKTHQT
Trigger: AGTCTGGTGGGTCTTCAAGCAGCTGTATGACAAAGG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGAAGCGCAGGTTTTCTaGTCTTACCACAGGGGAATT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVEAQVF*SYHRGI
Trigger: AATTCCCCTGTGGTAAGAGCAGAAAACCTGCGCTTC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAAGCCAAGGAGCGACTaGATGAAGGACAGAACCCAG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMKPRSD*MKDRTQ
Trigger: CTGGGTTCTGTCCTTCATGCAGTCGCTCCTTGGCTT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAAGGGGCCATCAGTCTaGACAGAGAAAGCAGGACAC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMKGPSV*TEKAGH
Trigger: GTGTCCTGCTTTCTCTGTGCAGACTGATGGCCCCTT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGGCCTTCCACAACAATaGTCCCGCTCTTCTGAAACC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMGLPQQ*SRSSET
Trigger: GGTTTCAGAAGAGCGGGAGCATTGTTGTGGAAGGCC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGACACTCTTGTGGCTCTaGGTTCAGGAGCTGCAGGTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMTLLWL*VQELQV
Trigger: AACCTGCAGCTCCTGAACGCAGAGCCACAAGAGTGT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTTCAAGCAGGAGGGTaGCCACAGTTCCTGTTAAAC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVFQAGG*PQFLLN
Trigger: GTTTAACAGGAACTGTGGGCACCCTCCTGCTTGAAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTCCGAACACCTTGGCTaGTTCATGCACAAGCCCTTG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMSEHLG*FMHKPL
Trigger: CAAGGGCTTGTGCATGAAGCAGCCAAGGTGTTCGGA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCACATTCTTGAAAGGTaGCTGTCCAAAGAGCGCTGT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVHILER*LSKERC
Trigger: ACAGCGCTCTTTGGACAGCCACCTTTCAAGAATGTG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGCTTCTGGGTCTTGGTaGATGACCACAATTTCCTTC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVASGSW*MTTISF
Trigger: GAAGGAAATTGTGGTCATCCACCAAGACCCAGAAGC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAGAGCTTCTGGGTCTTaGTGGATGACCACAATTTCC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVRASGS*WMTTIS
Trigger: GGAAATTGTGGTCATCCACCAAGACCCAGAAGCTCT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTGGCTTCCGTTAAGATaGATAATTTTCCCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVWLPLR*IIFPWP
Trigger: TGGCCAGGGGAAAATTATTCATCTTAACGGAAGCCA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCACCATACTTATCGATaGTGGAAACTGGATCTGGGT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVHHTYR*WKLDLG
Trigger: ACCCAGATCCAGTTTCCATCATCGATAAGTATGGTG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTGGGTCTTGGTGGATaGCCACAATTTCCTTCAGAG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLGLGG*PQFPSE
Trigger: CTCTGAAGGAAATTGTGGTCATCCACCAAGACCCAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTGACTGGTCAGGTGTaGCATCTAAGAGAACTAGAG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVLTGQV*HLRELE
Trigger: CTCTAGTTCTCTTAGATGTCACACCTGACCAGTCAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTCTGTTTCTGGAAATTaGCCAGTCACGGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMSVSGN*PVTGLL
Trigger: AAGGAGGCCCGTGACTGGGCAATTTCCAGAAACAGA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCGAATGTCTTCCTCATaGAGTTCGTGGCCTTCCACA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMRMSSS*SSWPST
Trigger: TGTGGAAGGCCACGAACTGCATGAGGAAGACATTCG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCCCAGTATCTGTTTCTaGAAATTGCCCAGTCACGGG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMPSICF*KLPSHG
Trigger: CCCGTGACTGGGCAATTTCCAGAAACAGATACTGGG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTCCTCATGCAGTTCGTaGCCTTCCACAACAATGCTC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMSSCSS*PSTTML
Trigger: GAGCATTGTTGTGGAAGGCCACGAACTGCATGAGGA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTTTGGCCTGAGTTTTaGCTGTTTGAGGCATTCCTG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLWPEF*LFEAFL
Trigger: CAGGAATGCCTCAAACAGTCAAAACTCAGGCCAAAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGACCAGACTGATTCCATaGACTGTGGGTATAGTGTTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVTRLIP*TVGIVF
Trigger: AAACACTATACCCACAGTTCATGGAATCAGTCTGGT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGACTGTATTTCTGGATTaGCGCATAGTGCAAGGTTAC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVTVFLD*RIVQGY
Trigger: GTAACCTTGCACTATGCGTCAATCCAGAAATACAGT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTCTCTGTGGAGATCTaGGATTTTTGTTCCCGACAG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLSVEI*DFCSRQ
Trigger: CTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGAATATCTACAAACTTaGCCAGGCGAGGTACCACAG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMEYLQT*PGEVPQ
Trigger: CTGTGGTACCTCGCCTGGTCAAGTTTGTAGATATTC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAAGAGAACTAGAGCCTaGGCATCAGAGTGTGCTTCA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMKRTRA*ASECAS
Trigger: TGAAGCACACTCTGATGCTCAGGCTCTAGTTCTCTT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTCACCGTGGAAGACTaGCAGCTTTGCATTTTTAAC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVFTVED*QLCIFN
Trigger: GTTAAAAATGCAAAGCTGTCAGTCTTCCACGGTGAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTGCTTGTTGTACTCTaGAATCCCCATTTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLLVVL*NPHFGH
Trigger: GTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGACGATTGCTCGGCACTaGTTGTTGTACTCTGCAATC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMTIARH*LLYSAI
Trigger: GATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCCTTTGTCATACAGCTaGTTGAAGACCCACCAGACT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMPLSYS*LKTHQT
Trigger: AGTCTGGTGGGTCTTCAAGCAGCTGTATGACAAAGG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTGCTCGGTGCCATTTaGACAAATGTTAAGGTTCAC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVLLGAI*TNVKVH
Trigger: GTGAACCTTAACATTTGTGCAAATGGCACCGAGCAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTTCAAGCAGGAGGGTaGCCACAGTTCCTGTTAAAC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMFQAGG*PQFLLN
Trigger: GTTTAACAGGAACTGTGGGCACCCTCCTGCTTGAAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGTAGAGTCCAAGGAGTaGTTGTCCAAGCAACTAAGG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMVESKE*LSKQLR
