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Pregenerated sensors for HYAL6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029679

Ensembl transcript IDs: ENSMUST00000031690.6

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTTGTCTTGACTGACTTTAGCTCAGTTTGTAAGCCAAGCTGGCTTTaGATTTGTAATGGATCTCTGCCTTCCAGGTGCTCAGATTATAGG +
Preference number: 1 (lower is better)
Translates to: VVLTDFSSVCKPSWL*ICNGSLPSRCSDYR
Trigger: CCTATAATCTGAGCACCTGGAAGGCAGAGATCCATTACAAATTCAAAGCCAGCTTGGCTTACAAACTGAGCTAAAGTCAGTCAAGACAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR TCA 90 bp TGGGTTCTACCATTGCTGTATTATTCACTGGTGGCTGAACACAACTaGGCATGTATTATTCTTTACCTGCTTCGTTTCCTTCACCTTCAA +
Preference number: 1 (lower is better)
Translates to: WVLPLLYYSLVAEHN*ACIILYLLRFLHLQ
Trigger: TTGAAGGTGAAGGAAACGAAGCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACAGCAATGGTAGAACCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR CCA 90 bp GGCAGTTTAAACAGTGGGTTCTACCATTGCTGTATTATTCACTGGTaGCTGAACACAACTGAGCATGTATTATTCTTTACCTGCTTCGTT +
Preference number: 1 (lower is better)
Translates to: GSLNSGFYHCCIIHW*LNTTEHVLFFTCFV
Trigger: AACGAAGCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACAGCAATGGTAGAACCCACTGTTTAAACTGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR GCA 90 bp ATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTTGTGTTaGTTGTTATTTAAAAGTTTACAAGCCCTGAAATGCAGAGTTGTC +
Preference number: 1 (lower is better)
Translates to: IIVAAAAAVVLLLLC*LLFKSLQALKCRVV
Trigger: GACAACTCTGCATTTCAGGGCTTGTAAACTTTTAAATAACAAGCAACACAACAATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR GCA 90 bp TCTCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTTACAAGCCCTGAAATaGAGAGTTGTCTCTTCTGGG +
Preference number: 2 (lower is better)
Translates to: SPSVSIIVAAAAAVVLLLLQALK*RVVSSG
Trigger: CCCAGAAGAGACAACTCTGCATTTCAGGGCTTGTAA...CAATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR CAA 90 bp GTTCTGTGTGTGCTCCAGGATGATATCTACCTAATACTGCAGAGTTaGGGACATACTAGACAGGGAAATACCCTTCCTTGCCTTAGAAAA +
Preference number: 2 (lower is better)
Translates to: VLCVLQDDIYLILQS*GHTRQGNTLPCLRK
Trigger: TTTTCTAAGGCAAGGAAGGGTATTTCCCTGTCTAGTATGTCCCAAACTCTGCAGTATTAGGTAGATATCATCCTGGAGCACACACAGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR TCA 90 bp TCTCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGAAAGTTTACAAGCCCTaGAATGCAGAGTTGTCTCTT +
Preference number: 2 (lower is better)
Translates to: SPSVSIIVAAAAAVVLLLKVYKP*NAELSL
Trigger: AAGAGACAACTCTGCATTTCAGGGCTTGTAAACTTT...CAATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR TCA 90 bp TGTATTATTCACTGGTGGCTGAACACAACTGAGCATGTATTATTCTTTACCTGCGTGTGTGCTCCAGGATaGTATCTACCTAATACTGCA +
Preference number: 2 (lower is better)
Translates to: CIIHWWLNTTEHVLFFTCVCAPG*YLPNTA
Trigger: TGCAGTATTAGGTAGATATCATCCTGGAGCACACAC...GCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR CCA 90 bp TCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTTCAGAGTTGTCTCTTCTaGGTTTGCTCCTTTTTATTT +
Preference number: 2 (lower is better)
Translates to: SIGEYHCCCCCCCCFAIVQSCLF*VCSFLF
