Pregenerated sensors for HYLS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050555Ensembl transcript IDs: ENSMUST00000115110.5
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | GGTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCGTTATCCTAACTCTTTaGGTAGGAGAGACATGTTTT | + |
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Preference number: 3 (lower is better) Translates to: GVLYLCDIPTTLGRTSEVVILTL*VGETCF Trigger: AAAACATGTCTCTCCTACCAAAAGAGTTAGGATAAC...GACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR GCA 90 bp | GGTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCTGTGGGAAGTGCAGGTaGATAGGAAGAGCCGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: GVLYLCDIPTTLGRTSEVCGKCR*IGRAGL Trigger: GAGACCGGCTCTTCCTATGCACCTGCACTTCCCACA...GACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR GCA 90 bp | GGTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCGCTGTATGTGGGAAGTaGAGGTGCATAGGAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GVLYLCDIPTTLGRTSEVAVCGK*RCIGRA Trigger: GGCTCTTCCTATGCACCTGCACTTCCCACATACAGC...GACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR TCA 90 bp | GTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCCGGTTTCGGCTTAACTaGTCCAGTCTGGGGAGAATA | + |
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Preference number: 4 (lower is better) Translates to: VYYIYVTYQQPSEEPVKSRFRLN*SSLGRI Trigger: TATTCTCCCCAGACTGGATCAGTTAAGCCGAAACCG...GGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR TCA 90 bp | GTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCGAAGCTTCTTGGGCATaGCACCATTTGCAAGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: VYYIYVTYQQPSEEPVKSEASWA*HHLQGH Trigger: GTGACCTTGCAAATGGTGTCATGCCCAAGAAGCTTC...GGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR TCA 90 bp | GGTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCGGAACTGTAAGTTCATaGACCTGTGTCTCAAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GVLYLCDIPTTLGRTSEVGTVSS*TCVSSP Trigger: GGGACTTGAGACACAGGTTCATGAACTTACAGTTCC...GACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR TCA 90 bp | GGTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCGTAACTCCTTTCTATaGTCTTCACCAGGAAACCGC | + |
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Preference number: 4 (lower is better) Translates to: GVLYLCDIPTTLGRTSEVRNSFL*SSPGNR Trigger: GCGGTTTCCTGGTGAAGATCATAGAAAGGAGTTACG...GACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR GCA 90 bp | TATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTTAGGGCATGACACCATTTaGAAGGTCACAACGCACACC | + |
|
Preference number: 4 (lower is better) Translates to: YYIYVTYQQPSEEPVKSLGHDTI*KVTTHT Trigger: GGTGTGCGTTGTGACCTTGCAAATGGTGTCATGCCC...TAAGGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR TCA 90 bp | TATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTTACTTTCCTGGGGTTACTaGGGCTTTACTGTAGGGATC | + |
|
Preference number: 4 (lower is better) Translates to: YYIYVTYQQPSEEPVKSLLSWGY*GFTVGI Trigger: GATCCCTACAGTAAAGCCTCAGTAACCCCAGGAAAG...TAAGGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR GCA 90 bp | CCTTATTCTGTGTTCTGCCTGCTTTTCAAGGCAATTATATTTGAAGGAGAGATATCCTTCACCCTGCCCTaGACAGATCCGTGTAAATGC | + |