Trigger: CCTTAGTTGCTTGGACAACCACTCCTTGGACTCTAC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGATAGTGCAAGGTTACTaGGTAGAGTCCAAGGAGTGG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMIVQGY*VESKEW
Trigger: CCACTCCTTGGACTCTACCCAGTAACCTTGCACTAT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCACATTCTTGAAAGGTaGCTGTCCAAAGAGCGCTGT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMHILER*LSKERC
Trigger: ACAGCGCTCTTTGGACAGCCACCTTTCAAGAATGTG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGATGGAAACTGGATCTaGGTAGTTCTTTTTCCGCTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVDGNWI*VVLFPL
Trigger: AAGCGGAAAAAGAACTACCCAGATCCAGTTTCCATC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAGCAGCTTTAGATTCTaGTACATCAGCTCAGTCAGA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVSSFRF*YISSVR
Trigger: TCTGACTGAGCTGATGTACCAGAATCTAAAGCTGCT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGCTTCTGGGTCTTGGTaGATGACCACAATTTCCTTC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMASGSW*MTTISF
Trigger: GAAGGAAATTGTGGTCATCCACCAAGACCCAGAAGC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAGAGCTTCTGGGTCTTaGTGGATGACCACAATTTCC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMRASGS*WMTTIS
Trigger: GGAAATTGTGGTCATCCACCAAGACCCAGAAGCTCT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTGTTGGAACTGGATATaGCTTCAAGGGAGCTTTGAT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVCWNWI*LQGSFD
Trigger: ATCAAAGCTCCCTTGAAGCCATATCCAGTTCCAACA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGCCATCTGCAGTTGTTaGCAAGACAGAAACATATAC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVAICSC*QDRNIY
Trigger: GTATATGTTTCTGTCTTGCCAACAACTGCAGATGGC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCTTCAGCAGGAAAACTaGTGTTTTCTGGAACTTGTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVLQQEN*CFLELV
Trigger: AACAAGTTCCAGAAAACATCAGTTTTCCTGCTGAAG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTGGCTTCCGTTAAGATaGATAATTTTCCCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMWLPLR*IIFPWP
Trigger: TGGCCAGGGGAAAATTATTCATCTTAACGGAAGCCA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGGGACTGAGTCTTTCTaGATAATGTTGAAGTCCATA +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVGTESF*IMLKSI
Trigger: TATGGACTTCAACATTATTCAGAAAGACTCAGTCCC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAGGACAAACAGGGACTaGGTCTTTCTGAATAATGTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVRTNRD*VFLNNV
Trigger: AACATTATTCAGAAAGACTCAGTCCCTGTTTGTCCT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCACCATACTTATCGATaGTGGAAACTGGATCTGGGT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMHHTYR*WKLDLG
Trigger: ACCCAGATCCAGTTTCCATCATCGATAAGTATGGTG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTGACTGGTCAGGTGTaGCATCTAAGAGAACTAGAG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLTGQV*HLRELE
Trigger: CTCTAGTTCTCTTAGATGTCACACCTGACCAGTCAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGTAATTTCTTGTGTTTaGGTCTCATTCAGGAACAGC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVVISCV*VSFRNS
Trigger: GCTGTTCCTGAATGAGACTCAAACACAAGAAATTAC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGTATCTCATCACGATTaGTCGGCACTGCTTGTTGTA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMVSHHD*SALLVV
Trigger: TACAACAAGCAGTGCCGAGCAATCGTGATGAGATAC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTCGATGCTCTCTCTGTaGAGATCTGAGATTTTTGTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVSMLSL*RSEIFV
Trigger: AACAAAAATCTCAGATCTCCACAGAGAGAGCATCGA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGACCAGACTGATTCCATaGACTGTGGGTATAGTGTTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMTRLIP*TVGIVF
Trigger: AAACACTATACCCACAGTTCATGGAATCAGTCTGGT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGACTGTATTTCTGGATTaGCGCATAGTGCAAGGTTAC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMTVFLD*RIVQGY
Trigger: GTAACCTTGCACTATGCGTCAATCCAGAAATACAGT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCCCTGGCCACATCTTTaGTCTTCACATACTGTATTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMPWPHL*SSHTVF
Trigger: AAATACAGTATGTGAAGATCAAAGATGTGGCCAGGG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTCACAATCACATTCTTaGAAGGTGGCTGTCCAAAGA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMSQSHS*KVAVQR
Trigger: TCTTTGGACAGCCACCTTTCAAGAATGTGATTGTGA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCAGTGTGGCTTTCAATaGCATTATTCAAGTATCTTC +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVQCGFQ*HYSSIF
Trigger: GAAGATACTTGAATAATGTCATTGAAAGCCACACTG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTCACCGTGGAAGACTaGCAGCTTTGCATTTTTAAC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMFTVED*QLCIFN
Trigger: GTTAAAAATGCAAAGCTGTCAGTCTTCCACGGTGAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR GCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTGCTCGGTGCCATTTaGACAAATGTTAAGGTTCAC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLLGAI*TNVKVH
Trigger: GTGAACCTTAACATTTGTGCAAATGGCACCGAGCAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGATCGATGATGGAAACTaGATCTGGGTAGTTCTTTTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVIDDGN*IWVVLF
Trigger: AAAAAGAACTACCCAGATCCAGTTTCCATCATCGAT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCAGAGGATACTTTATTaGAATAGTTTTTCGGTCTCG +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVQRILY*NSFSVS
Trigger: CGAGACCGAAAAACTATTCCAATAAAGTATCCTCTG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTCTTTCGAAGCTTCTaGATGCGATTGATGACTTCC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMFFRSF*MRLMTS
Trigger: GGAAGTCATCAATCGCATCCAGAAGCTTCGAAAGAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTGTTATTTCATCCGTTaGAACCAGATTGCACTTCTT +
Preference number: 4 (lower is better)
Translates to: RETERERERERHRECECVCYFIR*NQIALL
Trigger: AAGAAGTGCAATCTGGTTCCAACGGATGAAATAACA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGCCATCTGCAGTTGTTaGCAAGACAGAAACATATAC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMAICSC*QDRNIY
Trigger: GTATATGTTTCTGTCTTGCCAACAACTGCAGATGGC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTTCAGCAGGAAAACTaGTGTTTTCTGGAACTTGTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLQQEN*CFLELV
