Pregenerated sensors for HYAL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036091Ensembl transcript IDs: ENSMUST00000040059.9, ENSMUST00000148440.8, ENSMUST00000149487.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTTGTATTGGTaGAAGTGGGATATGTACTTGGGAAAGTCCCATAAGCTAAACAAA | + |
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Preference number: 1 (lower is better) Translates to: PPCPAPQEFLWKLYW*KWDMYLGKSHKLNK Trigger: TTTGTTTAGCTTATGGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| 3UTR CAA 90 bp | AGGCGTGCGCCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTaGTATTGGTGGAAGTGGGATATGTACTTGGGAAAGTCCCATAAG | + |
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Preference number: 2 (lower is better) Translates to: RRAPPCPAPQEFLWK*YWWKWDMYLGKSHK Trigger: CTTATGGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGGCGCACGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| 3UTR-3UTR CAA 90 bp | CAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGGAGAATTTCTATGGAAGTaGTATTGGTGGAAGTGGGAT | + |
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Preference number: 3 (lower is better) Translates to: QAGLELRNRPASASRVLGEFLWK*YWWKWD Trigger: ATCCCACTTCCACCAATACAACTTCCATAGAAATTC...TCCCAGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| 3UTR CCA 72 bp | CGTGCGCCACCATGCCCGGCTCCTCAGGAATTTCTATaGAAGTTGTATTGGTGGAAGTGGGATATGTACTTG | + |
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Preference number: 3 (lower is better) Translates to: RAPPCPAPQEFL*KLYWWKWDMYL Trigger: CAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGGCGCACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| 3UTR CCA 72 bp | CCGGCTCCTCAGGAATTTCTATGGAAGTTGTATTGGTaGAAGTGGGATATGTACTTGGGAAAGTCCCATAAG | + |
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Preference number: 3 (lower is better) Translates to: PAPQEFLWKLYW*KWDMYLGKSHK Trigger: CTTATGGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTCCTGAGGAGCCGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR TCA 90 bp | CAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGGATTGTGGAGCTGTTCCTaGGGATCCAAGCCAGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: QAGLELRNRPASASRVLGLWSCS*GSKPGN Trigger: GTTCCCTGGCTTGGATCCTCAGGAACAGCTCCACAA...TCCCAGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR CCA 90 bp | ATCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGCTGTGTAGGATCTGGTaGGCAGCTCGTGCCAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: IRLASNSEIGLPLPPECWLCRIW*AARAKW Trigger: CCACTTGGCACGAGCTGCCCACCAGATCCTACACAG...CCAGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | ATCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGAGTGCACGGGCAGCCTaGTCAAAGCTAGTATGGGCT | + |
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Preference number: 4 (lower is better) Translates to: IRLASNSEIGLPLPPECWSARAA*SKLVWA Trigger: AGCCCATACTAGCTTTGAGCAGGCTGCCCGTGCACT...CCAGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR CCA 90 bp | AGATCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGCTTCCATTTGTCCTaGGTCTTTCCGGGCACATCG | + |
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Preference number: 4 (lower is better) Translates to: RSGWPRTQKSACLCLPSAGFHLS*VFPGTS Trigger: CGATGTGCCCGGAAAGACCCAGGACAAATGGAAGCC...AGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTGATCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR TCA 90 bp | ATCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGGAGATGTTTTGGCCGTaGAAATGTTGGCCGTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: IRLASNSEIGLPLPPECWEMFWP*KCWPWL Trigger: CAACCACGGCCAACATTTTCACGGCCAAAACATCTC...CCAGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | CAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGGATCTTATGCCAGCCATTaGCACAGGCTGGATATCTGT | + |