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Preference number: 4 (lower is better) Translates to: PYSVFCLLFKAIIFEGEISFTLP*TDPCKC Trigger: GCATTTACACGGATCTGTGCAGGGCAGGGTGAAGGA...TATCTCTCCTTCAAATATAATTGCCTTGAAAAGCAGGCAGAACACAGAATAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR GCA 90 bp | CCTTATTCTGTGTTCTGCCTGCTTTTCAAGGCAATTATATTTGAAGGAGAGATAGAATCTCCTTCACCCTaGCCTGCACAGATCCGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: PYSVFCLLFKAIIFEGEIESPSP*PAQIRV Trigger: TACACGGATCTGTGCAGGGCAGGGTGAAGGAGATTC...TATCTCTCCTTCAAATATAATTGCCTTGAAAAGCAGGCAGAACACAGAATAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR GCA 90 bp | TATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTTACTACTCGGTCTATCTTaGCCCGGTTTCGGCTTAACT | + |
|
Preference number: 4 (lower is better) Translates to: YYIYVTYQQPSEEPVKSLLLGLS*PGFGLT Trigger: AGTTAAGCCGAAACCGGGGCAAGATAGACCGAGTAG...TAAGGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CCA 90 bp | CCTTATTCTGTGTTCTGCCTGCTTTTCAAGGCAATTATATTTGAAGGAGAGATATCATACTGGCCAGCCTaGGCTTCTCTCCGTGAATCT | + |
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Preference number: 4 (lower is better) Translates to: PYSVFCLLFKAIIFEGEISYWPA*ASLRES Trigger: AGATTCACGGAGAGAAGCCCAGGCTGGCCAGTATGA...TATCTCTCCTTCAAATATAATTGCCTTGAAAAGCAGGCAGAACACAGAATAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CCA 90 bp | GTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCAGGACTTGGGTCTGCTaGCAACAATCAAGTCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: VYYIYVTYQQPSEEPVKSRTWVC*QQSSLV Trigger: AACAAGACTTGATTGTTGCCAGCAGACCCAAGTCCT...GGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR TCA 90 bp | TATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTTAACCAGGAAACCGCATTaGATCCCAGTCTCTTTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: YYIYVTYQQPSEEPVKSLTRKPH*IPVSFV Trigger: TACAAAAGAGACTGGGATTCAATGCGGTTTCCTGGT...TAAGGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CCA 90 bp | TATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTTAGGTTTTCTGCATTTTTaGGAAGTCTCTGACACCGTG | + |
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Preference number: 4 (lower is better) Translates to: YYIYVTYQQPSEEPVKSLGFLHF*EVSDTV Trigger: CACGGTGTCAGAGACTTCCCAAAAATGCAGAAAACC...TAAGGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CCA 90 bp | GTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTGTACTCAAAATATCTaGCTACTCGGTCTATCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: VYYIYVTYQQPSEEPVKSCTQNI*LLGLSC Trigger: GCAAGATAGACCGAGTAGCCAGATATTTTGAGTACA...GGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CCA 90 bp | CCTTATTCTGTGTTCTGCCTGCTTTTCAAGGCAATTATATTTGAAGGAGAGATACTTCAGGATCCATATTaGCCCATTTTTGTCCACCAG | + |
|
Preference number: 4 (lower is better) Translates to: PYSVFCLLFKAIIFEGEILQDPY*PIFVHQ Trigger: CTGGTGGACAAAAATGGGCCAATATGGATCCTGAAG...TATCTCTCCTTCAAATATAATTGCCTTGAAAAGCAGGCAGAACACAGAATAAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CCA 90 bp | GTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCGATTCTGTACCTTCTTaGAACTGTAAGTTCATGAAC | + |
|