Trigger: AAATAAAAAGGAGCAAACCCAGAAGAGACAACTCTG...AACAATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR CCA 90 bp TCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTTCCAGATTCGTTCTTTTaGATCTTTGCTATTTTGCTT +
Preference number: 2 (lower is better)
Translates to: SIGEYHCCCCCCCCFAIVPDSFF*IFAILL
Trigger: AAGCAAAATAGCAAAGATCCAAAAGAACGAATCTGG...AACAATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR CAA 90 bp ATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTTGTGTTGCTaGTTATTTAAAAGTTTACAAGCCCTGAAATGCAGAGTTGTCTCT +
Preference number: 2 (lower is better)
Translates to: IVAAAAAVVLLLLCC*LFKSLQALKCRVVS
Trigger: AGAGACAACTCTGCATTTCAGGGCTTGTAAACTTTTAAATAACAAGCAACACAACAATAGCAAAACAACAGCAGCAGCAGCAGCAACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR TCA 90 bp TTAATACTTAATATCTGCCTTTCCTGCTTTACTAGGAGTAGTTCAGTGTCTGAGCCACACTCACTCGATTaGGTCTTTGTGAAAATGTGT +
Preference number: 2 (lower is better)
Translates to: LILNICLSCFTRSSSVSEPHSLD*VFVKMC
Trigger: ACACATTTTCACAAAGACTCAATCGAGTGAGTGTGG...CTCAGACACTGAACTACTCCTAGTAAAGCAGGAAAGGCAGATATTAAGTATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR GCA 90 bp TTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGTATATCTCTGCCTTCCAGGTaGTCAGATTATAGGAGGAAA +
Preference number: 2 (lower is better)
Translates to: FQMNYHPVTIDRLFGHSISLPSR*SDYRRK
Trigger: TTTCCTCCTATAATCTGAGCACCTGGAAGGCAGAGA...TATACTATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR GCA 90 bp GAAAATTTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATTTTGTAATGGATCTCTaGCTTCCAGGTGCTCAGATT +
Preference number: 2 (lower is better)
Translates to: ENFQMNYHPVTIDRLFGHFVMDL*LPGAQI
Trigger: AATCTGAGCACCTGGAAGGCAGAGATCCATTACAAA...ATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAAATTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR-3UTR TCA 90 bp TTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGTATATTGCCCAGCATGAAGTaGACATCCAACAATTTGTAT +
Preference number: 2 (lower is better)
Translates to: FQMNYHPVTIDRLFGHSILPSMK*TSNNLY
Trigger: ATACAAATTGTTGGATGTTCACTTCATGCTGGGCAA...TATACTATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR TCA 72 bp ACTGACTTTAGCTCAGTTTGTAAGCCAAGCTGGCTTTaGATTTGTAATGGATCTCTGCCTTCCAGGTGCTCA +
Preference number: 3 (lower is better)
Translates to: TDFSSVCKPSWL*ICNGSLPSRCS
Trigger: TGAGCACCTGGAAGGCAGAGATCCATTACAAATTCAAAGCCAGCTTGGCTTACAAACTGAGCTAAAGTCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR TCA 72 bp GTGGGTTCTACCATTGCTGTATTATTCACTGGTGGCTaGACACAACTGAGCATGTATTATTCTTTACCTGCT +
Preference number: 3 (lower is better)
Translates to: VGSTIAVLFTGG*TQLSMYYSLPA
Trigger: AGCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACAGCAATGGTAGAACCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR GCA 72 bp ACAAGCCCTGAAATGCAGAGTTGTCTCTTCTGGGTTTaGTCCTTTTTATTTCAAGAACTCTTTCCCCAGATT +
Preference number: 3 (lower is better)
Translates to: TSPEMQSCLFWV*SFLFQELFPQI
Trigger: AATCTGGGGAAAGAGTTCTTGAAATAAAAAGGAGCAAACCCAGAAGAGACAACTCTGCATTTCAGGGCTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR TCA 72 bp GATCCACGAGGACAGGTCTATTCCTATTGCCCAGCATaGAGTGAACATCCAACAATTTGTATGAAACTTAAA +
Preference number: 3 (lower is better)
Translates to: DPRGQVYSYCPA*SEHPTICMKLK