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Preference number: 4 (lower is better) Translates to: QAGLELRNRPASASRVLGSYASH*HRLDIC Trigger: ACAGATATCCAGCCTGTGGCAATGGCTGGCATAAGA...TCCCAGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | CAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGGAAGACTGTCATCTGGCTaGAGATGTAGAAAGGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: QAGLELRNRPASASRVLGRLSSG*RCRKAS Trigger: GGAAGCCTTTCTACATCTGCAGCCAGATGACAGTCT...TCCCAGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | AAGGCGTGCGCCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTTGTATTGGACATCGCTGGTGACTaGAAGCCATGGCAGCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: KACATMPGSSGISMEVVLDIAGD*KPWQPW Trigger: CCAAGGCTGCCATGGCTTGCAGTCACCAGCGATGTC...CAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGGCGCACGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR CCA 90 bp | GGCGTGCGCCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTTGTATTGGTGTTCCCAGCCCAGAGTaGGTACCATTCTTCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: GVRHHARLLRNFYGSCIGVPSPE*VPFFPV Trigger: GACTGGGAAGAATGGTACCCACTCTGGGCTGGGAAC...ACCAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGGCGCACGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | AAGGCGTGCGCCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTTGTATTGCCAAACCCAGGAGGCTaGCAGGTAGACTTGTCGATG | + |
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Preference number: 4 (lower is better) Translates to: KACATMPGSSGISMEVVLPNPGG*QVDLSM Trigger: CATCGACAAGTCTACCTGGCAGCCTCCTGGGTTTGG...CAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGGCGCACGCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | GGCGTGCGCCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTTGTATTGGTAGCAAAGCTTGGCCATaGATCAGGCACAGGGTTAAC | + |
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Preference number: 4 (lower is better) Translates to: GVRHHARLLRNFYGSCIGSKAWP*IRHRVN Trigger: GTTAACCCTGTGCCTGATGCATGGCCAAGCTTTGCT...ACCAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGGCGCACGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR TCA 90 bp | GATGTGTGTTGGGAGGCATGTAGGGGTTGTCTGAACCTAGATTTTACTTCTCTAGGGTGTTTCGGGTGGTaGTGGCTGCATGGCAGTGGC | + |
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Preference number: 4 (lower is better) Translates to: DVCWEACRGCLNLDFTSLGCFGW*WLHGSG Trigger: GCCACTGCCATGCAGCCATCACCACCCGAAACACCC...TAGAGAAGTAAAATCTAGGTTCAGACAACCCCTACATGCCTCCCAACACACATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR TCA 90 bp | GCTAAACAAAGCATAAAGGGGAATTCCTCTAGGACTGGGAAAATGACAGCAGGGTCTAAGGACACAGCCTaGGGGATTCCCCCATTGTGG | + |
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Preference number: 4 (lower is better) Translates to: AKQSIKGNSSRTGKMTAGSKDTA*GIPPLW Trigger: CCACAATGGGGGAATCCCTCAGGCTGTGTCCTTAGA...CCCTGCTGTCATTTTCCCAGTCCTAGAGGAATTCCCCTTTATGCTTTGTTTAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR CCA 90 bp | GATGTGTGTTGGGAGGCATGTAGGGGTTGTCTGAACCTAGATTTTACTTCTCTAACCTGCAGCAAAGCTTaGCCATGCATCAGGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: DVCWEACRGCLNLDFTSLTCSKA*PCIRHR Trigger: CCTGTGCCTGATGCATGGCCAAGCTTTGCTGCAGGT...TAGAGAAGTAAAATCTAGGTTCAGACAACCCCTACATGCCTCCCAACACACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR CCA 90 bp | AAGGCGTGCGCCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTTGTATTGGGTTCTTGTAGAAGATaGAGATGTTTTGGCCGTGAA | + |