Trigger: AACAAGTTCCAGAAAACATCAGTTTTCCTGCTGAAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGAATGTTACAAATACTaGGGGATCCTGAACATCCTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMECYKY*GILNIL
Trigger: AAGGATGTTCAGGATCCCTCAGTATTTGTAACATTC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGGGACTGAGTCTTTCTaGATAATGTTGAAGTCCATA +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMGTESF*IMLKSI
Trigger: TATGGACTTCAACATTATTCAGAAAGACTCAGTCCC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAGGACAAACAGGGACTaGGTCTTTCTGAATAATGTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMRTNRD*VFLNNV
Trigger: AACATTATTCAGAAAGACTCAGTCCCTGTTTGTCCT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR TCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCATTTAATTCCTCAATaGTATACTTCTCCAAGGACC +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMHLIPQ*YTSPRT
Trigger: GGTCCTTGGAGAAGTATATCATTGAGGAATTAAATG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCAGAGGATACTTTATTaGAATAGTTTTTCGGTCTCG +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMQRILY*NSFSVS
Trigger: CGAGACCGAAAAACTATTCCAATAAAGTATCCTCTG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CCA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTGTTATTTCATCCGTTaGAACCAGATTGCACTTCTT +
Preference number: 4 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMCYFIR*NQIALL
Trigger: AAGAAGTGCAATCTGGTTCCAACGGATGAAATAACA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS GCA 90 bp ACTCTCGAACCAGCAGTCAAACACCTCAGAGACGCGCCGCAATGGTaGTTTCCCGCAGCGGGATGGGATGGTCAGGTGGTCGATGCTCTC +
Preference number: 5 (lower is better)
Translates to: TLEPAVKHLRDAPQW*FPAAGWDGQVVDAL
Trigger: GAGAGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTCGAGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 90 bp TCCACTCTCGAACCAGCAGTCAAACACCTCAGAGACGCGCCGCAATaGTGCTTTCCCGCAGCGGGATGGGATGGTCAGGTGGTCGATGCT +
Preference number: 5 (lower is better)
Translates to: STLEPAVKHLRDAPQ*CFPAAGWDGQVVDA
Trigger: AGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTCGAGAGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 90 bp TCAGTCCGAACACCTTGGCTGCTTCATGCACAAGCCCTTGGTGGGTaGGGCCGTTCTGTCCGAGTGGGTTTTCAAGCAGGAGGGTGCCCA +
Preference number: 5 (lower is better)
Translates to: SVRTPWLLHAQALGG*GRSVRVGFQAGGCP
Trigger: TGGGCACCCTCCTGCTTGAAAACCCACTCGGACAGAACGGCCTCACCCACCAAGGGCTTGTGCATGAAGCAGCCAAGGTGTTCGGACTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 90 bp CTGCTCCTCAGTCCGAACACCTTGGCTGCTTCATGCACAAGCCCTTaGTGGGTGAGGCCGTTCTGTCCGAGTGGGTTTTCAAGCAGGAGG +
Preference number: 5 (lower is better)
Translates to: LLLSPNTLAASCTSP*WVRPFCPSGFSSRR
Trigger: CCTCCTGCTTGAAAACCCACTCGGACAGAACGGCCTCACCCACCAAGGGCTTGTGCATGAAGCAGCCAAGGTGTTCGGACTGAGGAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 90 bp ACGCGCCGCAATGGTGCTTTCCCGCAGCGGGATGGGATGGTCAGGTaGTCGATGCTCTCTCTGTGGAGATCTGAGATTTTTGTTCCCGAC +
Preference number: 5 (lower is better)
Translates to: TRRNGAFPQRDGMVR*SMLSLWRSEIFVPD
Trigger: GTCGGGAACAAAAATCTCAGATCTCCACAGAGAGAGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 90 bp ATTCGAAGTTGGAGAGTGGAGTGCCACACGCGGTGGAGAAGGGCATaGCCTTCACGCCTCTGTACACGAGGCCTTTGTCATACAGCTGCT +
Preference number: 5 (lower is better)
Translates to: IRSWRVECHTRWRRA*PSRLCTRGLCHTAA
Trigger: AGCAGCTGTATGACAAAGGCCTCGTGTACAGAGGCGTGAAGGTCATGCCCTTCTCCACCGCGTGTGGCACTCCACTCTCCAACTTCGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 90 bp CTTCAAACTGCGCGGTCCCTCCCGTGGCCTGGTCAAAGGTGTACATaGGGCGAATGTCTTCCTCATGCAGTTCGTGGCCTTCCACAACAA +
Preference number: 5 (lower is better)
Translates to: LQTARSLPWPGQRCT*GECLPHAVRGLPQQ
Trigger: TTGTTGTGGAAGGCCACGAACTGCATGAGGAAGACATTCGCCTCATGTACACCTTTGACCAGGCCACGGGAGGGACCGCGCAGTTTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 90 bp CCACTGATCCAATGCACACTCCTCCAAGTCTTCGCTGACCCACAGTaGGATGGGGGTGCCCCAGTATCTGTTTCTGGAAATTGCCCAGTC +
Preference number: 5 (lower is better)
Translates to: PLIQCTLLQVFADPQ*DGGAPVSVSGNCPV
Trigger: GACTGGGCAATTTCCAGAAACAGATACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGGAGTGTGCATTGGATCAGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR CAA 90 bp GGCATCCTCAAACTCGCGCTTGCTCTCGAACGGATAATGGACCTGGGCATAGGGATCTGTTTCTGGAAATaGCCCAGTCACGGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: GILKLALALERIMDLGIGICFWK*PSHGPP
Trigger: AGGAGGCCCGTGACTGGGCAATTTCCAGAAACAGAT...CCCTATGCCCAGGTCCATTATCCGTTCGAGAGCAAGCGCGAGTTTGAGGATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS TCA 90 bp TCAAGCTCTGCCACTGATCCAATGCACACTCCTCCAAGTCTTCGCTaGCCCACAGTGGGATGGGGGTGCCCCAGTATCTGTTTCTGGAAA +
Preference number: 5 (lower is better)
Translates to: SSSATDPMHTPPSLR*PTVGWGCPSICFWK
Trigger: TTTCCAGAAACAGATACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGGAGTGTGCATTGGATCAGTGGCAGAGCTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS GCA 90 bp AGCGGAGTATCTCATCACGATTGCTCGGCACTGCTTGTTGTACTCTaGAATCCCCATTTTGGCCACATCCTCCGGGCCTTTGATGCCCAG +
Preference number: 5 (lower is better)
Translates to: SGVSHHDCSALLVVL*NPHFGHILRAFDAQ
Trigger: CTGGGCATCAAAGGCCCGGAGGATGTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGATACTCCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGCCATCATCACCGCTTaGAAGGCCCCCTTCAGGCGC +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVAIITA*KAPFRR
Trigger: GCGCCTGAAGGGGGCCTTCAAAGCGGTGATGATGGC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS GCA 90 bp GTAGACTTCCACTCAGCGGAGTATCTCATCACGATTGCTCGGCACTaGTTGTTGTACTCTGCAATCCCCATTTTGGCCACATCCTCCGGG +
Preference number: 5 (lower is better)
Translates to: VDFHSAEYLITIARH*LLYSAIPILATSSG
Trigger: CCCGGAGGATGTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGATACTCCGCTGAGTGGAAGTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp CAGCAGTCAAACACCTCAGAGACGCGCCGCAATGGTGCTTTCCCGCAGCGGGATGGAGATCTGAGATTTTaGTTCCCGACAGTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: QQSNTSETRRNGAFPQRDGDLRF*FPTVLQ
Trigger: TTGAAGAACTGTCGGGAACAAAAATCTCAGATCTCC...ATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCGCTCCAGCTCCTCATaGCTCAGCCGCTTTATGGCC +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVRSSSS*LSRFMA
Trigger: GGCCATAAAGCGGCTGAGCAATGAGGAGCTGGAGCG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGGGAGCAGCACATCTTaGAGGACATCCCGCACACCT +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVGSSTS*RTSRTP