Preference number: 4 (lower is better) Translates to: VYYIYVTYQQPSEEPVKSDSVPS*NCKFMN Trigger: GTTCATGAACTTACAGTTCCAAGAAGGTACAGAATC...GGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CCA 90 bp | TATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTTACACCAGGTAATTGTTTaGAACATACACATGTTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: YYIYVTYQQPSEEPVKSLHQVIV*NIHMLR Trigger: CCTCAACATGTGTATGTTCCAAACAATTACCTGGTG...TAAGGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR GCA 90 bp | CCTTATTCTGTGTTCTGCCTGCTTTTCAAGGCAATTATATTTGAAGGAGAGATATCATCACTGGTTTTCTaGATTTTTGGGAAGTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: PYSVFCLLFKAIIFEGEISSLVF*IFGKSL Trigger: CAGAGACTTCCCAAAAATGCAGAAAACCAGTGATGA...TATCTCTCCTTCAAATATAATTGCCTTGAAAAGCAGGCAGAACACAGAATAAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CCA 90 bp | ATTAGAAATTCAAGTGGTGTATTATATCTATGTGACATACCAACAACCCTCGGACTTCCTCTTCATCACTaGTTTTCTGCATTTTTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: IRNSSGVLYLCDIPTTLGLPLHH*FSAFLG Trigger: TCCCAAAAATGCAGAAAACCAGTGATGAAGAGGAAG...TCCGAGGGTTGTTGGTATGTCACATAGATATAATACACCACTTGAATTTCTAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 90 bp | GGCTTTACTGTAGGGATCATACTGGCCAGCCTGGGCTTCTCTCCGTaGATCTCCTTCACCCTGCCCTGCACAGATCCGTGTAAATGCTGT | + |
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Preference number: 5 (lower is better) Translates to: GFTVGIILASLGFSP*ISFTLPCTDPCKCC Trigger: ACAGCATTTACACGGATCTGTGCAGGGCAGGGTGAAGGAGATTCACGGAGAGAAGCCCAGGCTGGCCAGTATGATCCCTACAGTAAAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 90 bp | GAAGTGCAGGTGCATAGGAAGAGCCGGTCTCTTTCCTGGGGTTACTaGGGCTTTACTGTAGGGATCATACTGGCCAGCCTGGGCTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: EVQVHRKSRSLSWGY*GFTVGIILASLGFS Trigger: AGAGAAGCCCAGGCTGGCCAGTATGATCCCTACAGTAAAGCCTCAGTAACCCCAGGAAAGAGACCGGCTCTTCCTATGCACCTGCACTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS GCA 90 bp | TCATACTGGCCAGCCTGGGCTTCTCTCCGTGAATCTCCTTCACCCTaGCCTGCACAGATCCGTGTAAATGCTGTAGCAGCAGCTAACATT | + |
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Preference number: 5 (lower is better) Translates to: SYWPAWASLRESPSP*PAQIRVNAVAAANI Trigger: AATGTTAGCTGCTGCTACAGCATTTACACGGATCTGTGCAGGGCAGGGTGAAGGAGATTCACGGAGAGAAGCCCAGGCTGGCCAGTATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS GCA 90 bp | ACCGTGGATGAAGTGACACGGCTTGCTGTATGTGGGAAGTGCAGGTaGATAGGAAGAGCCGGTCTCTTTCCTGGGGTTACTGAGGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: TVDEVTRLAVCGKCR*IGRAGLFPGVTEAL Trigger: TAAAGCCTCAGTAACCCCAGGAAAGAGACCGGCTCTTCCTATGCACCTGCACTTCCCACATACAGCAAGCCGTGTCACTTCATCCACGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CCA 90 bp | CAGTTGGCACCAGGTAATTGTTTGGAACATACACATGTTGAGGCTTaGACGGAGGTTCTGTTCGGGAAAGCATTTGCCCTCGGACACTCC | + |
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Preference number: 5 (lower is better) Translates to: QLAPGNCLEHTHVEA*TEVLFGKAFALGHS Trigger: GGAGTGTCCGAGGGCAAATGCTTTCCCGAACAGAACCTCCGTCCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTGGTGCCAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 90 bp | AAATATCTGGCTACTCGGTCTATCTTGCCCCGGTTTCGGCTTAACTaGTCCAGTCTGGGGAGAATAAAGGACTTGGGTCTGCTGGCAACA | + |
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Preference number: 5 (lower is better) Translates to: KYLATRSILPRFRLN*SSLGRIKDLGLLAT Trigger: TGTTGCCAGCAGACCCAAGTCCTTTATTCTCCCCAGACTGGATCAGTTAAGCCGAAACCGGGGCAAGATAGACCGAGTAGCCAGATATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 90 bp | CGGGAAAGCATTTGCCCTCGGACACTCCAGCGTAACTCCTTTCTATaGTCTTCACCAGGAAACCGCATTGAATCCCAGTCTCTTTTGTAC | + |