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Preference number: 4 (lower is better) Translates to: KACATMPGSSGISMEVVLGSCRR*RCFGRE Trigger: TTCACGGCCAAAACATCTCCATCTTCTACAAGAACC...CAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGGCGCACGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| 3UTR CAA 72 bp | CCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTaGTATTGGTGGAAGTGGGATATGTACTTGGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: PPCPAPQEFLWK*YWWKWDMYLGK Trigger: CTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR TCA 90 bp | GCTAAACAAAGCATAAAGGGGAATTCCTCTAGGACTGGGAAAATGACAGCAGGGCAGCCTTGGTCACATTaGTCACATAGGGGCCTAAAG | + |
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Preference number: 4 (lower is better) Translates to: AKQSIKGNSSRTGKMTAGQPWSH*SHRGLK Trigger: CTTTAGGCCCCTATGTGATCAATGTGACCAAGGCTG...CCCTGCTGTCATTTTCCCAGTCCTAGAGGAATTCCCCTTTATGCTTTGTTTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | GATGTGTGTTGGGAGGCATGTAGGGGTTGTCTGAACCTAGATTTTACTTCTCTATTCCCAGTCCAGCACTaGCAAGCCAGCAAAGCTAGA | + |
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Preference number: 4 (lower is better) Translates to: DVCWEACRGCLNLDFTSLFPVQH*QASKAR Trigger: TCTAGCTTTGCTGGCTTGGCAGTGCTGGACTGGGAA...TAGAGAAGTAAAATCTAGGTTCAGACAACCCCTACATGCCTCCCAACACACATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | AATTTCTATGGAAGTTGTATTGGTGGAAGTGGGATATGTACTTGGGAAAGTCCCTCGGGTGGTGATGGCTaGATGGCAGTGGCCTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: NFYGSCIGGSGICTWESPSGGDG*MAVACV Trigger: TACACAGGCCACTGCCATGCAGCCATCACCACCCGA...GGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR CCA 90 bp | AATTTCTATGGAAGTTGTATTGGTGGAAGTGGGATATGTACTTGGGAAAGTCCCCTGACGGTAGGCAAGTaGCAGTCTGGGTGGGAGGTA | + |
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Preference number: 4 (lower is better) Translates to: NFYGSCIGGSGICTWESPLTVGK*QSGWEV Trigger: TACCTCCCACCCAGACTGCCACTTGCCTACCGTCAG...GGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | CCTCAGGAATTTCTATGGAAGTTGTATTGGTGGAAGTGGGATATGTACTTGGGAGGATGTTCAGGAACCTaGAGCAAAGCTTGGCCATGC | + |
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Preference number: 4 (lower is better) Translates to: PQEFLWKLYWWKWDMYLGGCSGT*SKAWPC Trigger: GCATGGCCAAGCTTTGCTGCAGGTTCCTGAACATCC...TCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTCCTGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR CCA 90 bp | CCTCAGGAATTTCTATGGAAGTTGTATTGGTGGAAGTGGGATATGTACTTGGGAAAGTGGCAGTCTGGGTaGGAGGTAGATGCTAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: PQEFLWKLYWWKWDMYLGKWQSG*EVDARE Trigger: TTCCCTAGCATCTACCTCCCACCCAGACTGCCACTT...TCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTCCTGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| 3UTR CAA 72 bp | ATGCCCGGCTCCTCAGGAATTTCTATGGAAGTTGTATaGGTGGAAGTGGGATATGTACTTGGGAAAGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: MPGSSGISMEVV*VEVGYVLGKVP Trigger: TGGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | AATTTCTATGGAAGTTGTATTGGTGGAAGTGGGATATGTACTTGGGAAAGTCCCGGTAGAGGGTGTGAATaGTCCAAAAGGGCTACACGG | + |