Trigger: AGGTGTGCGGGATGTCCTCAAAGATGTGCTGCTCCC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGCCATCATCACCGCTTaGAAGGCCCCCTTCAGGCGC +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMAIITA*KAPFRR
Trigger: GCGCCTGAAGGGGGCCTTCAAAGCGGTGATGATGGC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS TCA 90 bp TGTTGTACTCTGCAATCCCCATTTTGGCCACATCCTCCGGGCCTTTaGTGCCCAGTGTCTTATCGATTTCGTACTCCACAGGTAAGCCGT +
Preference number: 5 (lower is better)
Translates to: CCTLQSPFWPHPPGL*CPVSYRFRTPQVSR
Trigger: ACGGCTTACCTGTGGAGTACGAAATCGATAAGACACTGGGCATCAAAGGCCCGGAGGATGTGGCCAAAATGGGGATTGCAGAGTACAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 90 bp ATCACCGCTTTGAAGGCCCCCTTCAGGCGCTTCCCAAGGACCATGTaGTCTGGTTCAGCCCTTAGTCGGATACCGTACTTGTTTTTATCA +
Preference number: 5 (lower is better)
Translates to: ITALKAPFRRFPRTM*SGSALSRIPYLFLS
Trigger: TGATAAAAACAAGTACGGTATCCGACTAAGGGCTGAACCAGATCACATGGTCCTTGGGAAGCGCCTGAAGGGGGCCTTCAAAGCGGTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 90 bp ATCCTGAACATCCTTGTAATTCTGGTTAGATTCGAAGTTGGAGAGTaGAGTGCCACACGCGGTGGAGAAGGGCATGACCTTCACGCCTCT +
Preference number: 5 (lower is better)
Translates to: ILNILVILVRFEVGE*SATRGGEGHDLHAS
Trigger: AGAGGCGTGAAGGTCATGCCCTTCTCCACCGCGTGTGGCACTCCACTCTCCAACTTCGAATCTAACCAGAATTACAAGGATGTTCAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 90 bp GCAGTCACACACAGCGTCCTCCCACTGAGGCTCAGCAAGTCAGTTTaGTTCTGTATTTCTGTTTCACCGTGGAAGACTGACAGCTTTGCA +
Preference number: 5 (lower is better)
Translates to: AVTHSVLPLRLSKSV*FCISVSPWKTDSFA
Trigger: TGCAAAGCTGTCAGTCTTCCACGGTGAAACAGAAATACAGAACCAAACTGACTTGCTGAGCCTCAGTGGGAGGACGCTGTGTGTGACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGACATCCTCCGGGCCTTaGATGCCCAGTGTCTTATCG +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVTSSGP*MPSVLS
Trigger: CGATAAGACACTGGGCATCAAAGGCCCGGAGGATGT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCGCACACCTTCCTCCTaGAAGCGCAGGTTTTCTGCT +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVRTPSS*KRRFSA
Trigger: AGCAGAAAACCTGCGCTTCAAGGAGGAAGGTGTGCG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGATGCTGAGTGTGTCCTaGTCCCGGAGAGAAGCAGGA +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVMLSVS*SRREAG
Trigger: TCCTGCTTCTCTCCGGGACAAGGACACACTCAGCAT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCGCTCCAGCTCCTCATaGCTCAGCCGCTTTATGGCC +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMRSSSS*LSRFMA
Trigger: GGCCATAAAGCGGCTGAGCAATGAGGAGCTGGAGCG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCTCAGTCCGAACACCTaGGCTGCTTCATGCACAAGC +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVLSPNT*AASCTS
Trigger: GCTTGTGCATGAAGCAGCCAAGGTGTTCGGACTGAG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS GCA 90 bp TCTGGTAACAGTAGACTTCCACTCAGCGGAGTATCTCATCACGATTaGTCGGCACTGCTTGTTGTACTCTGCAATCCCCATTTTGGCCAC +
Preference number: 5 (lower is better)
Translates to: SGNSRLPLSGVSHHD*SALLVVLCNPHFGH
Trigger: GTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGATACTCCGCTGAGTGGAAGTCTACTGTTACCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGATTGCTCGGCACTGCTaGTTGTACTCTGCAATCCCC +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVIARHC*LYSAIP
Trigger: GGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAAT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGGGAGCAGCACATCTTaGAGGACATCCCGCACACCT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMGSSTS*RTSRTP
Trigger: AGGTGTGCGGGATGTCCTCAAAGATGTGCTGCTCCC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS GCA 90 bp GACAGAACCCAGCGGTCGGTGATGTTAGGGCTTTCTCTGACTGTATaGTCGTTGTATAGGAACTTCACTTCTTCTTCCTTGTGGAGCCTA +
Preference number: 5 (lower is better)
Translates to: DRTQRSVMLGLSLTV*SLYRNFTSSSLWSL
Trigger: TAGGCTCCACAAGGAAGAAGAAGTGAAGTTCCTATACAACGAGCATACAGTCAGAGAAAGCCCTAACATCACCGACCGCTGGGTTCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCGCACACCTTCCTCCTaGAAGCGCAGGTTTTCTGCT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMRTPSS*KRRFSA
Trigger: AGCAGAAAACCTGCGCTTCAAGGAGGAAGGTGTGCG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGATGCTGAGTGTGTCCTaGTCCCGGAGAGAAGCAGGA +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMMLSVS*SRREAG
Trigger: TCCTGCTTCTCTCCGGGACAAGGACACACTCAGCAT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTCAGTCCGAACACCTaGGCTGCTTCATGCACAAGC +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLSPNT*AASCTS
Trigger: GCTTGTGCATGAAGCAGCCAAGGTGTTCGGACTGAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS TCA 90 bp CCAAATACGCTGGTAACAACAGTCTTCAGTTTCACCAGGTTCAGCTaGTTATCACCTTTCGGATTCTCCAGGAGCAACACTCCACCTTGC +
Preference number: 5 (lower is better)
Translates to: PNTLVTTVFSFTRFS*LSPFGFSRSNTPPC
Trigger: GCAAGGTGGAGTGTTGCTCCTGGAGAATCCGAAAGGTGATAATCAGCTGAACCTGGTGAAACTGAAGACTGTTGTTACCAGCGTATTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGCTCGGCACTGCTTGTaGTACTCTGCAATCCCCATT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMARHCL*YSAIPI
Trigger: AATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGATCTGTTTCTGGAAATaGCCCAGTCACGGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMICFWK*PSHGPP
Trigger: AGGAGGCCCGTGACTGGGCAATTTCCAGAAACAGAT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGCGTTCTCAGTTTTCTaGTCAATCAGCTCCTCTCGA +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVAFSVF*SISSSR
Trigger: TCGAGAGGAGCTGATTGACAAGAAAACTGAGAACGC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCTGAGTTTTGACTGTTaGAGGCATTCCTGGAAACAG +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVLSFDC*RHSWKQ
Trigger: CTGTTTCCAGGAATGCCTCAAACAGTCAAAACTCAG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCCCCTGGCCACATCTTaGATCTTCACATACTGTATT +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVPLATS*IFTYCI
Trigger: AATACAGTATGTGAAGATCAAAGATGTGGCCAGGGG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTGTATTTCTTGCCTTaGAGAGAGGCACCAGGAAAC +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVLYFLP*REAPGN
Trigger: GTTTCCTGGTGCCTCTCTCAAAGGCAAGAAATACAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAAACCATCCTCTGGTTaGATCGATGCCTTCAGCAAT +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVKPSSG*IDAFSN
Trigger: ATTGCTGAAGGCATCGATCAAACCAGAGGATGGTTT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCTTACCACAGGGGAATaGATCAGATATAACCTGAGG +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVLTTGE*IRYNLR