Trigger: TTTAAGTTTCATACAAATTGTTGGATGTTCACTTCATGCTGGGCAATAGGAATAGACCTGTCCTCGTGGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR TCA 72 bp GAGGAGTCATTGCTTCTTTATGACATAGCAGGCAATTaGATACTTACGAAAAACATTGCATGCTTTTGCCGG +
Preference number: 3 (lower is better)
Translates to: EESLLLYDIAGN*ILTKNIACFCR
Trigger: CCGGCAAAAGCATGCAATGTTTTTCGTAAGTATTCAATTGCCTGCTATGTCATAAAGAAGCAATGACTCCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR TCA 72 bp CCATTGCTGTATTATTCACTGGTGGCTGAACACAACTaGGCATGTATTATTCTTTACCTGCTTCGTTTCCTT +
Preference number: 3 (lower is better)
Translates to: PLLYYSLVAEHN*ACIILYLLRFL
Trigger: AAGGAAACGAAGCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACAGCAATGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR GCA 72 bp GAACTTCTACATGCCCATCAATCTAGCTTCCGATACTaGTTCTTTACTATTTACTTTTTCCCAGAATACATG +
Preference number: 3 (lower is better)
Translates to: ELLHAHQSSFRY*FFTIYFFPEYM
Trigger: CATGTATTCTGGGAAAAAGTAAATAGTAAAGAAGCAGTATCGGAAGCTAGATTGATGGGCATGTAGAAGTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR CCA 72 bp GAGTTCTCTTTTGGTATTGATGAACCAAATGTCCGCTaGATAAAGCTAATCATTGATGAAACCATTGGAAGA +
Preference number: 3 (lower is better)
Translates to: EFSFGIDEPNVR*IKLIIDETIGR
Trigger: TCTTCCAATGGTTTCATCAATGATTAGCTTTATCCAGCGGACATTTGGTTCATCAATACCAAAAGAGAACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR TCA 72 bp ATCACTGGAAGATTAGGAGGAGTCATTGCTTCTTTATaGCATAGCAGGCAATTGAATACTTACGAAAAACAT +
Preference number: 3 (lower is better)
Translates to: ITGRLGGVIASL*HSRQLNTYEKH
Trigger: ATGTTTTTCGTAAGTATTCAATTGCCTGCTATGTCATAAAGAAGCAATGACTCCTCCTAATCTTCCAGTGAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR GCA 72 bp AAGGCCTTATGTGACAATCTTTTATACAATTTCCAGTaGTCTCTAGTACTTCCTAATGCCTTAAACCTGTTT +
Preference number: 3 (lower is better)
Translates to: KALCDNLLYNFQ*SLVLPNALNLF
Trigger: AAACAGGTTTAAGGCATTAGGAAGTACTAGAGAGCACTGGAAATTGTATAAAAGATTGTCACATAAGGCCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR TCA 90 bp ATCTCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTCGCCGGCACTTTTCCTaGGGTGCTCAGAGAGGTTCA +
Preference number: 4 (lower is better)
Translates to: ISIGEYHCCCCCCCCFAIRRHFS*GAQRGS
Trigger: TGAACCTCTCTGAGCACCTCAGGAAAAGTGCCGGCG...AATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
3UTR CAA 72 bp GTGCTCCAGGATGATATCTACCTAATACTGCAGAGTTaGGGACATACTAGACAGGGAAATACCCTTCCTTGC +
Preference number: 4 (lower is better)
Translates to: VLQDDIYLILQS*GHTRQGNTLPC
Trigger: GCAAGGAAGGGTATTTCCCTGTCTAGTATGTCCCAAACTCTGCAGTATTAGGTAGATATCATCCTGGAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp TTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGTATACAATTCCTATCCCACTaGGGCCTCCAGCCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: FQMNYHPVTIDRLFGHSIQFLSH*GLQPSQ
Trigger: CTGGGAAGGCTGGAGGCCCCAGTGGGATAGGAATTG...TATACTATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR TCA 90 bp TGTATTATTCACTGGTGGCTGAACACAACTGAGCATGTATTATTCTTTACCTGCTGGAGATTTGGAGAGTaGGATCTGCAGGAGTCTCCA +
Preference number: 4 (lower is better)
Translates to: CIIHWWLNTTEHVLFFTCWRFGE*DLQESP
Trigger: TGGAGACTCCTGCAGATCTCACTCTCCAAATCTCCA...GCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp TTAAACAGTGGGTTCTACCATTGCTGTATTATTCACTGGTGGCTGAACACAACTGCACTTTTCCTGAGGTaGTCAGAGAGGTTCACTTTC +