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Preference number: 4 (lower is better) Translates to: NFYGSCIGGSGICTWESPGRGCE*SKRATR Trigger: CCGTGTAGCCCTTTTGGAGCATTCACACCCTCTACC...GGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | GATGTGTGTTGGGAGGCATGTAGGGGTTGTCTGAACCTAGATTTTACTTCTCTACATAGGGGCCTAAAGTaGCCACTAAGTAGTCATGGA | + |
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Preference number: 4 (lower is better) Translates to: DVCWEACRGCLNLDFTSLHRGLK*PLSSHG Trigger: TCCATGACTACTTAGTGGGCACTTTAGGCCCCTATG...TAGAGAAGTAAAATCTAGGTTCAGACAACCCCTACATGCCTCCCAACACACATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | GAATTTCTATGGAAGTTGTATTGGTGGAAGTGGGATATGTACTTGGGAAAGTCCGCATCGAGAGGCAGATaGACACCAAAATGGGCCTTA | + |
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Preference number: 4 (lower is better) Translates to: EFLWKLYWWKWDMYLGKSASRGR*TPKWAL Trigger: TAAGGCCCATTTTGGTGTGCATCTGCCTCTCGATGC...GGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | AATTTCTATGGAAGTTGTATTGGTGGAAGTGGGATATGTACTTGGGAAAGTCCCAGTGTATTCCATGAGTaGACGGGCAGCCTGCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: NFYGSCIGGSGICTWESPSVFHE*TGSLLK Trigger: TTTGAGCAGGCTGCCCGTGCACTCATGGAATACACT...GGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS-3UTR GCA 90 bp | AATTTCTATGGAAGTTGTATTGGTGGAAGTGGGATATGTACTTGGGAAAGTCCCTTGGAAGCCATCTTATaGCAGCCATTGCCACAGGCT | + |
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Preference number: 4 (lower is better) Translates to: NFYGSCIGGSGICTWESPLEAIL*QPLPQA Trigger: AGCCTGTGGCAATGGCTGGCATAAGATGGCTTCCAA...GGGACTTTCCCAAGTACATATCCCACTTCCACCAATACAACTTCCATAGAAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS CCA 90 bp | GCGGTGTCGGACAAAGGCCTGACGGTAGGCAAGTGGCAGTCTGGGTaGGAGGTAGATGCTAGGGAAGAGAGCACTGGAGGCAGCCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: AVSDKGLTVGKWQSG*EVDAREESTGGSPE Trigger: CTCTGGGCTGCCTCCAGTGCTCTCTTCCCTAGCATCTACCTCCCACCCAGACTGCCACTTGCCTACCGTCAGGCCTTTGTCCGACACCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS GCA 90 bp | AGGATCCAAGCCAGGGAACATCTGCTGTGTCCAAACCCAGGAGGCTaGCAGGTAGACTTGTCGATGGGGGCCCCAGTTCCCAGCCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: RIQAREHLLCPNPGG*QVDLSMGAPVPSPE Trigger: CTCTGGGCTGGGAACTGGGGCCCCCATCGACAAGTCTACCTGGCAGCCTCCTGGGTTTGGACACAGCAGATGTTCCCTGGCTTGGATCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CCA 90 bp | GGCTTCCTCCAGGCGGTGTCGGACAAAGGCCTGACGGTAGGCAAGTaGCAGTCTGGGTGGGAGGTAGATGCTAGGGAAGAGAGCACTGGA | + |
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Preference number: 5 (lower is better) Translates to: GFLQAVSDKGLTVGK*QSGWEVDAREESTG Trigger: TCCAGTGCTCTCTTCCCTAGCATCTACCTCCCACCCAGACTGCCACTTGCCTACCGTCAGGCCTTTGTCCGACACCGCCTGGAGGAAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS-3UTR CAA 90 bp | CAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTGGGAAACCTGCAGCAAAGCTaGGCCATGCATCAGGCACAG | + |
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Preference number: 5 (lower is better) Translates to: QAGLELRNRPASASRVLGNLQQS*AMHQAQ Trigger: CTGTGCCTGATGCATGGCCAAGCTTTGCTGCAGGTT...TCCCAGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS TCA 90 bp | CACTGGAGGCAGCCCAGAGCCAACGCAGTTGGGTGTTTCGGGTGGTaGTGGCTGCATGGCAGTGGCCTGTGTAGTTGGAAGCCATCTTAT | + |