Trigger: CCTCAGGTTATATCTGATCAATTCCCCTGTGGTAAG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTCACTTCTTCTTCCTaGTGGAGCCTAAAGACGTTC +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVFTSSS*WSLKTF
Trigger: GAACGTCTTTAGGCTCCACAAGGAAGAAGAAGTGAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGAGAATATCTACAAACTaGACCAGGCGAGGTACCACA +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVRISTN*TRRGTT
Trigger: TGTGGTACCTCGCCTGGTCAAGTTTGTAGATATTCT...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGGCTTCAAGGGAGCTTaGATTGTGGCAAATATGAAG +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVGFKGA*IVANMK
Trigger: CTTCATATTTGCCACAATCAAAGCTCCCTTGAAGCC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS TCA 90 bp TCCTGTTCATTCGGACATACCAGTTGGTTAGAATATCTACAAACTTaGCCAGGCGAGGTACCACAGTGTACAGCCTGTAAGCTGCCATTT +
Preference number: 5 (lower is better)
Translates to: SCSFGHTSWLEYLQT*PGEVPQCTACKLPF
Trigger: AAATGGCAGCTTACAGGCTGTACACTGTGGTACCTCGCCTGGTCAAGTTTGTAGATATTCTAACCAACTGGTATGTCCGAATGAACAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAGTATCTCATCACGATaGCTCGGCACTGCTTGTTGT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMSISSR*LGTACC
Trigger: ACAACAAGCAGTGCCGAGCAATCGTGATGAGATACT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTGTCATACAGCTGCTaGAAGACCCACCAGACTGAT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLSYSC*KTHQTD
Trigger: ATCAGTCTGGTGGGTCTTCAAGCAGCTGTATGACAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGGAGATCTGAGATTTTaGTTCCCGACAGTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVGDLRF*FPTVLQ
Trigger: TTGAAGAACTGTCGGGAACAAAAATCTCAGATCTCC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTTCACAATCACATTCTaGAAAGGTGGCTGTCCAAAG +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVFTITF*KGGCPK
Trigger: CTTTGGACAGCCACCTTTCAAGAATGTGATTGTGAA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCCGCTTGCTCATTTTTaGGCCATCACTTGCCAAGAT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMPLAHF*AITCQD
Trigger: ATCTTGGCAAGTGATGGCCAAAAAATGAGCAAGCGG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGCTGTTATTTCATCCGTaGGAACCAGATTGCACTTCT +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVLLFHP*EPDCTS
Trigger: AGAAGTGCAATCTGGTTCCAACGGATGAAATAACAG...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGGCTCAGCAAGTCAGTTaGGTTCTGTATTTCTGTTTC +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVAQQVS*VLYFCF
Trigger: GAAACAGAAATACAGAACCAAACTGACTTGCTGAGC...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTGAGTTTTGACTGTTaGAGGCATTCCTGGAAACAG +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLSFDC*RHSWKQ
Trigger: CTGTTTCCAGGAATGCCTCAAACAGTCAAAACTCAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCCCCTGGCCACATCTTaGATCTTCACATACTGTATT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMPLATS*IFTYCI
Trigger: AATACAGTATGTGAAGATCAAAGATGTGGCCAGGGG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTGTATTTCTTGCCTTaGAGAGAGGCACCAGGAAAC +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLYFLP*REAPGN
Trigger: GTTTCCTGGTGCCTCTCTCAAAGGCAAGAAATACAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAAACCATCCTCTGGTTaGATCGATGCCTTCAGCAAT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMKPSSG*IDAFSN
Trigger: ATTGCTGAAGGCATCGATCAAACCAGAGGATGGTTT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTTACCACAGGGGAATaGATCAGATATAACCTGAGG +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLTTGE*IRYNLR
Trigger: CCTCAGGTTATATCTGATCAATTCCCCTGTGGTAAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTTCACTTCTTCTTCCTaGTGGAGCCTAAAGACGTTC +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMFTSSS*WSLKTF
Trigger: GAACGTCTTTAGGCTCCACAAGGAAGAAGAAGTGAA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGGCTTCAAGGGAGCTTaGATTGTGGCAAATATGAAG +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMGFKGA*IVANMK
Trigger: CTTCATATTTGCCACAATCAAAGCTCCCTTGAAGCC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS TCA 90 bp GTGAGCGTGATTTCCAGCTCGGACCCCTTTAACTGTGTTTGCTCTTaGATAAGGATATTATCTGATGTTGGAACTGGATATGGCTTCAAG +
Preference number: 5 (lower is better)
Translates to: VSVISSSDPFNCVCS*IRILSDVGTGYGFK
Trigger: CTTGAAGCCATATCCAGTTCCAACATCAGATAATATCCTTATTCAAGAGCAAACACAGTTAAAGGGGTCCGAGCTGGAAATCACGCTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGCTGTTATTTCATCCGTaGGAACCAGATTGCACTTCT +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMLLFHP*EPDCTS
Trigger: AGAAGTGCAATCTGGTTCCAACGGATGAAATAACAG...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGGCTCAGCAAGTCAGTTaGGTTCTGTATTTCTGTTTC +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMAQQVS*VLYFCF
Trigger: GAAACAGAAATACAGAACCAAACTGACTTGCTGAGC...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp AGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGACATAGAGAGTGTGAGTGTGTGTGTAATTTCTTGTGTTaGAGTCTCATTCAGGAACAG +
Preference number: 5 (lower is better)
Translates to: RETERERERERHRECECVCNFLC*SLIQEQ
Trigger: CTGTTCCTGAATGAGACTCAAACACAAGAAATTACA...CACACACTCACACTCTCTATGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGAGCCATCTGCAGTTGTaGGCAAGACAGAAACATATA +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMSHLQL*ARQKHI
Trigger: TATATGTTTCTGTCTTGCCAACAACTGCAGATGGCT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS CCA 90 bp ATATACTTCTCCAAGGACCTGATATCCTCTAGAGCTTCTGGGTCTTaGTGGATGACCACAATTTCCTTCAGAGGATACTTTATTGGAATA +
Preference number: 5 (lower is better)
Translates to: IYFSKDLISSRASGS*WMTTISFRGYFIGI
Trigger: TATTCCAATAAAGTATCCTCTGAAGGAAATTGTGGTCATCCACCAAGACCCAGAAGCTCTAGAGGATATCAGGTCCTTGGAGAAGTATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGATTCGGACATACCAGTaGGTTAGAATATCTACAAAC +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMIRTYQ*VRISTN
Trigger: GTTTGTAGATATTCTAACCAACTGGTATGTCCGAAT...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS-3UTR CAA 90 bp TATAGAAATAAGCTTCGTGGTGTTGAGGTAACATTGGGACACTCCCCCAACATGTGTAATTTCTTGTGTTaGAGTCTCATTCAGGAACAG +
Preference number: 5 (lower is better)
Translates to: YRNKLRGVEVTLGHSPNMCNFLC*SLIQEQ
Trigger: CTGTTCCTGAATGAGACTCAAACACAAGAAATTACA...CATGTTGGGGGAGTGTCCCAATGTTACCTCAACACCACGAAGCTTATTTCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047363.14