Preference number: 4 (lower is better)
Translates to: LNSGFYHCCIIHWWLNTTALFLR*SERFTF
Trigger: GAAAGTGAACCTCTCTGAGCACCTCAGGAAAAGTGC...AGTTGTGTTCAGCCACCAGTGAATAATACAGCAATGGTAGAACCCACTGTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp TGTATTATTCACTGGTGGCTGAACACAACTGAGCATGTATTATTCTTTACCTGCCAAAGTGACAGCATCTaGAATGTCGCCGGCACTTTT +
Preference number: 4 (lower is better)
Translates to: CIIHWWLNTTEHVLFFTCQSDSI*NVAGTF
Trigger: AAAAGTGCCGGCGACATTGCAGATGCTGTCACTTTG...GCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp TGTATTATTCACTGGTGGCTGAACACAACTGAGCATGTATTATTCTTTACCTGCTCTCACTTTTGTTTCTaGCCAGTCAGGATGGTGGTG +
Preference number: 4 (lower is better)
Translates to: CIIHWWLNTTEHVLFFTCSHFCF*PVRMVV
Trigger: CACCACCATCCTGACTGGGCAGAAACAAAAGTGAGA...GCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp TACAATTTCCAGTGCTCTCTAGTACTTCCTAATGCCTTAAACCTGTTTTCTCTTTCCTGCTGCTCCCAATaGAGCACTTTCGCCAATTGT +
Preference number: 4 (lower is better)
Translates to: YNFQCSLVLPNALNLFSLSCCSQ*STFANC
Trigger: ACAATTGGCGAAAGTGCTGCATTGGGAGCAGCAGGA...AAGAGAAAACAGGTTTAAGGCATTAGGAAGTACTAGAGAGCACTGGAAATTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp TTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGTATATTGGAGAGTGAGATCTaGAGGAGTCTCCATGCCAGC +
Preference number: 4 (lower is better)
Translates to: FQMNYHPVTIDRLFGHSILESEI*RSLHAS
Trigger: GCTGGCATGGAGACTCCTGCAGATCTCACTCTCCAA...TATACTATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp TCTCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTCCTGTGTAGAACTCTaGATTTATCCGGTAATCATA +
Preference number: 4 (lower is better)
Translates to: SPSVSIIVAAAAAVVLLLSCVEL*IYPVII
Trigger: TATGATTACCGGATAAATCCAGAGTTCTACACAGGA...CAATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR TCA 90 bp ATCTCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTTCTGAAACCCTTCTTTaGCACATAATTCTTATGGCT +
Preference number: 4 (lower is better)
Translates to: ISIGEYHCCCCCCCCFAISETLL*HIILMA
Trigger: AGCCATAAGAATTATGTGTCAAAGAAGGGTTTCAGA...AATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp TCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTTATACCCGAGTTCCTTTaGATAAAATACGGTAATAGT +
Preference number: 4 (lower is better)
Translates to: SIGEYHCCCCCCCCFAIVIPEFL*IKYGNS
Trigger: ACTATTACCGTATTTTATCCAAAGGAACTCGGGTAT...AACAATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp ATCTCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTGAAGGCTAGCGAGTaGTTTTTATATATCATTCTA +
Preference number: 4 (lower is better)
Translates to: ISIGEYHCCCCCCCCFAIVKASE*FLYIIL
Trigger: TAGAATGATATATAAAAACCACTCGCTAGCCTTCAC...AATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp TGTATTATTCACTGGTGGCTGAACACAACTGAGCATGTATTATTCTTTACCTGCGTTCTTTTGGAGATTTaGAGAGTGAGATCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: CIIHWWLNTTEHVLFFTCVLLEI*RVRSAG
Trigger: TCCTGCAGATCTCACTCTCCAAATCTCCAAAAGAAC...GCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR TCA 90 bp GAAAATTTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATGCCAACAATAACTGCTaGATTCAATCCACTTGCAGG +