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Preference number: 5 (lower is better) Translates to: HWRQPRANAVGCFGW*WLHGSGLCSWKPSY Trigger: ATAAGATGGCTTCCAACTACACAGGCCACTGCCATGCAGCCATCACCACCCGAAACACCCAACTGCGTTGGCTCTGGGCTGCCTCCAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS TCA 90 bp | CGGGCAGCCTGCTCAAAGCTAGTATGGGCTTTGTGGAGCTGTTCCTaGGGATCCAAGCCAGGGAACATCTGCTGTGTCCAAACCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: RAACSKLVWALWSCS*GSKPGNICCVQTQE Trigger: CTCCTGGGTTTGGACACAGCAGATGTTCCCTGGCTTGGATCCTCAGGAACAGCTCCACAAAGCCCATACTAGCTTTGAGCAGGCTGCCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS GCA 90 bp | CATGGCAGTGGCCTGTGTAGTTGGAAGCCATCTTATGCCAGCCATTaGCACAGGCTGGATATCTGTAAAAGCCCCAGAGGCCACTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: HGSGLCSWKPSYASH*HRLDICKSPRGHSG Trigger: GCCCGAGTGGCCTCTGGGGCTTTTACAGATATCCAGCCTGTGGCAATGGCTGGCATAAGATGGCTTCCAACTACACAGGCCACTGCCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CCA 90 bp | GCCTGTGTAGTTGGAAGCCATCTTATGCCAGCCATTGCCACAGGCTaGATATCTGTAAAAGCCCCAGAGGCCACTCGGGCGAAGTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: ACVVGSHLMPAIATG*ISVKAPEATRAKCP Trigger: CGGACACTTCGCCCGAGTGGCCTCTGGGGCTTTTACAGATATCCAGCCTGTGGCAATGGCTGGCATAAGATGGCTTCCAACTACACAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS TCA 90 bp | GCATCAGGTCGTCCAGAGACAGGAATCTCCCAGAGCTCCGGTGTGTaGGGCGAGAATAAGCCAGAACAGGTAGAGGGTGTGAATGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: ASGRPETGISQSSGV*GENKPEQVEGVNAP Trigger: TGGAGCATTCACACCCTCTACCTGTTCTGGCTTATTCTCGCCTCACACACCGGAGCTCTGGGAGATTCCTGTCTCTGGACGACCTGATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 |
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| CDS TCA 90 bp | GCCAGCACTTTTCCAGAGACAGGAATCTCCCAGAGCTCCGGTGTGTaGGGCGAGAATAAGCCAGAACAGGTAGAGGGTGTGAATGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: ASTFPETGISQSSGV*GENKPEQVEGVNAP Trigger: TGGAGCATTCACACCCTCTACCTGTTCTGGCTTATTCTCGCCTCACACACCGGAGCTCTGGGAGATTCCTGTCTCTGGAAAAGTGCTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149487.2 |
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| CDS-3UTR CAA 90 bp | AGATCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTCCCGAGTGCTAATGGGCCTTACATCTaGCTGAGGGTACATTCCATA | + |
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Preference number: 5 (lower is better) Translates to: RSGWPRTQKSACLCLPSANGPYI*LRVHSI Trigger: TATGGAATGTACCCTCAGCAAGATGTAAGGCCCATT...AGCACTCGGGAGGCAGAGGCAGGCCGATTTCTGAGTTCGAGGCCAGCCTGATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS TCA 90 bp | CATGACATCGCTGGTGACTGCAAGCCATGGCAGCCTTGGTCACATTaGTCACATAGGGGCCTAAAGTGCCCACTAAGTAGTCATGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: HDIAGDCKPWQPWSH*SHRGLKCPLSSHGD Trigger: GTCTCCATGACTACTTAGTGGGCACTTTAGGCCCCTATGTGATCAATGTGACCAAGGCTGCCATGGCTTGCAGTCACCAGCGATGTCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 |
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| CDS GCA 90 bp | ACCACAGAAAAAGGATGTTCAGGAACCTGCAGCAAAGCTTGGCCATaGATCAGGCACAGGGTTAACCCCACCACCATCATTAGGCCTAGG | + |
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Preference number: 5 (lower is better) Translates to: TTEKGCSGTCSKAWP*IRHRVNPTTIIRPR Trigger: CCTAGGCCTAATGATGGTGGTGGGGTTAACCCTGTGCCTGATGCATGGCCAAGCTTTGCTGCAGGTTCCTGAACATCCTTTTTCTGTGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS GCA 90 bp | GCTGAGGGTACATTCCATACCACAGAAAAAGGATGTTCAGGAACCTaGAGCAAAGCTTGGCCATGCATCAGGCACAGGGTTAACCCCACC | + |
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Preference number: 5 (lower is better) Translates to: AEGTFHTTEKGCSGT*SKAWPCIRHRVNPT Trigger: GGTGGGGTTAACCCTGTGCCTGATGCATGGCCAAGCTTTGCTGCAGGTTCCTGAACATCCTTTTTCTGTGGTATGGAATGTACCCTCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS-3UTR CAA 90 bp | AAGGCGTGCGCCACCATGCCCGGCTCCTCAGGAATTTCTATGGAAGTTGTATTGTTGGCCGTGAAAATGTaGGCCGTGGTTGGCTACAAT | + |