ENSMUST00000165316.8
CDS CCA 90 bp TCTTCCTTCAGATTTTGCATTATAGTAAACTGTTATTTCATCCGTTaGAACCAGATTGCACTTCTTTCGAAGCTTCTGGATGCGATTGAT +
Preference number: 5 (lower is better)
Translates to: SSFRFCIIVNCYFIR*NQIALLSKLLDAID
Trigger: ATCAATCGCATCCAGAAGCTTCGAAAGAAGTGCAATCTGGTTCCAACGGATGAAATAACAGTTTACTATAATGCAAAATCTGAAGGAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 90 bp TATGGCTTCAAGGGAGCTTTGATTGTGGCAAATATGAAGTCAGTGTaGCTTTCAATGACATTATTCAAGTATCTTCCTTCAGATTTTGCA +
Preference number: 5 (lower is better)
Translates to: YGFKGALIVANMKSV*LSMTLFKYLPSDFA
Trigger: TGCAAAATCTGAAGGAAGATACTTGAATAATGTCATTGAAAGCCACACTGACTTCATATTTGCCACAATCAAAGCTCCCTTGAAGCCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp GCGTGTCTGACCTCCAGCAGAAAGGGTAGCTGTGAGTaGACGTGCCCGCCGCCAGCAGCCGGCCCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: ACLTSSRKGSCE*TCPPPAAGPAP
Trigger: AGGAGCAGGGCCGGCTGCTGGCGGCGGGCACGTTCACTCACAGCTACCCTTTCTGCTGGAGGTCAGACACGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp CAGCAGGGTGCTGGGGCTGCTGATGGGAGACGGGGATaGCCCTGCAGTCACACACAGCGTCCTCCCACTGAG +
Preference number: 6 (lower is better)
Translates to: QQGAGAADGRRG*PCSHTQRPPTE
Trigger: CTCAGTGGGAGGACGCTGTGTGTGACTGCAGGGGCATCCCCGTCTCCCATCAGCAGCCCCAGCACCCTGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp CCAGCAGTCAAACACCTCAGAGACGCGCCGCAATGGTaGTTTCCCGCAGCGGGATGGGATGGTCAGGTGGTC +
Preference number: 6 (lower is better)
Translates to: PAVKHLRDAPQW*FPAAGWDGQVV
Trigger: GACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp CGCGCCGCAATGGTGCTTTCCCGCAGCGGGATGGGATaGTCAGGTGGTCGATGCTCTCTCTGTGGAGATCTG +
Preference number: 6 (lower is better)
Translates to: RAAMVLSRSGMG*SGGRCSLCGDL
Trigger: CAGATCTCCACAGAGAGAGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp AGAGACGCGCCGCAATGGTGCTTTCCCGCAGCGGGATaGGATGGTCAGGTGGTCGATGCTCTCTCTGTGGAG +
Preference number: 6 (lower is better)
Translates to: RDAPQWCFPAAG*DGQVVDALSVE
Trigger: CTCCACAGAGAGAGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp GAACCAGCAGTCAAACACCTCAGAGACGCGCCGCAATaGTGCTTTCCCGCAGCGGGATGGGATGGTCAGGTG +
Preference number: 6 (lower is better)
Translates to: EPAVKHLRDAPQ*CFPAAGWDGQV
Trigger: CACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp GCGCGGTCCCTCCCGTGGCCTGGTCAAAGGTGTACATaGGGCGAATGTCTTCCTCATGCAGTTCGTGGCCTT +
Preference number: 6 (lower is better)
Translates to: ARSLPWPGQRCT*GECLPHAVRGL
Trigger: AAGGCCACGAACTGCATGAGGAAGACATTCGCCTCATGTACACCTTTGACCAGGCCACGGGAGGGACCGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp TGGAGAGTGGAGTGCCACACGCGGTGGAGAAGGGCATaGCCTTCACGCCTCTGTACACGAGGCCTTTGTCAT +
Preference number: 6 (lower is better)
Translates to: WRVECHTRWRRA*PSRLCTRGLCH
Trigger: ATGACAAAGGCCTCGTGTACAGAGGCGTGAAGGTCATGCCCTTCTCCACCGCGTGTGGCACTCCACTCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp GCCACTGATCCAATGCACACTCCTCCAAGTCTTCGCTaGCCCACAGTGGGATGGGGGTGCCCCAGTATCTGT +
Preference number: 6 (lower is better)
Translates to: ATDPMHTPPSLR*PTVGWGCPSIC
Trigger: ACAGATACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGGAGTGTGCATTGGATCAGTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS CCA 72 bp CCCACAGTGGGATGGGGGTGCCCCAGTATCTGTTTCTaGAAATTGCCCAGTCACGGGCCTCCTTCAGCCAAT +
Preference number: 6 (lower is better)
Translates to: PTVGWGCPSICF*KLPSHGPPSAN
Trigger: ATTGGCTGAAGGAGGCCCGTGACTGGGCAATTTCCAGAAACAGATACTGGGGCACCCCCATCCCACTGTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
ENSMUST00000171510.2
CDS TCA 72 bp CTGATCCAATGCACACTACCTCCTCCAAGTCTTCGCTaGCCCACAGTGGGATGGGGGTGCCCCAGTATCTGT +
Preference number: 6 (lower is better)
Translates to: LIQCTLPPPSLR*PTVGWGCPSIC
Trigger: ACAGATACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGGAGGTAGTGTGCATTGGATCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp CATTGCTCAGCCGCTTTATGGCCATCATCACCGCTTTaGAGGCCCCCTTCAGGCGCTTCCCAAGGACCATGT +
Preference number: 6 (lower is better)
Translates to: HCSAALWPSSPL*RPPSGASQGPC
Trigger: ACATGGTCCTTGGGAAGCGCCTGAAGGGGGCCTTCAAAGCGGTGATGATGGCCATAAAGCGGCTGAGCAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp ACACCTTGGCTGCTTCATGCACAAGCCCTTGGTGGGTaGGGCCGTTCTGTCCGAGTGGGTTTTCAAGCAGGA +
Preference number: 6 (lower is better)
Translates to: TPWLLHAQALGG*GRSVRVGFQAG
Trigger: TCCTGCTTGAAAACCCACTCGGACAGAACGGCCTCACCCACCAAGGGCTTGTGCATGAAGCAGCCAAGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp GAGTGTGCTTCAAACTGCGCGGTCCCTCCCGTGGCCTaGTCAAAGGTGTACATGAGGCGAATGTCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: ECASNCAVPPVA*SKVYMRRMSSS
Trigger: TGAGGAAGACATTCGCCTCATGTACACCTTTGACCAGGCCACGGGAGGGACCGCGCAGTTTGAAGCACACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp AGTCCGAACACCTTGGCTGCTTCATGCACAAGCCCTTaGTGGGTGAGGCCGTTCTGTCCGAGTGGGTTTTCA +
Preference number: 6 (lower is better)
Translates to: SPNTLAASCTSP*WVRPFCPSGFS
Trigger: TGAAAACCCACTCGGACAGAACGGCCTCACCCACCAAGGGCTTGTGCATGAAGCAGCCAAGGTGTTCGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 72 bp TCATTGCTCAGCCGCTTTATGGCCATCATCACCGCTTaGAAGGCCCCCTTCAGGCGCTTCCCAAGGACCATG +
Preference number: 6 (lower is better)
Translates to: SLLSRFMAIITA*KAPFRRFPRTM
Trigger: CATGGTCCTTGGGAAGCGCCTGAAGGGGGCCTTCAAAGCGGTGATGATGGCCATAAAGCGGCTGAGCAATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp GGCCGTTCTGTCCGAGTGGGTTTTCAAGCAGGAGGGTaGCCACAGTTCCTGTTAAACACTCTTGTGGCTCTG +
Preference number: 6 (lower is better)
Translates to: GRSVRVGFQAGG*PQFLLNTLVAL
Trigger: CAGAGCCACAAGAGTGTTTAACAGGAACTGTGGGCACCCTCCTGCTTGAAAACCCACTCGGACAGAACGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp GACTTCCACTCAGCGGAGTATCTCATCACGATTGCTCGGCACTGCTaGTTGTACTCTGCAATCCCCATTTTGGCCACATCCTCCGGGCCT +
Preference number: 6 (lower is better)
Translates to: DFHSAEYLITIARHC*LYSAIPILATSSGP
Trigger: AGGCCCGGAGGATGTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGATACTCCGCTGAGTGGAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp GCTGCCATTTCGGTCTCAAAGAAGCCAAGGAGCGACTaGATGAAGGACAGAACCCAGCGGTCGGTGATGTTA +
Preference number: 6 (lower is better)
Translates to: AAISVSKKPRSD*MKDRTQRSVML
Trigger: TAACATCACCGACCGCTGGGTTCTGTCCTTCATGCAGTCGCTCCTTGGCTTCTTTGAGACCGAAATGGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp TGTCTTCCTCATGCAGTTCGTGGCCTTCCACAACAATaGTCCCGCTCTTCTGAAACCGCTCCAGCTCCTCAT +