Preference number: 4 (lower is better)
Translates to: ENFQMNYHPVTIDRLFGHANNNC*IQSTCR
Trigger: CCTGCAAGTGGATTGAATTCAGCAGTTATTGTTGGC...ATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAAATTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp CTCCCTGATAGTGTTGACCTAATTCATCTGTTATCTGATTTTCTCACTATAAAGCTTTCGCCAATTGTGTaGACTAAATCCTCCTCTGAG +
Preference number: 4 (lower is better)
Translates to: LPDSVDLIHLLSDFLTIKLSPIV*TKSSSE
Trigger: CTCAGAGGAGGATTTAGTGCACACAATTGGCGAAAG...CTTTATAGTGAGAAAATCAGATAACAGATGAATTAGGTCAACACTATCAGGGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp TTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGTATACCACAATATTATTCCTaGTGCTCCCAATGCAGCACT +
Preference number: 4 (lower is better)
Translates to: FQMNYHPVTIDRLFGHSIPQYYS*CSQCST
Trigger: AGTGCTGCATTGGGAGCAGCAGGAATAATATTGTGG...TATACTATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR TCA 90 bp CTCCCTGATAGTGTTGACCTAATTCATCTGTTATCTGATTTTCTCACTATAAAGCTGTTACATAGATTTTaGCTACAGAGCTTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: LPDSVDLIHLLSDFLTIKLLHRF*LQSFAA
Trigger: GGCAGCAAAGCTCTGTAGTCAAAATCTATGTAACAG...CTTTATAGTGAGAAAATCAGATAACAGATGAATTAGGTCAACACTATCAGGGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp TTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGTATACAATATTATTCCTGCTaGTCCCAATGCAGCACTTTC +
Preference number: 4 (lower is better)
Translates to: FQMNYHPVTIDRLFGHSIQYYSC*SQCSTF
Trigger: GAAAGTGCTGCATTGGGAGCAGCAGGAATAATATTG...TATACTATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR GCA 90 bp TTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGTATATTGACTACAGAGCTTTaGTGCCGATGTTACATTGAG +
Preference number: 4 (lower is better)
Translates to: FQMNYHPVTIDRLFGHSILTTEL*CRCYIE
Trigger: CTCAATGTAACATCGGCAGCAAAGCTCTGTAGTCAA...TATACTATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp TGTATTATTCACTGGTGGCTGAACACAACTGAGCATGTATTATTCTTTACCTGCGAAAATTTCATCATCTaGGCAACTTCCTGTGTAGAA +
Preference number: 4 (lower is better)
Translates to: CIIHWWLNTTEHVLFFTCENFII*ATSCVE
Trigger: TTCTACACAGGAAGTTGCCCAGATGATGAAATTTTC...GCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp TTAATACTTAATATCTGCCTTTCCTGCTTTACTAGGAGTAGTTCAGTGTCTGAGCATAGCCACATGAGTTaGTCATTGCGGAAAATTTCA +
Preference number: 4 (lower is better)
Translates to: LILNICLSCFTRSSSVSEHSHMS*SLRKIS
Trigger: TGAAATTTTCCGCAATGACCAACTCATGTGGCTATG...CTCAGACACTGAACTACTCCTAGTAAAGCAGGAAAGGCAGATATTAAGTATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp TTAATACTTAATATCTGCCTTTCCTGCTTTACTAGGAGTAGTTCAGTGTCTGAGTTTTCAAATTCTTTCTaGGCAGCTGTTCTCACTTTT +
Preference number: 4 (lower is better)
Translates to: LILNICLSCFTRSSSVSEFSNSF*AAVLTF
Trigger: AAAAGTGAGAACAGCTGCCCAGAAAGAATTTGAAAA...CTCAGACACTGAACTACTCCTAGTAAAGCAGGAAAGGCAGATATTAAGTATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CCA 90 bp GAAAATTTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATTTCTCTTCTCTTCAGTaGTTTCAAGGAAAAATTGCC +
Preference number: 4 (lower is better)
Translates to: ENFQMNYHPVTIDRLFGHFSSLQ*FQGKIA
Trigger: GGCAATTTTTCCTTGAAACCACTGAAGAGAAGAGAA...ATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAAATTTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS GCA 90 bp GAAAGGATGGTCCTTGATCACAGGAGGCATTGCGGGTTTCAGAGCTaGCGGAGCGACCAGAAGGACGAAGAGCACCAGTTCACCAAGCTG +