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Preference number: 5 (lower is better) Translates to: RESICPRTLQRNSFL*SSPGNRIESQSLLY Trigger: GTACAAAAGAGACTGGGATTCAATGCGGTTTCCTGGTGAAGATCATAGAAAGGAGTTACGCTGGAGTGTCCGAGGGCAAATGCTTTCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CCA 90 bp | CCGAAGGGCAGATCTTTTCTTCTCAGTTGGCACCAGGTAATTGTTTaGAACATACACATGTTGAGGCTTGGACGGAGGTTCTGTTCGGGA | + |
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Preference number: 5 (lower is better) Translates to: PKGRSFLLSWHQVIV*NIHMLRLGRRFCSG Trigger: TCCCGAACAGAACCTCCGTCCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTGGTGCCAACTGAGAAGAAAAGATCTGCCCTTCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CCA 90 bp | GTCACAACGCACACCCCACCGAAGGGCAGATCTTTTCTTCTCAGTTaGCACCAGGTAATTGTTTGGAACATACACATGTTGAGGCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: VTTHTPPKGRSFLLS*HQVIVWNIHMLRLG Trigger: TCCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTGGTGCCAACTGAGAAGAAAAGATCTGCCCTTCGGTGGGGTGTGCGTTGTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CCA 90 bp | TTTCTTCGCAGCACCTTCCTCTTCATCACTGGTTTTCTGCATTTTTaGGAAGTCTCTGACACCGTGGATGAAGTGACACGGCTTGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: FLRSTFLFITGFLHF*EVSDTVDEVTRLAV Trigger: TACAGCAAGCCGTGTCACTTCATCCACGGTGTCAGAGACTTCCCAAAAATGCAGAAAACCAGTGATGAAGAGGAAGGTGCTGCGAAGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CAA 90 bp | CCTTATTCTGTGTTCTGCCTGCTTTTCAAGGCAATTATATTTGAAGGAGAGATAGCTACTCGGTCTATCTaGCCCCGGTTTCGGCTTAAC | + |
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Preference number: 5 (lower is better) Translates to: PYSVFCLLFKAIIFEGEIATRSI*PRFRLN Trigger: GTTAAGCCGAAACCGGGGCAAGATAGACCGAGTAGC...TATCTCTCCTTCAAATATAATTGCCTTGAAAAGCAGGCAGAACACAGAATAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CAA 90 bp | CCTTATTCTGTGTTCTGCCTGCTTTTCAAGGCAATTATATTTGAAGGAGAGATAGGGAAGGGAAGCTTCTaGGGCATGACACCATTTGCA | + |
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Preference number: 5 (lower is better) Translates to: PYSVFCLLFKAIIFEGEIGKGSF*GMTPFA Trigger: TGCAAATGGTGTCATGCCCAAGAAGCTTCCCTTCCC...TATCTCTCCTTCAAATATAATTGCCTTGAAAAGCAGGCAGAACACAGAATAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CAA 90 bp | TATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTTAGGCAACAATCAAGTCTaGTTCATAAACAGGAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: YYIYVTYQQPSEEPVKSLGNNQV*FINRRV Trigger: GACCCTCCTGTTTATGAACAAGACTTGATTGTTGCC...TAAGGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CAA 90 bp | ATTAGAAATTCAAGTGGTGTATTATATCTATGTGACATACCAACAACCCTCGGAGGGAGAATAAAGGACTaGGGTCTGCTGGCAACAATC | + |
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Preference number: 5 (lower is better) Translates to: IRNSSGVLYLCDIPTTLGGRIKD*GLLATI Trigger: GATTGTTGCCAGCAGACCCAAGTCCTTTATTCTCCC...TCCGAGGGTTGTTGGTATGTCACATAGATATAATACACCACTTGAATTTCTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CAA 90 bp | GTGTATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCATCTTTTCTTCTCAGTaGGCACCAGGTAATTGTTTG | + |
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Preference number: 5 (lower is better) Translates to: VYYIYVTYQQPSEEPVKSIFSSQ*APGNCL Trigger: CAAACAATTACCTGGTGCCAACTGAGAAGAAAAGAT...GGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CAA 90 bp | ATTAGAAATTCAAGTGGTGTATTATATCTATGTGACATACCAACAACCCTCGGACATATTGGCCCATTTTaGTCCACCAGGTCCTATCAG | + |