Preference number: 6 (lower is better)
Translates to: CLPHAVRGLPQQ*SRSSETAPAPH
Trigger: ATGAGGAGCTGGAGCGGTTTCAGAAGAGCGGGAGCATTGTTGTGGAAGGCCACGAACTGCATGAGGAAGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp TTCCACTCAGCGGAGTATCTCATCACGATTGCTCGGCACTGCTTGTaGTACTCTGCAATCCCCATTTTGGCCACATCCTCCGGGCCTTTG +
Preference number: 6 (lower is better)
Translates to: FHSAEYLITIARHCL*YSAIPILATSSGPL
Trigger: CAAAGGCCCGGAGGATGTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGATACTCCGCTGAGTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp CACGGGAGCAGCACATCTTTGAGGACATCCCGCACACCTTCCTCCTaGAAGCGCAGGTTTTCTGCTCTTACCACAGGGGAATTGATCAGA +
Preference number: 6 (lower is better)
Translates to: HGSSTSLRTSRTPSS*KRRFSALTTGELIR
Trigger: TCTGATCAATTCCCCTGTGGTAAGAGCAGAAAACCTGCGCTTCAAGGAGGAAGGTGTGCGGGATGTCCTCAAAGATGTGCTGCTCCCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp CTGCAATCCCCATTTTGGCCACATCCTCCGGGCCTTTaGTGCCCAGTGTCTTATCGATTTCGTACTCCACAG +
Preference number: 6 (lower is better)
Translates to: LQSPFWPHPPGL*CPVSYRFRTPQ
Trigger: CTGTGGAGTACGAAATCGATAAGACACTGGGCATCAAAGGCCCGGAGGATGTGGCCAAAATGGGGATTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp TCTCATCACGATTGCTCGGCACTGCTTGTTGTACTCTaGAATCCCCATTTTGGCCACATCCTCCGGGCCTTT +
Preference number: 6 (lower is better)
Translates to: SHHDCSALLVVL*NPHFGHILRAF
Trigger: AAAGGCCCGGAGGATGTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp CAGCACCAAAGTAAGGAGCCTGGTGCACAACGCCTGTaGCTTCTTCATCCTTCACATAGTGGTCGACAAGCA +
Preference number: 6 (lower is better)
Translates to: QHQSKEPGAQRL*LLHPSHSGRQA
Trigger: TGCTTGTCGACCACTATGTGAAGGATGAAGAAGGCACAGGCGTTGTGCACCAGGCTCCTTACTTTGGTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp TGGTCAAAGGTGTACATGAGGCGAATGTCTTCCTCATaGAGTTCGTGGCCTTCCACAACAATGCTCCCGCTC +
Preference number: 6 (lower is better)
Translates to: WSKVYMRRMSSS*SSWPSTTMLPL
Trigger: GAGCGGGAGCATTGTTGTGGAAGGCCACGAACTGCATGAGGAAGACATTCGCCTCATGTACACCTTTGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp GTGTTTGAGTCTCATTCAGGAACAGCCTTAGCCTCCTaGTCCTCAGTCCGAACACCTTGGCTGCTTCATGCA +
Preference number: 6 (lower is better)
Translates to: VFESHSGTALAS*SSVRTPWLLHA
Trigger: TGCATGAAGCAGCCAAGGTGTTCGGACTGAGGAGCAGGAGGCTAAGGCTGTTCCTGAATGAGACTCAAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp AATGGTGCTTTCCCGCAGCGGGATGGGATGGTCAGGTaGTCGATGCTCTCTCTGTGGAGATCTGAGATTTTT +
Preference number: 6 (lower is better)
Translates to: NGAFPQRDGMVR*SMLSLWRSEIF
Trigger: AAAAATCTCAGATCTCCACAGAGAGAGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 72 bp AAGGGCATGACCTTCACGCCTCTGTACACGAGGCCTTaGTCATACAGCTGCTTGAAGACCCACCAGACTGAT +
Preference number: 6 (lower is better)
Translates to: KGMTFTPLYTRP*SYSCLKTHQTD
Trigger: ATCAGTCTGGTGGGTCTTCAAGCAGCTGTATGACAAAGGCCTCGTGTACAGAGGCGTGAAGGTCATGCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp TTGTTGTACTCTGCAATCCCCATTTTGGCCACATCCTCCGGGCCTTaGATGCCCAGTGTCTTATCGATTTCGTACTCCACAGGTAAGCCG +
Preference number: 6 (lower is better)
Translates to: LLYSAIPILATSSGP*MPSVLSISYSTGKP
Trigger: CGGCTTACCTGTGGAGTACGAAATCGATAAGACACTGGGCATCAAAGGCCCGGAGGATGTGGCCAAAATGGGGATTGCAGAGTACAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp TTTTGGCCATCACTTGCCAAGATGAGGCCATTCACAATCACATTCTaGAAAGGTGGCTGTCCAAAGAGCGCTGTGGCTAGCACCAGCAGG +
Preference number: 6 (lower is better)
Translates to: FWPSLAKMRPFTITF*KGGCPKSAVASTSR
Trigger: CCTGCTGGTGCTAGCCACAGCGCTCTTTGGACAGCCACCTTTCAAGAATGTGATTGTGAATGGCCTCATCTTGGCAAGTGATGGCCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp CACTCAGCGGAGTATCTCATCACGATTGCTCGGCACTaGTTGTTGTACTCTGCAATCCCCATTTTGGCCACA +
Preference number: 6 (lower is better)
Translates to: HSAEYLITIARH*LLYSAIPILAT
Trigger: TGTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGATACTCCGCTGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp TCCGTTGGAACCAGATTGCACTTCTTTCGAAGCTTCTaGATGCGATTGATGACTTCCCGAGCCATGCCCTCA +
Preference number: 6 (lower is better)
Translates to: SVGTRLHFFRSF*MRLMTSRAMPS
Trigger: TGAGGGCATGGCTCGGGAAGTCATCAATCGCATCCAGAAGCTTCGAAAGAAGTGCAATCTGGTTCCAACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp CACAGCGTCCTCCCACTGAGGCTCAGCAAGTCAGTTTaGTTCTGTATTTCTGTTTCACCGTGGAAGACTGAC +
Preference number: 6 (lower is better)
Translates to: HSVLPLRLSKSV*FCISVSPWKTD
Trigger: GTCAGTCTTCCACGGTGAAACAGAAATACAGAACCAAACTGACTTGCTGAGCCTCAGTGGGAGGACGCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 72 bp TCAGCGGAGTATCTCATCACGATTGCTCGGCACTGCTaGTTGTACTCTGCAATCCCCATTTTGGCCACATCC +
Preference number: 6 (lower is better)
Translates to: SAEYLITIARHC*LYSAIPILATS
Trigger: GGATGTGGCCAAAATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGATACTCCGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp GGATGGTCAGGTGGTCGATGCTCTCTCTGTGGAGATCTGAGATTTTaGTTCCCGACAGTTCTTCAAGCTCTGCCACTGATCCAATGCACA +
Preference number: 6 (lower is better)
Translates to: GWSGGRCSLCGDLRF*FPTVLQALPLIQCT
Trigger: TGTGCATTGGATCAGTGGCAGAGCTTGAAGAACTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAGAGCATCGACCACCTGACCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp GATGGTCAGGTGGTCGATGCTCTCTCTGTGGAGATCTaGGATTTTTGTTCCCGACAGTTCTTCAAGCTCTGC +
Preference number: 6 (lower is better)
Translates to: DGQVVDALSVEI*DFCSRQFFKLC
Trigger: GCAGAGCTTGAAGAACTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAGAGCATCGACCACCTGACCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp GATTTTTGTTCCCGACAGTTCTTCAAGCTCTGCCACTaGTCCAATGCACACTCCTCCAAGTCTTCGCTGACC +
Preference number: 6 (lower is better)
Translates to: DFCSRQFFKLCH*SNAHSSKSSLT
Trigger: GGTCAGCGAAGACTTGGAGGAGTGTGCATTGGATCAGTGGCAGAGCTTGAAGAACTGTCGGGAACAAAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171510.2
CDS GCA 72 bp AGTAGACTTCCACTCAGCGGAGTATCTCATCACGATTaGTCGGCACTGCTTGTTGTACTCTGCAATCCCCAT +
Preference number: 6 (lower is better)
Translates to: SRLPLSGVSHHD*SALLVVLCNPH
Trigger: ATGGGGATTGCAGAGTACAACAAGCAGTGCCGAGCAATCGTGATGAGATACTCCGCTGAGTGGAAGTCTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp CTCCAGGAGCAACACTCCACCTTGCTCGGTGCCATTTaGACAAATGTTAAGGTTCACATAAGCACAAGCAGG +
Preference number: 6 (lower is better)
Translates to: LQEQHSTLLGAI*TNVKVHISTSR
Trigger: CCTGCTTGTGCTTATGTGAACCTTAACATTTGTGCAAATGGCACCGAGCAAGGTGGAGTGTTGCTCCTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp ATCCTTGTAATTCTGGTTAGATTCGAAGTTGGAGAGTaGAGTGCCACACGCGGTGGAGAAGGGCATGACCTT +