Preference number: 5 (lower is better)
Translates to: ERMVLDHRRHCGFQS*RSDQKDEEHQFTKL
Trigger: CAGCTTGGTGAACTGGTGCTCTTCGTCCTTCTGGTCGCTCCGGCAGCTCTGAAACCCGCAATGCCTCCTGTGATCAAGGACCATCCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS GCA 90 bp GGCCCAGAAAACGTTGAAAGGATGGTCCTTGATCACAGGAGGCATTaGGGGTTTCAGAGCTGCCGGAGCGACCAGAAGGACGAAGAGCAC +
Preference number: 5 (lower is better)
Translates to: GPENVERMVLDHRRH*GFQSCRSDQKDEEH
Trigger: GTGCTCTTCGTCCTTCTGGTCGCTCCGGCAGCTCTGAAACCCGCAATGCCTCCTGTGATCAAGGACCATCCTTTCAACGTTTTCTGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS GCA 90 bp GTCTATAACAGCAAGTCCTTCCGATCTCCACAAAGTGACAGCATCTaGAATGTCGCCGGCACTTTTCCTGAGGTGCTCAGAGAGGTTCAC +
Preference number: 5 (lower is better)
Translates to: VYNSKSFRSPQSDSI*NVAGTFPEVLREVH
Trigger: GTGAACCTCTCTGAGCACCTCAGGAAAAGTGCCGGCGACATTGCAGATGCTGTCACTTTGTGGAGATCGGAAGGACTTGCTGTTATAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 90 bp GTTTCTGCCCAGTCAGGATGGTGGTGTCGAGTGAAGGCTAGCGAGTaGTTTTTATATATCATTCTACTGCCCCAATTCCTATCCCACTGG +
Preference number: 5 (lower is better)
Translates to: VSAQSGWWCRVKASE*FLYIILLPQFLSHW
Trigger: CCAGTGGGATAGGAATTGGGGCAGTAGAATGATATATAAAAACCACTCGCTAGCCTTCACTCGACACCACCATCCTGACTGGGCAGAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp ATCTCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTTGTTCTTTTGGAGATTaGGAGAGTGAGATCTGCAGG +
Preference number: 5 (lower is better)
Translates to: ISIGEYHCCCCCCCCFAICSFGD*ESEICR
Trigger: CCTGCAGATCTCACTCTCCAAATCTCCAAAAGAACA...AATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS TCA 90 bp TGTTACATAGATTTTGACTACAGAGCTTTGCTGCCGATGTTACATTaGGAACATAGGGACCCAATAGCCCATGAACAGTTTGTCTCACAG +
Preference number: 5 (lower is better)
Translates to: CYIDFDYRALLPMLH*EHRDPIAHEQFVSQ
Trigger: CTGTGAGACAAACTGTTCATGGGCTATTGGGTCCCTATGTTCTCAATGTAACATCGGCAGCAAAGCTCTGTAGTCAAAATCTATGTAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 90 bp GGATGTTCCATCTTCAGAGAAATAAGGGTAATACCCGAGTTCCTTTaGATAAAATACGGTAATAGTGGATCCACTCTGAGTTTCGAAAGG +
Preference number: 5 (lower is better)
Translates to: GCSIFREIRVIPEFL*IKYGNSGSTLSFER
Trigger: CCTTTCGAAACTCAGAGTGGATCCACTATTACCGTATTTTATCCAAAGGAACTCGGGTATTACCCTTATTTCTCTGAAGATGGAACATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp GAAAATTTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATTTGAAAGGATGGTCCTaGATCACAGGAGGCATTGCG +
Preference number: 5 (lower is better)
Translates to: ENFQMNYHPVTIDRLFGHLKGWS*ITGGIA
Trigger: CGCAATGCCTCCTGTGATCAAGGACCATCCTTTCAA...ATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAAATTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp TACAATTTCCAGTGCTCTCTAGTACTTCCTAATGCCTTAAACCTGTTTTCTCTTCAGCTGTTCTCACTTTaGTTTCTGCCCAGTCAGGAT +
Preference number: 5 (lower is better)
Translates to: YNFQCSLVLPNALNLFSLQLFSL*FLPSQD
Trigger: ATCCTGACTGGGCAGAAACAAAAGTGAGAACAGCTG...AAGAGAAAACAGGTTTAAGGCATTAGGAAGTACTAGAGAGCACTGGAAATTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp TCCATCGGTGAGTATCATTGTTGCTGCTGCTGCTGCTGTTGTTTTGCTATTGTTTCTTCATATTCATTATaGTCTTCAGCTTACTTGGGG +