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Preference number: 5 (lower is better) Translates to: KACATMPGSSGISMEVVLLAVKM*AVVGYN Trigger: ATTGTAGCCAACCACGGCCAACATTTTCACGGCCAA...CAATACAACTTCCATAGAAATTCCTGAGGAGCCGGGCATGGTGGCGCACGCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS GCA 90 bp | CAATGGCATCTGAAGGAATTCCAAGCTCCAAGACTGTCATCTGGCTaGAGATGTAGAAAGGCTTCCATTTGTCCTGGGTCTTTCCGGGCA | + |
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Preference number: 5 (lower is better) Translates to: QWHLKEFQAPRLSSG*RCRKASICPGSFRA Trigger: TGCCCGGAAAGACCCAGGACAAATGGAAGCCTTTCTACATCTGCAGCCAGATGACAGTCTTGGAGCTTGGAATTCCTTCAGATGCCATTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 |
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| CDS CCA 90 bp | TTCCATACCACAGAAAAAGGATGTTCAGGAACCTGCAGCAAAGCTTaGCCATGCATCAGGCACAGGGTTAACCCCACCACCATCATTAGG | + |
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Preference number: 5 (lower is better) Translates to: FHTTEKGCSGTCSKA*PCIRHRVNPTTIIR Trigger: CCTAATGATGGTGGTGGGGTTAACCCTGTGCCTGATGCATGGCCAAGCTTTGCTGCAGGTTCCTGAACATCCTTTTTCTGTGGTATGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS-3UTR CAA 90 bp | GCTAAACAAAGCATAAAGGGGAATTCCTCTAGGACTGGGAAAATGACAGCAGGGATCTTATGCCAGCCATaGCCACAGGCTGGATATCTG | + |
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Preference number: 5 (lower is better) Translates to: AKQSIKGNSSRTGKMTAGILCQP*PQAGYL Trigger: CAGATATCCAGCCTGTGGCAATGGCTGGCATAAGAT...CCCTGCTGTCATTTTCCCAGTCCTAGAGGAATTCCCCTTTATGCTTTGTTTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040059.9 |
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| CDS CAA 72 bp | CTGCTGTGTCCAAACCCAGGAGGCTGCCAGGTAGACTaGTCGATGGGGGCCCCAGTTCCCAGCCCAGAGTGG | + |
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Preference number: 6 (lower is better) Translates to: LLCPNPGGCQVD*SMGAPVPSPEW Trigger: CCACTCTGGGCTGGGAACTGGGGCCCCCATCGACAAGTCTACCTGGCAGCCTCCTGGGTTTGGACACAGCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS GCA 72 bp | GCCAGGGAACATCTGCTGTGTCCAAACCCAGGAGGCTaGCAGGTAGACTTGTCGATGGGGGCCCCAGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: AREHLLCPNPGG*QVDLSMGAPVP Trigger: GGGAACTGGGGCCCCCATCGACAAGTCTACCTGGCAGCCTCCTGGGTTTGGACACAGCAGATGTTCCCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CCA 72 bp | CAGGCGGTGTCGGACAAAGGCCTGACGGTAGGCAAGTaGCAGTCTGGGTGGGAGGTAGATGCTAGGGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: QAVSDKGLTVGK*QSGWEVDAREE Trigger: CTCTTCCCTAGCATCTACCTCCCACCCAGACTGCCACTTGCCTACCGTCAGGCCTTTGTCCGACACCGCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CAA 90 bp | AGGGAACATCTGCTGTGTCCAAACCCAGGAGGCTGCCAGGTAGACTaGTCGATGGGGGCCCCAGTTCCCAGCCCAGAGTGGGTACCATTC | + |
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Preference number: 6 (lower is better) Translates to: REHLLCPNPGGCQVD*SMGAPVPSPEWVPF Trigger: GAATGGTACCCACTCTGGGCTGGGAACTGGGGCCCCCATCGACAAGTCTACCTGGCAGCCTCCTGGGTTTGGACACAGCAGATGTTCCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS TCA 72 bp | CAGCCCAGAGCCAACGCAGTTGGGTGTTTCGGGTGGTaGTGGCTGCATGGCAGTGGCCTGTGTAGTTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: QPRANAVGCFGW*WLHGSGLCSWK Trigger: CTTCCAACTACACAGGCCACTGCCATGCAGCCATCACCACCCGAAACACCCAACTGCGTTGGCTCTGGGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CCA 72 bp | GACAAAGGCCTGACGGTAGGCAAGTGGCAGTCTGGGTaGGAGGTAGATGCTAGGGAAGAGAGCACTGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: DKGLTVGKWQSG*EVDAREESTGG Trigger: GCCTCCAGTGCTCTCTTCCCTAGCATCTACCTCCCACCCAGACTGCCACTTGCCTACCGTCAGGCCTTTGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS TCA 72 bp | GCAGCTCGTGCCAAGTGGTGGTCTAAGGACACAGCCTaGGGGATTCCCCCATTGTGGGCTGTACCTCTAGGT | + |