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Preference number: 5 (lower is better) Translates to: IRNSSGVLYLCDIPTTLGHIGPF*STRSYQ Trigger: CTGATAGGACCTGGTGGACAAAAATGGGCCAATATG...TCCGAGGGTTGTTGGTATGTCACATAGATATAATACACCACTTGAATTTCTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CAA 90 bp | TATTATATCTATGTGACATACCAACAACCCTCGGAAGAACCAGTGAAGTCCTTAGCACCAGGTAATTGTTaGGAACATACACATGTTGAG | + |
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Preference number: 5 (lower is better) Translates to: YYIYVTYQQPSEEPVKSLAPGNC*EHTHVE Trigger: CTCAACATGTGTATGTTCCAAACAATTACCTGGTGC...TAAGGACTTCACTGGTTCTTCCGAGGGTTGTTGGTATGTCACATAGATATAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS-3UTR CAA 90 bp | CCTTATTCTGTGTTCTGCCTGCTTTTCAAGGCAATTATATTTGAAGGAGAGATAGAATCCCAGTCTCTTTaGTACTCAAAATATCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: PYSVFCLLFKAIIFEGEIESQSL*YSKYLA Trigger: AGCCAGATATTTTGAGTACAAAAGAGACTGGGATTC...TATCTCTCCTTCAAATATAATTGCCTTGAAAAGCAGGCAGAACACAGAATAAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS GCA 72 bp | GTGGATGAAGTGACACGGCTTGCTGTATGTGGGAAGTaGAGGTGCATAGGAAGAGCCGGTCTCTTTCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: VDEVTRLAVCGK*RCIGRAGLFPG Trigger: CCCAGGAAAGAGACCGGCTCTTCCTATGCACCTGCACTTCCCACATACAGCAAGCCGTGTCACTTCATCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 72 bp | GTGCATAGGAAGAGCCGGTCTCTTTCCTGGGGTTACTaGGGCTTTACTGTAGGGATCATACTGGCCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: VHRKSRSLSWGY*GFTVGIILASL Trigger: CAGGCTGGCCAGTATGATCCCTACAGTAAAGCCTCAGTAACCCCAGGAAAGAGACCGGCTCTTCCTATGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS GCA 72 bp | GAAGTGACACGGCTTGCTGTATGTGGGAAGTGCAGGTaGATAGGAAGAGCCGGTCTCTTTCCTGGGGTTACT | + |
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Preference number: 6 (lower is better) Translates to: EVTRLAVCGKCR*IGRAGLFPGVT Trigger: AGTAACCCCAGGAAAGAGACCGGCTCTTCCTATGCACCTGCACTTCCCACATACAGCAAGCCGTGTCACTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 72 bp | GCTACTCGGTCTATCTTGCCCCGGTTTCGGCTTAACTaGTCCAGTCTGGGGAGAATAAAGGACTTGGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: ATRSILPRFRLN*SSLGRIKDLGL Trigger: CAGACCCAAGTCCTTTATTCTCCCCAGACTGGATCAGTTAAGCCGAAACCGGGGCAAGATAGACCGAGTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 72 bp | TGCATTTTTGGGAAGTCTCTGACACCGTGGATGAAGTaGCACGGCTTGCTGTATGTGGGAAGTGCAGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: CIFGKSLTPWMK*HGLLYVGSAGA Trigger: TGCACCTGCACTTCCCACATACAGCAAGCCGTGTCACTTCATCCACGGTGTCAGAGACTTCCCAAAAATGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CAA 90 bp | GGTCACAACGCACACCCCACCGAAGGGCAGATCTTTTCTTCTCAGTaGGCACCAGGTAATTGTTTGGAACATACACATGTTGAGGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: GHNAHPTEGQIFSSQ*APGNCLEHTHVEAW Trigger: CCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTGGTGCCAACTGAGAAGAAAAGATCTGCCCTTCGGTGGGGTGTGCGTTGTGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CAA 90 bp | ACCGAAGGGCAGATCTTTTCTTCTCAGTTGGCACCAGGTAATTGTTaGGAACATACACATGTTGAGGCTTGGACGGAGGTTCTGTTCGGG | + |