Preference number: 5 (lower is better)
Translates to: SIGEYHCCCCCCCCFAIVSSYSL*SSAYLG
Trigger: CCCCAAGTAAGCTGAAGACAATAATGAATATGAAGA...AACAATAGCAAAACAACAGCAGCAGCAGCAGCAACAATGATACTCACCGATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp CTCCCTGATAGTGTTGACCTAATTCATCTGTTATCTGATTTTCTCACTATAAAGCAGCACTTTCGCCAATaGTGTGCACTAAATCCTCCT +
Preference number: 5 (lower is better)
Translates to: LPDSVDLIHLLSDFLTIKQHFRQ*CALNPP
Trigger: AGGAGGATTTAGTGCACACAATTGGCGAAAGTGCTG...CTTTATAGTGAGAAAATCAGATAACAGATGAATTAGGTCAACACTATCAGGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp GAAAATTTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGCCCCATAAACGCTTaGGTCTCATTTCTAAAGCCA +
Preference number: 5 (lower is better)
Translates to: ENFQMNYHPVTIDRLFGHSPINA*VSFLKP
Trigger: TGGCTTTAGAAATGAGACCAAAGCGTTTATGGGGCT...ATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAAATTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp TGTATTATTCACTGGTGGCTGAACACAACTGAGCATGTATTATTCTTTACCTGCCTGAATTCAATCCACTaGCAGGAGCTTTGTTCTTTT +
Preference number: 5 (lower is better)
Translates to: CIIHWWLNTTEHVLFFTCLNSIH*QELCSF
Trigger: AAAAGAACAAAGCTCCTGCAAGTGGATTGAATTCAG...GCAGGTAAAGAATAATACATGCTCAGTTGTGTTCAGCCACCAGTGAATAATACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 90 bp ATTGCGGAAAATTTCATCATCTGGGCAACTTCCTGTGTAGAACTCTaGATTTATCCGGTAATCATAATTGTAGCAATCTGGATAGAGATA +
Preference number: 5 (lower is better)
Translates to: IAENFIIWATSCVEL*IYPVIIIVAIWIEI
Trigger: TATCTCTATCCAGATTGCTACAATTATGATTACCGGATAAATCCAGAGTTCTACACAGGAAGTTGCCCAGATGATGAAATTTTCCGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp TACAATTTCCAGTGCTCTCTAGTACTTCCTAATGCCTTAAACCTGTTTTCTCTTCACATGAGTTGGTCATaGCGGAAAATTTCATCATCT +
Preference number: 5 (lower is better)
Translates to: YNFQCSLVLPNALNLFSLHMSWS*RKISSS
Trigger: AGATGATGAAATTTTCCGCAATGACCAACTCATGTG...AAGAGAAAACAGGTTTAAGGCATTAGGAAGTACTAGAGAGCACTGGAAATTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS-3UTR CAA 90 bp GAAAATTTTCAAATGAATTACCATCCAGTGACAATTGACAGACTGTTTGGGCATAGGAGCTTTGTTCTTTaGGAGATTTGGAGAGTGAGA +
Preference number: 5 (lower is better)
Translates to: ENFQMNYHPVTIDRLFGHRSFVL*EIWRVR
Trigger: TCTCACTCTCCAAATCTCCAAAAGAACAAAGCTCCT...ATGCCCAAACAGTCTGTCAATTGTCACTGGATGGTAATTCATTTGAAAATTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS GCA 72 bp GTCCTTGATCACAGGAGGCATTGCGGGTTTCAGAGCTaGCGGAGCGACCAGAAGGACGAAGAGCACCAGTTC +
Preference number: 6 (lower is better)
Translates to: VLDHRRHCGFQS*RSDQKDEEHQF
Trigger: GAACTGGTGCTCTTCGTCCTTCTGGTCGCTCCGGCAGCTCTGAAACCCGCAATGCCTCCTGTGATCAAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CAA 72 bp GTAGGGGCGGCCCAGAAAACGTTGAAAGGATGGTCCTaGATCACAGGAGGCATTGCGGGTTTCAGAGCTGCC +
Preference number: 6 (lower is better)
Translates to: VGAAQKTLKGWS*ITGGIAGFRAA
Trigger: GGCAGCTCTGAAACCCGCAATGCCTCCTGTGATCAAGGACCATCCTTTCAACGTTTTCTGGGCCGCCCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS GCA 72 bp AACGTTGAAAGGATGGTCCTTGATCACAGGAGGCATTaGGGGTTTCAGAGCTGCCGGAGCGACCAGAAGGAC +
Preference number: 6 (lower is better)
Translates to: NVERMVLDHRRH*GFQSCRSDQKD