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Preference number: 6 (lower is better) Translates to: AARAKWWSKDTA*GIPPLWAVPLG Trigger: ACCTAGAGGTACAGCCCACAATGGGGGAATCCCTCAGGCTGTGTCCTTAGACCACCACTTGGCACGAGCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS TCA 72 bp | CGTCCAGAGACAGGAATCTCCCAGAGCTCCGGTGTGTaGGGCGAGAATAAGCCAGAACAGGTAGAGGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: RPETGISQSSGV*GENKPEQVEGV Trigger: CACACCCTCTACCTGTTCTGGCTTATTCTCGCCTCACACACCGGAGCTCTGGGAGATTCCTGTCTCTGGACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 |
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| CDS GCA 72 bp | CCAGCTGTTCCCAGTGCGGCACTCACTCCAATAGTCTaGATCAGGTCGTCCAGAGACAGGAATCTCCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: PAVPSAALTPIV*IRSSRDRNLPE Trigger: CTCTGGGAGATTCCTGTCTCTGGACGACCTGATGCAGACTATTGGAGTGAGTGCCGCACTGGGAACAGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 |
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| CDS CCA 72 bp | GTTGGAAGCCATCTTATGCCAGCCATTGCCACAGGCTaGATATCTGTAAAAGCCCCAGAGGCCACTCGGGCG | + |
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Preference number: 6 (lower is better) Translates to: VGSHLMPAIATG*ISVKAPEATRA Trigger: CGCCCGAGTGGCCTCTGGGGCTTTTACAGATATCCAGCCTGTGGCAATGGCTGGCATAAGATGGCTTCCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CCA 72 bp | CCAGCAAAGCTAGATCCTAGGCTGTGTAGGATCTGGTaGGCAGCTCGTGCCAAGTGGTGGTCTAAGGACACA | + |
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Preference number: 6 (lower is better) Translates to: PAKLDPRLCRIW*AARAKWWSKDT Trigger: TGTGTCCTTAGACCACCACTTGGCACGAGCTGCCCACCAGATCCTACACAGCCTAGGATCTAGCTTTGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CCA 72 bp | AAGCCAGCAAAGCTAGATCCTAGGCTGTGTAGGATCTaGTGGGCAGCTCGTGCCAAGTGGTGGTCTAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: KPAKLDPRLCRI*WAARAKWWSKD Trigger: GTCCTTAGACCACCACTTGGCACGAGCTGCCCACCAGATCCTACACAGCCTAGGATCTAGCTTTGCTGGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS TCA 72 bp | TTTCCAGAGACAGGAATCTCCCAGAGCTCCGGTGTGTaGGGCGAGAATAAGCCAGAACAGGTAGAGGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: FPETGISQSSGV*GENKPEQVEGV Trigger: CACACCCTCTACCTGTTCTGGCTTATTCTCGCCTCACACACCGGAGCTCTGGGAGATTCCTGTCTCTGGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149487.2 |
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| CDS GCA 72 bp | TGGTTGGCTACAATGCCGAGGGCATCGAGAGGCAGATaGACACCAAAATGGGCCTTACATCTTGCTGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: WLATMPRASRGR*TPKWALHLAEG Trigger: ACCCTCAGCAAGATGTAAGGCCCATTTTGGTGTGCATCTGCCTCTCGATGCCCTCGGCATTGTAGCCAACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS GCA 72 bp | AGCTGCAGAGTGTATTCCATGAGTGCACGGGCAGCCTaGTCAAAGCTAGTATGGGCTTTGTGGAGCTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: SCRVYSMSARAA*SKLVWALWSCS Trigger: GGAACAGCTCCACAAAGCCCATACTAGCTTTGAGCAGGCTGCCCGTGCACTCATGGAATACACTCTGCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS TCA 72 bp | GCTGGTGACTGCAAGCCATGGCAGCCTTGGTCACATTaGTCACATAGGGGCCTAAAGTGCCCACTAAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: AGDCKPWQPWSH*SHRGLKCPLSS Trigger: ACTACTTAGTGGGCACTTTAGGCCCCTATGTGATCAATGTGACCAAGGCTGCCATGGCTTGCAGTCACCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 |