Preference number: 6 (lower is better)
Translates to: ILVILVRFEVGE*SATRGGEGHDL
Trigger: AAGGTCATGCCCTTCTCCACCGCGTGTGGCACTCCACTCTCCAACTTCGAATCTAACCAGAATTACAAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 72 bp GGTGGTCGATGCTCTCTCTGTGGAGATCTGAGATTTTaGTTCCCGACAGTTCTTCAAGCTCTGCCACTGATC +
Preference number: 6 (lower is better)
Translates to: GGRCSLCGDLRF*FPTVLQALPLI
Trigger: GATCAGTGGCAGAGCTTGAAGAACTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAGAGCATCGACCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
ENSMUST00000171510.2
CDS CAA 72 bp TTGAAGCGCAGGTTTTCTGCTCTTACCACAGGGGAATaGATCAGATATAACCTGAGGGCGTCCGCACCATAC +
Preference number: 6 (lower is better)
Translates to: LKRRFSALTTGE*IRYNLRASAPY
Trigger: GTATGGTGCGGACGCCCTCAGGTTATATCTGATCAATTCCCCTGTGGTAAGAGCAGAAAACCTGCGCTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp ACCCAGCGGTCGGTGATGTTAGGGCTTTCTCTGACTGTATGCTCGTaGTATAGGAACTTCACTTCTTCTTCCTTGTGGAGCCTAAAGACG +
Preference number: 6 (lower is better)
Translates to: TQRSVMLGLSLTVCS*YRNFTSSSLWSLKT
Trigger: CGTCTTTAGGCTCCACAAGGAAGAAGAAGTGAAGTTCCTATACAACGAGCATACAGTCAGAGAAAGCCCTAACATCACCGACCGCTGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp GATTTTTGTTCCCGACAGTTCTTCAAGCTCTGCCACTaGTCCAATGCACACTACCTCCTCCAAGTCTTCGCT +
Preference number: 6 (lower is better)
Translates to: DFCSRQFFKLCH*SNAHYLLQVFA
Trigger: AGCGAAGACTTGGAGGAGGTAGTGTGCATTGGATCAGTGGCAGAGCTTGAAGAACTGTCGGGAACAAAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp CCACTCTCACCCTTTAACCTCCTCCTGTTCATTCGGACATACCAGTaGGTTAGAATATCTACAAACTTGACCAGGCGAGGTACCACAGTG +
Preference number: 6 (lower is better)
Translates to: PLSPFNLLLFIRTYQ*VRISTNLTRRGTTV
Trigger: CACTGTGGTACCTCGCCTGGTCAAGTTTGTAGATATTCTAACCAACTGGTATGTCCGAATGAACAGGAGGAGGTTAAAGGGTGAGAGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS GCA 72 bp CAGCGGTCGGTGATGTTAGGGCTTTCTCTGACTGTATaGTCGTTGTATAGGAACTTCACTTCTTCTTCCTTG +
Preference number: 6 (lower is better)
Translates to: QRSVMLGLSLTV*SLYRNFTSSSL
Trigger: CAAGGAAGAAGAAGTGAAGTTCCTATACAACGAGCATACAGTCAGAGAAAGCCCTAACATCACCGACCGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp GAGGGCGTCCGCACCATACTTATCGATGATGGAAACTaGATCTGGGTAGTTCTTTTTCCGCTTGCTCATTTT +
Preference number: 6 (lower is better)
Translates to: EGVRTILIDDGN*IWVVLFPLAHF
Trigger: AAAATGAGCAAGCGGAAAAAGAACTACCCAGATCCAGTTTCCATCATCGATAAGTATGGTGCGGACGCCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp TCCAAGGACCTGATATCCTCTAGAGCTTCTGGGTCTTaGTGGATGACCACAATTTCCTTCAGAGGATACTTT +
Preference number: 6 (lower is better)
Translates to: SKDLISSRASGS*WMTTISFRGYF
Trigger: AAAGTATCCTCTGAAGGAAATTGTGGTCATCCACCAAGACCCAGAAGCTCTAGAGGATATCAGGTCCTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 72 bp GTATGCTCGTTGTATAGGAACTTCACTTCTTCTTCCTaGTGGAGCCTAAAGACGTTCTGGATGAAGAAGCGG +
Preference number: 6 (lower is better)
Translates to: VCSLYRNFTSSS*WSLKTFWMKKR
Trigger: CCGCTTCTTCATCCAGAACGTCTTTAGGCTCCACAAGGAAGAAGAAGTGAAGTTCCTATACAACGAGCATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 72 bp CCCTTTAACCTCCTCCTGTTCATTCGGACATACCAGTaGGTTAGAATATCTACAAACTTGACCAGGCGAGGT +
Preference number: 6 (lower is better)
Translates to: PFNLLLFIRTYQ*VRISTNLTRRG
Trigger: ACCTCGCCTGGTCAAGTTTGTAGATATTCTAACCAACTGGTATGTCCGAATGAACAGGAGGAGGTTAAAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp CGCATAGTGCAAGGTTACTGGGTAGAGTCCAAGGAGTaGTTGTCCAAGCAACTAAGGATGTATTTTCATCTT +
Preference number: 6 (lower is better)
Translates to: RIVQGYWVESKE*LSKQLRMYFHL
Trigger: AAGATGAAAATACATCCTTAGTTGCTTGGACAACCACTCCTTGGACTCTACCCAGTAACCTTGCACTATGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp GATGGAAACTGGATCTGGGTAGTTCTTTTTCCGCTTGCTCATTTTTaGGCCATCACTTGCCAAGATGAGGCCATTCACAATCACATTCTT +
Preference number: 6 (lower is better)
Translates to: DGNWIWVVLFPLAHF*AITCQDEAIHNHIL
Trigger: AAGAATGTGATTGTGAATGGCCTCATCTTGGCAAGTGATGGCCAAAAAATGAGCAAGCGGAAAAAGAACTACCCAGATCCAGTTTCCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 72 bp TCTGATGTTGGAACTGGATATGGCTTCAAGGGAGCTTaGATTGTGGCAAATATGAAGTCAGTGTGGCTTTCA +
Preference number: 6 (lower is better)
Translates to: SDVGTGYGFKGA*IVANMKSVWLS
Trigger: TGAAAGCCACACTGACTTCATATTTGCCACAATCAAAGCTCCCTTGAAGCCATATCCAGTTCCAACATCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp AACTTTGGCCTGAGTTTTGACTGTTTGAGGCATTCCTaGAAACAGTTATGTTTGGACCAGAACTCCAAGATT +
Preference number: 6 (lower is better)
Translates to: NFGLSFDCLRHS*KQLCLDQNSKI
Trigger: AATCTTGGAGTTCTGGTCCAAACATAACTGTTTCCAGGAATGCCTCAAACAGTCAAAACTCAGGCCAAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
ENSMUST00000172254.3
CDS TCA 72 bp AGTTTGGTTCTGTATTTCTGTTTCACCGTGGAAGACTaGCAGCTTTGCATTTTTAACACCAAATACGCTGGT +
Preference number: 6 (lower is better)
Translates to: SLVLYFCFTVED*QLCIFNTKYAG
Trigger: ACCAGCGTATTTGGTGTTAAAAATGCAAAGCTGTCAGTCTTCCACGGTGAAACAGAAATACAGAACCAAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 90 bp AGGATATTATCTGATGTTGGAACTGGATATGGCTTCAAGGGAGCTTaGATTGTGGCAAATATGAAGTCAGTGTGGCTTTCAATGACATTA +
Preference number: 6 (lower is better)
Translates to: RILSDVGTGYGFKGA*IVANMKSVWLSMTL
Trigger: TAATGTCATTGAAAGCCACACTGACTTCATATTTGCCACAATCAAAGCTCCCTTGAAGCCATATCCAGTTCCAACATCAGATAATATCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS TCA 72 bp ATTTCCAGCTCGGACCCCTTTAACTGTGTTTGCTCTTaGATAAGGATATTATCTGATGTTGGAACTGGATAT +
Preference number: 6 (lower is better)
Translates to: ISSSDPFNCVCS*IRILSDVGTGY
Trigger: ATATCCAGTTCCAACATCAGATAATATCCTTATTCAAGAGCAAACACAGTTAAAGGGGTCCGAGCTGGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CCA 72 bp AAGGGAGCTTTGATTGTGGCAAATATGAAGTCAGTGTaGCTTTCAATGACATTATTCAAGTATCTTCCTTCA +
Preference number: 6 (lower is better)
Translates to: KGALIVANMKSV*LSMTLFKYLPS
Trigger: TGAAGGAAGATACTTGAATAATGTCATTGAAAGCCACACTGACTTCATATTTGCCACAATCAAAGCTCCCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8
CDS CAA 72 bp CAGATTTTGCATTATAGTAAACTGTTATTTCATCCGTaGGAACCAGATTGCACTTCTTTCGAAGCTTCTGGA +
Preference number: 6 (lower is better)
Translates to: QILHYSKLLFHP*EPDCTSFEASG
Trigger: TCCAGAAGCTTCGAAAGAAGTGCAATCTGGTTCCAACGGATGAAATAACAGTTTACTATAATGCAAAATCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047363.14
ENSMUST00000164260.8
ENSMUST00000165316.8