Trigger: GTCCTTCTGGTCGCTCCGGCAGCTCTGAAACCCGCAATGCCTCCTGTGATCAAGGACCATCCTTTCAACGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 72 bp AACAAAGTAGGGGCGGCCCAGAAAACGTTGAAAGGATaGTCCTTGATCACAGGAGGCATTGCGGGTTTCAGA +
Preference number: 6 (lower is better)
Translates to: NKVGAAQKTLKG*SLITGGIAGFR
Trigger: TCTGAAACCCGCAATGCCTCCTGTGATCAAGGACCATCCTTTCAACGTTTTCTGGGCCGCCCCTACTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 72 bp CAATCCACTTGCAGGAGCTTTGTTCTTTTGGAGATTTaGAGAGTGAGATCTGCAGGAGTCTCCATGCCAGCC +
Preference number: 6 (lower is better)
Translates to: QSTCRSFVLLEI*RVRSAGVSMPA
Trigger: GGCTGGCATGGAGACTCCTGCAGATCTCACTCTCCAAATCTCCAAAAGAACAAAGCTCCTGCAAGTGGATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 72 bp GCTGTTCTCACTTTTGTTTCTGCCCAGTCAGGATGGTaGTGTCGAGTGAAGGCTAGCGAGTGGTTTTTATAT +
Preference number: 6 (lower is better)
Translates to: AVLTFVSAQSGW*CRVKASEWFLY
Trigger: ATATAAAAACCACTCGCTAGCCTTCACTCGACACCACCATCCTGACTGGGCAGAAACAAAAGTGAGAACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 72 bp CAGTCAGGATGGTGGTGTCGAGTGAAGGCTAGCGAGTaGTTTTTATATATCATTCTACTGCCCCAATTCCTA +
Preference number: 6 (lower is better)
Translates to: QSGWWCRVKASE*FLYIILLPQFL
Trigger: TAGGAATTGGGGCAGTAGAATGATATATAAAAACCACTCGCTAGCCTTCACTCGACACCACCATCCTGACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS TCA 72 bp CTTTTGTTTCTGCCCAGTCAGGATGGTGGTGTCGAGTaGAGGCTAGCGAGTGGTTTTTATATATCATTCTAC +
Preference number: 6 (lower is better)
Translates to: LLFLPSQDGGVE*RLASGFYISFY
Trigger: GTAGAATGATATATAAAAACCACTCGCTAGCCTTCACTCGACACCACCATCCTGACTGGGCAGAAACAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 72 bp CCACATGAGTTGGTCATTGCGGAAAATTTCATCATCTaGGCAACTTCCTGTGTAGAACTCTGGATTTATCCG +
Preference number: 6 (lower is better)
Translates to: PHELVIAENFII*ATSCVELWIYP
Trigger: CGGATAAATCCAGAGTTCTACACAGGAAGTTGCCCAGATGATGAAATTTTCCGCAATGACCAACTCATGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS TCA 72 bp ACTTGGGGAGGGAATGACAAATCTGAAACCCTTCTTTaGCACATAATTCTTATGGCTATCCTCAGGCATATG +
Preference number: 6 (lower is better)
Translates to: TWGGNDKSETLL*HIILMAILRHM
Trigger: CATATGCCTGAGGATAGCCATAAGAATTATGTGTCAAAGAAGGGTTTCAGATTTGTCATTCCCTCCCCAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CAA 90 bp CCAATAGCCCATGAACAGTTTGTCTCACAGATAAGCAAGTCTCCTTaGTATCCGAATATTCATATCCTCCCCACAATATTATTCCTGCTG +
Preference number: 6 (lower is better)
Translates to: PIAHEQFVSQISKSP*YPNIHILPTILFLL
Trigger: CAGCAGGAATAATATTGTGGGGAGGATATGAATATTCGGATACAAAGGAGACTTGCTTATCTGTGAGACAAACTGTTCATGGGCTATTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 72 bp ATCTTCAGAGAAATAAGGGTAATACCCGAGTTCCTTTaGATAAAATACGGTAATAGTGGATCCACTCTGAGT +
Preference number: 6 (lower is better)
Translates to: IFREIRVIPEFL*IKYGNSGSTLS
Trigger: ACTCAGAGTGGATCCACTATTACCGTATTTTATCCAAAGGAACTCGGGTATTACCCTTATTTCTCTGAAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6
CDS CCA 72 bp AATTTCATCATCTGGGCAACTTCCTGTGTAGAACTCTaGATTTATCCGGTAATCATAATTGTAGCAATCTGG +
Preference number: 6 (lower is better)
Translates to: NFIIWATSCVEL*IYPVIIIVAIW
Trigger: CCAGATTGCTACAATTATGATTACCGGATAAATCCAGAGTTCTACACAGGAAGTTGCCCAGATGATGAAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031690.6