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| CDS CCA 72 bp | ACAGAAAAAGGATGTTCAGGAACCTGCAGCAAAGCTTaGCCATGCATCAGGCACAGGGTTAACCCCACCACC | + |
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Preference number: 6 (lower is better) Translates to: TEKGCSGTCSKA*PCIRHRVNPTT Trigger: GGTGGTGGGGTTAACCCTGTGCCTGATGCATGGCCAAGCTTTGCTGCAGGTTCCTGAACATCCTTTTTCTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS TCA 72 bp | TGCTCAAAGCTAGTATGGGCTTTGTGGAGCTGTTCCTaGGGATCCAAGCCAGGGAACATCTGCTGTGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: CSKLVWALWSCS*GSKPGNICCVQ Trigger: TTGGACACAGCAGATGTTCCCTGGCTTGGATCCTCAGGAACAGCTCCACAAAGCCCATACTAGCTTTGAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS GCA 72 bp | AAAGGATGTTCAGGAACCTGCAGCAAAGCTTGGCCATaGATCAGGCACAGGGTTAACCCCACCACCATCATT | + |
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Preference number: 6 (lower is better) Translates to: KGCSGTCSKAWP*IRHRVNPTTII Trigger: AATGATGGTGGTGGGGTTAACCCTGTGCCTGATGCATGGCCAAGCTTTGCTGCAGGTTCCTGAACATCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CAA 72 bp | CTTGTAGAAGATGGAGATGTTTTGGCCGTGAAAATGTaGGCCGTGGTTGGCTACAATGCCGAGGGCATCGAG | + |
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Preference number: 6 (lower is better) Translates to: LVEDGDVLAVKM*AVVGYNAEGIE Trigger: CTCGATGCCCTCGGCATTGTAGCCAACCACGGCCAACATTTTCACGGCCAAAACATCTCCATCTTCTACAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CAA 90 bp | AAACTGGTTCTTGTAGAAGATGGAGATGTTTTGGCCGTGAAAATGTaGGCCGTGGTTGGCTACAATGCCGAGGGCATCGAGAGGCAGATG | + |
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Preference number: 6 (lower is better) Translates to: KLVLVEDGDVLAVKM*AVVGYNAEGIERQM Trigger: CATCTGCCTCTCGATGCCCTCGGCATTGTAGCCAACCACGGCCAACATTTTCACGGCCAAAACATCTCCATCTTCTACAAGAACCAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS GCA 72 bp | CTGAAGGAATTCCAAGCTCCAAGACTGTCATCTGGCTaGAGATGTAGAAAGGCTTCCATTTGTCCTGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: LKEFQAPRLSSG*RCRKASICPGS Trigger: AGACCCAGGACAAATGGAAGCCTTTCTACATCTGCAGCCAGATGACAGTCTTGGAGCTTGGAATTCCTTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 |
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| CDS CAA 90 bp | GTAAGGATAAAGACCAAACTGGTTCTTGTAGAAGATGGAGATGTTTaGGCCGTGAAAATGTTGGCCGTGGTTGGCTACAATGCCGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: VRIKTKLVLVEDGDV*AVKMLAVVGYNAEG Trigger: GCCCTCGGCATTGTAGCCAACCACGGCCAACATTTTCACGGCCAAAACATCTCCATCTTCTACAAGAACCAGTTTGGTCTTTATCCTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CAA 72 bp | AAGACCAAACTGGTTCTTGTAGAAGATGGAGATGTTTaGGCCGTGAAAATGTTGGCCGTGGTTGGCTACAAT | + |
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Preference number: 6 (lower is better) Translates to: KTKLVLVEDGDV*AVKMLAVVGYN Trigger: ATTGTAGCCAACCACGGCCAACATTTTCACGGCCAAAACATCTCCATCTTCTACAAGAACCAGTTTGGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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| CDS CCA 72 bp | AGTAAGGATAAAGACCAAACTGGTTCTTGTAGAAGATaGAGATGTTTTGGCCGTGAAAATGTTGGCCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: SKDKDQTGSCRR*RCFGRENVGRG Trigger: ACCACGGCCAACATTTTCACGGCCAAAACATCTCCATCTTCTACAAGAACCAGTTTGGTCTTTATCCTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040059.9 ENSMUST00000148440.8 ENSMUST00000149487.2 |
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