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Preference number: 6 (lower is better) Translates to: TEGQIFSSQLAPGNC*EHTHVEAWTEVLFG Trigger: CCCGAACAGAACCTCCGTCCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTGGTGCCAACTGAGAAGAAAAGATCTGCCCTTCGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 72 bp | ATTTGCCCTCGGACACTCCAGCGTAACTCCTTTCTATaGTCTTCACCAGGAAACCGCATTGAATCCCAGTCT | + |
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Preference number: 6 (lower is better) Translates to: ICPRTLQRNSFL*SSPGNRIESQS Trigger: AGACTGGGATTCAATGCGGTTTCCTGGTGAAGATCATAGAAAGGAGTTACGCTGGAGTGTCCGAGGGCAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CCA 72 bp | CCAGGTAATTGTTTGGAACATACACATGTTGAGGCTTaGACGGAGGTTCTGTTCGGGAAAGCATTTGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: PGNCLEHTHVEA*TEVLFGKAFAL Trigger: GAGGGCAAATGCTTTCCCGAACAGAACCTCCGTCCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CAA 90 bp | TTTCTTCTCAGTTGGCACCAGGTAATTGTTTGGAACATACACATGTaGAGGCTTGGACGGAGGTTCTGTTCGGGAAAGCATTTGCCCTCG | + |
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Preference number: 6 (lower is better) Translates to: FLLSWHQVIVWNIHM*RLGRRFCSGKHLPS Trigger: CGAGGGCAAATGCTTTCCCGAACAGAACCTCCGTCCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTGGTGCCAACTGAGAAGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS TCA 72 bp | CTGGGGATTCTGTACCTTCTTGGAACTGTAAGTTCATaGACCTGTGTCTCAAGTCCCAGAGACCCAAATCAC | + |
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Preference number: 6 (lower is better) Translates to: LGILYLLGTVSS*TCVSSPRDPNH Trigger: GTGATTTGGGTCTCTGGGACTTGAGACACAGGTTCATGAACTTACAGTTCCAAGAAGGTACAGAATCCCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CAA 72 bp | GTAGCAGCAGCTAACATTCGTTCTTCAGGATCCATATaGGCCCATTTTTGTCCACCAGGTCCTATCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: VAAANIRSSGSI*AHFCPPGPISC Trigger: GCAACTGATAGGACCTGGTGGACAAAAATGGGCCAATATGGATCCTGAAGAACGAATGTTAGCTGCTGCTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CAA 72 bp | AGTTGGCACCAGGTAATTGTTTGGAACATACACATGTaGAGGCTTGGACGGAGGTTCTGTTCGGGAAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: SWHQVIVWNIHM*RLGRRFCSGKH Trigger: ATGCTTTCCCGAACAGAACCTCCGTCCAAGCCTCAACATGTGTATGTTCCAAACAATTACCTGGTGCCAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CAA 90 bp | GTAAATGCTGTAGCAGCAGCTAACATTCGTTCTTCAGGATCCATATaGGCCCATTTTTGTCCACCAGGTCCTATCAGTTGCTTCATTGCT | + |
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Preference number: 6 (lower is better) Translates to: VNAVAAANIRSSGSI*AHFCPPGPISCFIA Trigger: AGCAATGAAGCAACTGATAGGACCTGGTGGACAAAAATGGGCCAATATGGATCCTGAAGAACGAATGTTAGCTGCTGCTACAGCATTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CAA 72 bp | TCTTCACCAGGAAACCGCATTGAATCCCAGTCTCTTTaGTACTCAAAATATCTGGCTACTCGGTCTATCTTG | + |
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Preference number: 6 (lower is better) Translates to: SSPGNRIESQSL*YSKYLATRSIL Trigger: CAAGATAGACCGAGTAGCCAGATATTTTGAGTACAAAAGAGACTGGGATTCAATGCGGTTTCCTGGTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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| CDS CAA 72 bp | AATAAAGGACTTGGGTCTGCTGGCAACAATCAAGTCTaGTTCATAAACAGGAGGGTCCATTTCTTCTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: NKGLGSAGNNQV*FINRRVHFFSL Trigger: CAAAGAGAAGAAATGGACCCTCCTGTTTATGAACAAGACTTGATTGTTGCCAGCAGACCCAAGTCCTTTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115110.5 |
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